Wall clock time and date at job start Sun Mar 29 2020 22:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47385 * 2 1 4 4 N 1.46497 * 109.47274 * 120.00660 * 2 1 3 5 5 C 1.46501 * 119.99950 * 304.08943 * 4 2 1 6 6 C 1.50703 * 109.47156 * 270.00477 * 5 4 2 7 7 H 1.08003 * 120.00201 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99793 * 179.97438 * 6 5 4 9 9 N 1.31523 * 119.99980 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00500 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47198 * 89.99920 * 10 8 6 12 12 H 1.48498 * 109.47462 * 210.00326 * 10 8 6 13 13 H 1.48509 * 109.46802 * 330.00226 * 10 8 6 14 14 C 1.34772 * 120.00308 * 124.09161 * 4 2 1 15 15 O 1.21283 * 120.00175 * 185.47256 * 14 4 2 16 16 C 1.50699 * 120.00076 * 5.47517 * 14 4 2 17 17 C 1.52998 * 109.47611 * 175.72209 * 16 14 4 18 18 H 1.08994 * 110.34395 * 304.16830 * 17 16 14 19 19 C 1.51106 * 110.38543 * 66.45143 * 17 16 14 20 20 C 1.30527 * 111.10442 * 135.36277 * 19 17 16 21 21 C 1.51099 * 111.10152 * 0.02562 * 20 19 17 22 22 C 1.54634 * 104.82790 * 343.50336 * 21 20 19 23 23 H 1.09006 * 109.46672 * 295.76337 * 1 2 3 24 24 H 1.08996 * 109.47277 * 55.76343 * 1 2 3 25 25 H 1.09000 * 109.47347 * 175.76556 * 1 2 3 26 26 H 1.09003 * 109.46544 * 240.00727 * 2 1 3 27 27 H 1.08998 * 109.47465 * 184.50446 * 3 2 1 28 28 H 1.09004 * 109.47172 * 304.51228 * 3 2 1 29 29 H 1.09001 * 109.46833 * 64.50514 * 3 2 1 30 30 H 1.09003 * 109.47227 * 29.99876 * 5 4 2 31 31 H 1.08996 * 109.47397 * 149.99796 * 5 4 2 32 32 H 0.96993 * 119.99764 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.47126 * 55.72168 * 16 14 4 34 34 H 1.09006 * 109.46994 * 295.72739 * 16 14 4 35 35 H 1.08007 * 124.44451 * 315.34538 * 19 17 16 36 36 H 1.07997 * 124.44761 * 180.02562 * 20 19 17 37 37 H 1.09000 * 110.38425 * 102.37541 * 21 20 19 38 38 H 1.09001 * 110.38650 * 224.63377 * 21 20 19 39 39 H 1.09001 * 111.03468 * 142.72169 * 22 21 20 40 40 H 1.09001 * 111.03622 * 266.65727 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.5921 -0.2447 2.5248 6 6 2.5553 0.7941 3.0390 7 1 3.4006 1.0920 2.4364 8 6 2.3572 1.3641 4.2786 9 7 3.1975 2.2711 4.7272 10 14 0.8947 0.8495 5.3206 11 1 1.2805 -0.2954 6.1841 12 1 0.4675 1.9892 6.1713 13 1 -0.2266 0.4455 4.4346 14 6 2.8598 -1.7364 1.0740 15 8 3.1858 -2.3702 2.0554 16 6 3.3957 -2.1181 -0.2817 17 6 4.4027 -3.2599 -0.1292 18 1 5.1939 -2.9771 0.5650 19 6 3.7079 -4.5143 0.3473 20 6 4.1089 -5.5583 -0.3258 21 6 5.1385 -5.1742 -1.3629 22 6 5.0035 -3.6404 -1.5055 23 1 -0.3633 0.4467 0.9256 24 1 -0.3633 0.5781 -0.8496 25 1 -0.3634 -1.0248 -0.0759 26 1 1.8932 -0.5138 -0.8901 27 1 3.1270 1.4435 -0.0807 28 1 1.6122 1.9791 -0.8468 29 1 1.7441 1.9324 0.9276 30 1 0.5931 0.1865 2.4602 31 1 1.5772 -1.0954 3.2062 32 1 3.0583 2.6719 5.5994 33 1 3.8885 -1.2571 -0.7332 34 1 2.5732 -2.4418 -0.9196 35 1 2.9758 -4.5433 1.1408 36 1 3.7518 -6.5644 -0.1628 37 1 6.1392 -5.4372 -1.0201 38 1 4.9222 -5.6643 -2.3122 39 1 5.9777 -3.1739 -1.6516 40 1 4.3219 -3.3812 -2.3156 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522962948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:45 Heat of formation + Delta-G solvation = -27.395141 kcal Electronic energy + Delta-G solvation = -19137.093243 eV Core-core repulsion = 16337.883813 eV Total energy + Delta-G solvation = -2799.209430 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.66805 -38.11328 -35.93705 -32.78217 -31.34423 -30.95533 -28.83438 -28.06134 -26.77193 -25.10588 -22.23458 -21.26199 -20.36367 -18.71814 -17.78447 -16.88684 -16.63764 -15.74514 -15.47634 -14.76268 -14.54476 -13.92742 -13.53974 -13.32205 -12.95744 -12.53228 -12.23949 -11.95940 -11.81849 -11.75342 -11.69568 -11.65131 -11.31143 -11.17743 -11.09291 -10.88899 -10.76105 -10.56040 -10.47609 -10.28767 -10.05835 -9.43307 -8.87413 -8.73218 -8.55516 -7.63779 -6.06273 -4.03432 2.47755 3.30086 3.36128 3.38549 3.42759 3.86838 4.41680 4.70346 4.73509 4.97659 5.15045 5.22103 5.27996 5.39504 5.50882 5.55489 5.59272 5.63831 5.68362 5.77398 5.87710 5.94406 5.99954 6.05987 6.13249 6.25399 6.31609 6.33430 6.41890 6.53110 6.75519 6.83041 7.01135 7.03983 7.09227 7.44194 7.65558 8.35091 8.51435 8.97164 9.06705 9.54990 11.06922 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.006146 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.402135 B = 4554.611151 C = 4995.259234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 C -0.161 4.161 4 N -0.591 5.591 5 C 0.213 3.787 6 C -0.521 4.521 7 H 0.076 0.924 8 C 0.071 3.929 9 N -0.899 5.899 10 Si 0.873 3.127 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.509 3.491 15 O -0.542 6.542 16 C -0.131 4.131 17 C -0.055 4.055 18 H 0.090 0.910 19 C -0.126 4.126 20 C -0.197 4.197 21 C -0.096 4.096 22 C -0.122 4.122 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.030 0.970 31 H 0.035 0.965 32 H 0.263 0.737 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.893 -8.982 -14.508 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 C -0.219 4.219 4 N -0.323 5.323 5 C 0.092 3.908 6 C -0.560 4.560 7 H 0.094 0.906 8 C -0.131 4.131 9 N -0.537 5.537 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.191 1.191 14 C 0.296 3.704 15 O -0.419 6.419 16 C -0.171 4.171 17 C -0.074 4.074 18 H 0.108 0.892 19 C -0.144 4.144 20 C -0.215 4.215 21 C -0.133 4.133 22 C -0.159 4.159 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.145 0.855 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.696 -9.176 -13.823 16.678 hybrid contribution -0.728 -0.037 0.748 1.044 sum -2.423 -9.214 -13.076 16.178 Atomic orbital electron populations 1.22170 0.95680 1.01591 1.02670 1.21002 0.93980 0.94216 0.87821 1.22197 1.01102 0.95585 1.03056 1.48019 1.46063 1.30395 1.07813 1.19621 0.95664 0.95730 0.79752 1.21358 1.11287 1.20624 1.02717 0.90570 1.24853 0.96208 0.94748 0.97260 1.69898 1.36684 1.27799 1.19367 0.86895 0.83519 0.78476 0.81062 1.20019 1.21181 1.19138 1.20379 0.79092 0.80306 0.90632 1.90645 1.58633 1.52510 1.40140 1.21723 0.99617 0.99373 0.96426 1.20882 0.97008 0.93247 0.96236 0.89227 1.23411 0.98592 0.94133 0.98263 1.23181 1.00062 0.98623 0.99648 1.21291 0.98398 0.95618 0.97980 1.22604 1.00953 0.95493 0.96900 0.91437 0.92022 0.92955 0.90478 0.92823 0.93241 0.89612 0.95177 0.94713 0.92667 0.89337 0.89624 0.85452 0.86384 0.91202 0.91774 0.90987 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.19 37.16 0.34 -1.96 16 2 C 0.13 2.13 3.13 -67.93 -0.21 1.92 16 3 C -0.16 -2.67 8.73 37.16 0.32 -2.35 16 4 N -0.59 -12.02 2.39 -167.47 -0.40 -12.42 16 5 C 0.21 5.17 3.80 -5.19 -0.02 5.15 16 6 C -0.52 -14.66 8.27 -34.44 -0.28 -14.95 16 7 H 0.08 2.34 7.84 -52.48 -0.41 1.93 16 8 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 9 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 10 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 11 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 14 C 0.51 10.25 7.47 -10.99 -0.08 10.16 16 15 O -0.54 -13.02 14.08 5.55 0.08 -12.95 16 16 C -0.13 -1.93 3.46 -27.88 -0.10 -2.03 16 17 C -0.06 -0.79 2.55 -90.56 -0.23 -1.03 16 18 H 0.09 1.48 8.06 -51.93 -0.42 1.06 16 19 C -0.13 -1.87 9.18 -35.70 -0.33 -2.20 16 20 C -0.20 -2.46 10.78 -35.70 -0.38 -2.84 16 21 C -0.10 -1.02 6.80 -26.83 -0.18 -1.20 16 22 C -0.12 -1.34 6.73 -24.86 -0.17 -1.51 16 23 H 0.07 1.08 6.35 -51.93 -0.33 0.75 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 1.01 5.84 -51.93 -0.30 0.70 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.72 6.61 -51.93 -0.34 1.38 16 30 H 0.03 0.70 5.20 -51.93 -0.27 0.43 16 31 H 0.03 0.92 6.78 -51.93 -0.35 0.56 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.09 1.18 7.89 -51.93 -0.41 0.77 16 34 H 0.09 1.08 7.69 -51.93 -0.40 0.68 16 35 H 0.13 2.14 7.16 -52.48 -0.38 1.76 16 36 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.69 7.92 -51.93 -0.41 0.28 16 LS Contribution 314.91 15.07 4.75 4.75 Total: -1.00 -32.28 314.91 -7.47 -39.75 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.57 Total: 1.54 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -1.42 Total: -10.86 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.37 Total: -39.21 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.95 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.28 -7.47 -39.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522962948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.354 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds