Wall clock time and date at job start Sun Mar 29 2020 23:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 C 1.34779 * 119.99848 * 120.00098 * 12 2 1 15 15 O 1.21282 * 120.00232 * 0.02562 * 14 12 2 16 16 C 1.50702 * 120.00153 * 180.02562 * 14 12 2 17 17 H 1.09010 * 115.54798 * 325.72043 * 16 14 12 18 18 C 1.53003 * 117.49993 * 180.02562 * 16 14 12 19 19 H 1.09004 * 117.49462 * 145.01981 * 18 16 14 20 20 C 1.52988 * 117.49967 * 359.97438 * 18 16 14 21 21 C 1.53008 * 117.49963 * 128.74455 * 20 18 16 22 22 C 1.53004 * 117.49930 * 60.08857 * 20 18 16 23 23 C 1.52999 * 117.50471 * 111.38924 * 16 14 12 24 24 H 1.09002 * 117.50112 * 215.00757 * 23 16 14 25 25 C 1.52998 * 117.49429 * 359.97438 * 23 16 14 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 31 31 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 32 32 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 33 33 H 1.08997 * 115.55684 * 274.42104 * 20 18 16 34 34 H 1.08994 * 117.49342 * 0.02562 * 21 20 18 35 35 H 1.08995 * 117.49504 * 145.02099 * 21 20 18 36 36 H 1.08997 * 117.50169 * 214.98313 * 22 20 18 37 37 H 1.09005 * 117.49613 * 359.97438 * 22 20 18 38 38 H 1.08999 * 109.47407 * 8.61422 * 25 23 16 39 39 H 1.09004 * 109.47139 * 128.61051 * 25 23 16 40 40 H 1.09002 * 109.47521 * 248.60955 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0866 1.1253 -1.8912 16 6 3.2951 -0.7460 -3.3140 17 1 3.5207 -1.8048 -3.1866 18 6 4.1709 0.0518 -4.2823 19 1 4.9729 -0.4823 -4.7921 20 6 4.4696 1.5096 -3.9273 21 6 5.9334 1.9548 -3.9426 22 6 5.1998 1.7807 -2.6104 23 6 2.7321 -0.3014 -4.6654 24 1 2.5873 -1.0676 -5.4270 25 6 1.7021 0.8300 -4.6638 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7082 1.1609 3.4844 30 1 0.7375 -2.1444 -1.9993 31 1 2.4628 -2.5819 -1.9863 32 1 1.5295 -2.5969 -0.4708 33 1 3.7199 2.2341 -4.2453 34 1 6.6834 1.2091 -4.2059 35 1 6.1465 2.9722 -4.2704 36 1 4.9308 2.6836 -2.0623 37 1 5.4670 0.9203 -1.9967 38 1 1.6363 1.2601 -3.6644 39 1 2.0077 1.6006 -5.3715 40 1 0.7284 0.4354 -4.9543 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528419993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:50 Heat of formation + Delta-G solvation = 19.733514 kcal Electronic energy + Delta-G solvation = -19536.687298 eV Core-core repulsion = 16739.521519 eV Total energy + Delta-G solvation = -2797.165778 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.98661 -37.35905 -35.10416 -34.95723 -32.74027 -29.54478 -28.31831 -26.01514 -25.21540 -24.37842 -22.50991 -21.88442 -20.16427 -18.92087 -17.70471 -16.66385 -16.38828 -15.44850 -15.22274 -14.64387 -14.39103 -14.01283 -13.41495 -12.87595 -12.69080 -12.49423 -12.39698 -11.93561 -11.68381 -11.56849 -11.41543 -11.09986 -11.03509 -10.85739 -10.79419 -10.64406 -10.46178 -10.22171 -10.15365 -10.10308 -9.47200 -9.33053 -9.12900 -8.47128 -8.26999 -7.45680 -6.05387 -4.13098 3.23726 3.27657 3.34316 3.36373 3.94993 4.06835 4.35412 4.42336 4.89383 4.98816 5.11487 5.25424 5.34099 5.39756 5.52069 5.55522 5.65076 5.80540 5.86245 5.97836 5.99493 6.03011 6.11588 6.16476 6.28968 6.44531 6.50864 6.56145 6.66753 6.76685 6.79129 6.88167 7.11271 7.51082 7.58736 7.75723 8.06106 8.24127 8.63514 8.87330 9.20734 9.53938 10.99693 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.026607 B = 0.006524 C = 0.005973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.083328 B = 4290.872550 C = 4686.373242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.260 3.740 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.592 5.592 13 C 0.086 3.914 14 C 0.532 3.468 15 O -0.533 6.533 16 C -0.183 4.183 17 H 0.115 0.885 18 C -0.091 4.091 19 H 0.105 0.895 20 C -0.105 4.105 21 C -0.209 4.209 22 C -0.110 4.110 23 C -0.122 4.122 24 H 0.106 0.894 25 C -0.131 4.131 26 H 0.010 0.990 27 H 0.092 0.908 28 H 0.028 0.972 29 H 0.263 0.737 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.429 -3.298 -12.976 13.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.160 3.840 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.323 5.323 13 C -0.058 4.058 14 C 0.319 3.681 15 O -0.412 6.412 16 C -0.205 4.205 17 H 0.133 0.867 18 C -0.110 4.110 19 H 0.123 0.877 20 C -0.123 4.123 21 C -0.247 4.247 22 C -0.147 4.147 23 C -0.141 4.141 24 H 0.124 0.876 25 C -0.188 4.188 26 H 0.029 0.971 27 H 0.110 0.890 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.466 -2.569 -12.684 13.397 hybrid contribution 0.232 -0.855 0.917 1.275 sum 3.698 -3.424 -11.767 12.801 Atomic orbital electron populations 1.22072 0.98393 0.99283 1.00629 1.18877 0.90697 0.94481 0.79969 0.91926 1.21340 1.31634 1.12941 0.90403 0.92368 1.24886 0.94966 0.95002 0.98915 1.69880 1.36387 1.22694 1.23670 0.86522 0.78653 0.79872 0.82486 1.20637 1.21142 1.19971 1.48185 1.49000 1.11538 1.23560 1.21565 0.98658 0.83636 1.01929 1.19326 0.78999 0.86745 0.82986 1.90670 1.57215 1.16682 1.76602 1.22575 1.06592 1.00029 0.91259 0.86728 1.21810 0.93310 0.95048 1.00820 0.87697 1.21370 0.93577 0.94031 1.03341 1.23267 0.95019 1.01339 1.05033 1.22509 0.99963 1.02816 0.89415 1.22295 0.95297 1.00768 0.95753 0.87638 1.21440 0.96874 0.96887 1.03561 0.97123 0.88983 0.95295 0.92744 0.94138 0.92955 0.90461 0.88080 0.89869 0.89774 0.89117 0.89767 0.90807 0.92217 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.97 37.16 0.33 -3.18 16 2 C 0.26 6.63 2.64 -69.08 -0.18 6.44 16 3 H 0.06 1.84 6.90 -51.93 -0.36 1.48 16 4 C -0.52 -14.21 7.99 -34.44 -0.28 -14.48 16 5 H 0.06 1.56 7.33 -52.49 -0.38 1.17 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.21 11.32 55.43 0.63 -24.58 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 12 N -0.59 -12.63 2.75 -175.26 -0.48 -13.11 16 13 C 0.09 1.49 9.26 59.85 0.55 2.05 16 14 C 0.53 10.75 5.93 -10.98 -0.07 10.68 16 15 O -0.53 -12.09 9.92 5.56 0.06 -12.03 16 16 C -0.18 -2.84 5.28 -91.77 -0.48 -3.33 16 17 H 0.11 1.58 6.44 -51.92 -0.33 1.24 16 18 C -0.09 -1.28 5.87 -90.61 -0.53 -1.81 16 19 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 20 C -0.11 -1.62 4.08 -90.62 -0.37 -1.99 16 21 C -0.21 -2.88 10.26 -26.69 -0.27 -3.15 16 22 C -0.11 -1.88 7.09 -26.69 -0.19 -2.07 16 23 C -0.12 -1.62 6.41 -90.61 -0.58 -2.20 16 24 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 25 C -0.13 -1.83 8.66 37.16 0.32 -1.51 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 28 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.75 5.99 -51.93 -0.31 0.44 16 32 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 33 H 0.10 1.62 6.71 -51.93 -0.35 1.27 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.67 8.06 -51.93 -0.42 1.25 16 37 H 0.08 1.56 7.97 -51.93 -0.41 1.15 16 38 H 0.07 1.30 5.70 -51.93 -0.30 1.00 16 39 H 0.06 0.75 7.68 -51.93 -0.40 0.36 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 311.41 15.07 4.69 4.69 Total: -1.00 -29.18 311.41 -8.40 -37.58 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.44 Total: 4.21 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -1.84 Total: -12.87 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.14 Total: -37.69 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.06 Total: -12.03 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.18 -8.40 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528419993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.313 kcal (2) G-P(sol) polarization free energy of solvation -29.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds