Wall clock time and date at job start Sun Mar 29 2020 23:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50700 * 109.47106 * 240.00482 * 2 1 3 5 5 H 1.07999 * 120.00552 * 239.99578 * 4 2 1 6 6 C 1.37879 * 119.99967 * 60.00074 * 4 2 1 7 7 N 1.31518 * 119.99752 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00084 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47147 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46855 * 119.99905 * 8 6 4 11 11 H 1.48498 * 109.47151 * 239.99620 * 8 6 4 12 12 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 13 13 C 1.46499 * 120.00062 * 60.00143 * 12 2 1 14 14 C 1.34779 * 119.99726 * 239.99897 * 12 2 1 15 15 O 1.21615 * 120.00029 * 0.02562 * 14 12 2 16 16 C 1.47099 * 119.99719 * 179.97438 * 14 12 2 17 17 C 1.32997 * 120.00041 * 179.97438 * 16 14 12 18 18 C 1.50701 * 119.99967 * 179.97438 * 17 16 14 19 19 C 1.54259 * 110.03542 * 237.91037 * 18 17 16 20 20 C 1.54966 * 104.16424 * 217.14115 * 19 18 17 21 21 C 1.54894 * 102.77556 * 37.88720 * 20 19 18 22 22 C 1.53884 * 110.02746 * 120.69505 * 18 17 16 23 23 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 24 24 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 25 25 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 26 26 H 0.97008 * 119.99487 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 28 28 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 29 29 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 30 30 H 1.08003 * 120.00196 * 0.02562 * 16 14 12 31 31 H 1.07994 * 120.00024 * 0.02562 * 17 16 14 32 32 H 1.08997 * 110.01816 * 359.30654 * 18 17 16 33 33 H 1.08997 * 110.48786 * 335.78751 * 19 18 17 34 34 H 1.08998 * 110.48727 * 98.43108 * 19 18 17 35 35 H 1.09007 * 110.71660 * 279.57819 * 20 19 18 36 36 H 1.08999 * 110.76923 * 156.22086 * 20 19 18 37 37 H 1.08999 * 110.48472 * 203.41119 * 21 20 19 38 38 H 1.08993 * 110.59647 * 80.82055 * 21 20 19 39 39 H 1.08995 * 110.03055 * 238.56965 * 22 18 17 40 40 H 1.09000 * 110.03291 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3224 -1.1191 -4.0081 9 1 3.1473 -2.2859 -3.6041 10 1 1.1676 -1.5861 -4.8167 11 1 3.1471 -0.1853 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4278 14 6 2.7932 -0.0358 2.0833 15 8 3.0866 1.1287 1.8911 16 6 3.2832 -0.7292 3.2845 17 6 4.0482 -0.0831 4.1598 18 6 4.5497 -0.7933 5.3907 19 6 4.0867 -0.0453 6.6579 20 6 5.2845 -0.1734 7.6327 21 6 6.5077 -0.0347 6.6925 22 6 6.0883 -0.7870 5.4127 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7080 1.1612 -3.4843 27 1 2.4158 -2.7378 0.9713 28 1 0.6905 -2.3003 0.9844 29 1 1.6239 -2.2855 2.5000 30 1 3.0223 -1.7632 3.4554 31 1 4.3095 0.9508 3.9887 32 1 4.1802 -1.8186 5.4064 33 1 3.8896 1.0026 6.4317 34 1 3.1996 -0.5192 7.0780 35 1 5.2815 -1.1477 8.1214 36 1 5.2708 0.6297 8.3696 37 1 7.3863 -0.5008 7.1384 38 1 6.7042 1.0143 6.4713 39 1 6.4655 -1.8093 5.4400 40 1 6.4723 -0.2707 4.5329 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493724129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:49 Heat of formation + Delta-G solvation = -55.652488 kcal Electronic energy + Delta-G solvation = -18365.169312 eV Core-core repulsion = 15564.734551 eV Total energy + Delta-G solvation = -2800.434761 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.76483 -39.19516 -37.18480 -34.89109 -34.15271 -31.45633 -29.52899 -28.94658 -27.62319 -27.29898 -24.43588 -21.97465 -21.48493 -20.47668 -19.66853 -18.56492 -17.97792 -17.27889 -16.60421 -16.13563 -16.02676 -15.79230 -14.79586 -14.60084 -14.30778 -14.19662 -14.00917 -13.50081 -13.26466 -12.99697 -12.75360 -12.73113 -12.65805 -12.48615 -12.20498 -12.13097 -12.11660 -11.93151 -11.87108 -11.48502 -11.37696 -11.18981 -10.70100 -10.50816 -10.29117 -9.30927 -8.16195 -6.33402 0.47767 1.39664 1.41144 1.53070 2.30483 2.47134 2.51832 3.11264 3.58999 3.74627 3.81449 4.02602 4.16227 4.40265 4.52244 4.59259 4.61757 4.67528 4.71218 4.73913 4.78481 4.86244 4.87176 5.01195 5.03108 5.04853 5.11916 5.24223 5.32377 5.37279 5.40886 5.47295 5.51947 5.58454 5.65899 5.70479 6.03615 6.14402 6.74726 6.84379 7.30532 7.47773 8.88468 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.038998 B = 0.004138 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.816182 B = 6764.188962 C = 6966.192626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.258 3.742 3 H 0.006 0.994 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.968 3.032 9 H -0.265 1.265 10 H -0.272 1.272 11 H -0.285 1.285 12 N -0.597 5.597 13 C 0.083 3.917 14 C 0.518 3.482 15 O -0.617 6.617 16 C -0.217 4.217 17 C -0.052 4.052 18 C -0.065 4.065 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.126 4.126 22 C -0.120 4.120 23 H 0.019 0.981 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.265 0.735 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.160 0.840 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.294 -8.425 18.713 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.156 3.844 3 H 0.024 0.976 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.793 3.207 9 H -0.189 1.189 10 H -0.197 1.197 11 H -0.211 1.211 12 N -0.326 5.326 13 C -0.059 4.059 14 C 0.310 3.690 15 O -0.503 6.503 16 C -0.237 4.237 17 C -0.072 4.072 18 C -0.083 4.083 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.164 4.164 22 C -0.157 4.157 23 H 0.038 0.962 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.177 0.823 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.316 -7.764 18.437 20.979 hybrid contribution 0.063 0.258 -1.465 1.489 sum 6.379 -7.506 16.973 19.624 Atomic orbital electron populations 1.21874 0.96989 1.00243 0.99943 1.18563 0.91791 0.92165 0.81897 0.97630 1.21604 1.31916 1.13028 0.91179 0.92225 1.25787 0.95055 0.95666 1.02139 1.70042 1.37336 1.23952 1.24418 0.85356 0.78264 0.78434 0.78646 1.18907 1.19744 1.21075 1.48163 1.48682 1.13480 1.22290 1.21854 1.01447 0.80207 1.02398 1.19489 0.78525 0.86208 0.84826 1.90678 1.61047 1.19750 1.78785 1.22797 1.04340 1.02098 0.94498 1.23888 0.90880 0.98864 0.93610 1.21113 0.96268 0.99779 0.91185 1.22457 0.99187 1.00101 0.93916 1.22515 0.93384 1.02672 0.97075 1.22399 0.98689 1.00198 0.95068 1.22216 0.93383 1.01734 0.98392 0.96210 0.91292 0.93123 0.92592 0.92690 0.91043 0.88467 0.82302 0.88362 0.88324 0.92470 0.90241 0.90088 0.90844 0.90288 0.92331 0.89953 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.63 8.95 71.98 0.64 -5.98 16 2 C 0.26 14.15 2.64 44.24 0.12 14.27 16 3 H 0.01 0.37 6.90 -2.39 -0.02 0.36 16 4 C -0.54 -30.44 8.37 25.60 0.21 -30.23 16 5 H 0.06 3.28 7.65 -2.91 -0.02 3.26 16 6 C 0.01 0.73 5.30 84.65 0.45 1.17 16 7 N -0.92 -54.32 11.32 21.45 0.24 -54.07 16 8 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 9 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 N -0.60 -26.97 2.75 -831.07 -2.29 -29.26 16 13 C 0.08 2.73 9.39 127.77 1.20 3.93 16 14 C 0.52 23.29 7.63 86.57 0.66 23.95 16 15 O -0.62 -33.99 15.55 -4.08 -0.06 -34.05 16 16 C -0.22 -6.78 8.83 23.43 0.21 -6.58 16 17 C -0.05 -1.45 7.98 24.52 0.20 -1.26 16 18 C -0.07 -1.22 3.24 -10.81 -0.04 -1.26 16 19 C -0.12 -1.97 6.36 31.69 0.20 -1.76 16 20 C -0.12 -1.54 6.91 31.91 0.22 -1.32 16 21 C -0.13 -1.83 6.83 31.67 0.22 -1.62 16 22 C -0.12 -2.07 6.45 31.32 0.20 -1.87 16 23 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 25 H 0.05 2.28 6.66 -2.39 -0.02 2.26 16 26 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 2.35 6.43 -2.39 -0.02 2.34 16 29 H 0.10 2.33 6.09 -2.38 -0.01 2.32 16 30 H 0.16 3.68 6.05 -2.91 -0.02 3.66 16 31 H 0.10 3.26 7.49 -2.91 -0.02 3.24 16 32 H 0.10 1.52 7.84 -2.39 -0.02 1.50 16 33 H 0.06 1.10 7.85 -2.39 -0.02 1.09 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 1.09 7.67 -2.39 -0.02 1.07 16 Total: -1.00 -72.30 319.49 5.41 -66.88 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 1.00 Total: 13.03 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 4.49 Total: -8.55 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -2.04 Total: -83.34 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.06 Total: -34.05 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -72.30 5.41 -66.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493724129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.232 kcal (2) G-P(sol) polarization free energy of solvation -72.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds