Wall clock time and date at job start Sun Mar 29 2020 23:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 C 1.34779 * 119.99848 * 120.00098 * 12 2 1 15 15 O 1.21282 * 120.00232 * 0.02562 * 14 12 2 16 16 C 1.50702 * 120.00153 * 180.02562 * 14 12 2 17 17 H 1.09010 * 115.54798 * 325.72043 * 16 14 12 18 18 C 1.53003 * 117.49993 * 180.02562 * 16 14 12 19 19 H 1.09004 * 117.49462 * 145.01981 * 18 16 14 20 20 C 1.52988 * 117.49967 * 359.97438 * 18 16 14 21 21 C 1.53008 * 117.49963 * 128.74455 * 20 18 16 22 22 C 1.53004 * 117.49930 * 60.08857 * 20 18 16 23 23 C 1.52999 * 117.50471 * 111.38924 * 16 14 12 24 24 H 1.09002 * 117.50112 * 215.00757 * 23 16 14 25 25 C 1.52998 * 117.49429 * 359.97438 * 23 16 14 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 31 31 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 32 32 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 33 33 H 1.08997 * 115.55684 * 274.42104 * 20 18 16 34 34 H 1.08994 * 117.49342 * 0.02562 * 21 20 18 35 35 H 1.08995 * 117.49504 * 145.02099 * 21 20 18 36 36 H 1.08997 * 117.50169 * 214.98313 * 22 20 18 37 37 H 1.09005 * 117.49613 * 359.97438 * 22 20 18 38 38 H 1.08999 * 109.47407 * 8.61422 * 25 23 16 39 39 H 1.09004 * 109.47139 * 128.61051 * 25 23 16 40 40 H 1.09002 * 109.47521 * 248.60955 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0866 1.1253 -1.8912 16 6 3.2951 -0.7460 -3.3140 17 1 3.5207 -1.8048 -3.1866 18 6 4.1709 0.0518 -4.2823 19 1 4.9729 -0.4823 -4.7921 20 6 4.4696 1.5096 -3.9273 21 6 5.9334 1.9548 -3.9426 22 6 5.1998 1.7807 -2.6104 23 6 2.7321 -0.3014 -4.6654 24 1 2.5873 -1.0676 -5.4270 25 6 1.7021 0.8300 -4.6638 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7082 1.1609 3.4844 30 1 0.7375 -2.1444 -1.9993 31 1 2.4628 -2.5819 -1.9863 32 1 1.5295 -2.5969 -0.4708 33 1 3.7199 2.2341 -4.2453 34 1 6.6834 1.2091 -4.2059 35 1 6.1465 2.9722 -4.2704 36 1 4.9308 2.6836 -2.0623 37 1 5.4670 0.9203 -1.9967 38 1 1.6363 1.2601 -3.6644 39 1 2.0077 1.6006 -5.3715 40 1 0.7284 0.4354 -4.9543 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528419993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:49 Heat of formation + Delta-G solvation = 3.970296 kcal Electronic energy + Delta-G solvation = -19537.370842 eV Core-core repulsion = 16739.521519 eV Total energy + Delta-G solvation = -2797.849323 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.36502 -38.81196 -36.75057 -36.25960 -34.68321 -31.44156 -29.48533 -27.49365 -27.31144 -25.77117 -23.86430 -23.13419 -21.87346 -20.05331 -19.22659 -18.44719 -18.01527 -17.00136 -16.73507 -16.14119 -16.01378 -15.42216 -14.97893 -14.40750 -14.14127 -13.91749 -13.76436 -13.52286 -13.17256 -13.04164 -12.93899 -12.82040 -12.72513 -12.63678 -12.29477 -12.18675 -12.13052 -11.88331 -11.65911 -11.35162 -11.16307 -10.71388 -10.55502 -10.49867 -9.77896 -9.15886 -8.14321 -6.30911 1.39359 1.40627 1.50501 1.84224 2.34733 2.54314 2.81027 3.12933 3.17818 3.69111 3.81172 3.94950 4.08837 4.27675 4.33965 4.42039 4.53146 4.60347 4.61223 4.75781 4.77251 4.86689 4.88390 4.90474 4.92139 5.04261 5.09998 5.12618 5.17173 5.25953 5.37678 5.44780 5.47941 5.49463 5.65599 5.71489 6.09317 6.19057 6.78326 6.98972 7.36030 7.67283 8.89452 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.026607 B = 0.006524 C = 0.005973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.083328 B = 4290.872550 C = 4686.373242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.267 3.733 3 H 0.008 0.992 4 C -0.537 4.537 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.283 1.283 10 H -0.280 1.280 11 H -0.262 1.262 12 N -0.605 5.605 13 C 0.085 3.915 14 C 0.521 3.479 15 O -0.570 6.570 16 C -0.196 4.196 17 H 0.141 0.859 18 C -0.089 4.089 19 H 0.139 0.861 20 C -0.108 4.108 21 C -0.174 4.174 22 C -0.140 4.140 23 C -0.101 4.101 24 H 0.148 0.852 25 C -0.132 4.132 26 H 0.017 0.983 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.264 0.736 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.029 0.971 39 H 0.071 0.929 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.305 -5.706 -15.217 16.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.788 3.212 9 H -0.209 1.209 10 H -0.205 1.205 11 H -0.186 1.186 12 N -0.336 5.336 13 C -0.058 4.058 14 C 0.310 3.690 15 O -0.450 6.450 16 C -0.217 4.217 17 H 0.158 0.842 18 C -0.107 4.107 19 H 0.156 0.844 20 C -0.126 4.126 21 C -0.211 4.211 22 C -0.177 4.177 23 C -0.119 4.119 24 H 0.165 0.835 25 C -0.189 4.189 26 H 0.036 0.964 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.341 -5.005 -14.952 16.354 hybrid contribution -0.046 -0.004 1.593 1.594 sum 4.295 -5.009 -13.358 14.899 Atomic orbital electron populations 1.21846 0.97604 0.99763 0.99606 1.18406 0.91210 0.92145 0.81803 0.97370 1.21609 1.31627 1.12946 0.91345 0.92348 1.25731 0.95119 0.95677 1.01994 1.70026 1.37396 1.24006 1.24318 0.85493 0.77793 0.79243 0.78715 1.20872 1.20507 1.18583 1.48184 1.49574 1.13169 1.22636 1.21748 1.00868 0.81210 1.01936 1.20231 0.78083 0.86619 0.84052 1.90672 1.58153 1.18616 1.77568 1.22525 1.08553 1.00858 0.89721 0.84158 1.22005 0.94879 0.93756 1.00085 0.84379 1.21420 0.94466 0.95358 1.01404 1.23320 0.94343 1.02761 1.00643 1.22246 1.03843 1.00958 0.90659 1.22501 0.94127 1.00698 0.94602 0.83464 1.21430 0.98411 0.97771 1.01264 0.96421 0.91643 0.93827 0.92720 0.92294 0.89501 0.91930 0.89407 0.87516 0.88410 0.92157 0.91916 0.95158 0.91003 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.45 8.97 71.98 0.65 -5.81 16 2 C 0.27 14.17 2.64 44.25 0.12 14.29 16 3 H 0.01 0.53 6.90 -2.39 -0.02 0.51 16 4 C -0.54 -29.81 7.99 25.60 0.20 -29.60 16 5 H 0.06 3.16 7.33 -2.91 -0.02 3.14 16 6 C 0.01 0.79 5.30 84.66 0.45 1.24 16 7 N -0.92 -54.01 11.32 21.45 0.24 -53.76 16 8 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 9 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 12 N -0.60 -26.05 2.75 -826.79 -2.28 -28.33 16 13 C 0.09 2.79 9.26 127.77 1.18 3.97 16 14 C 0.52 21.27 5.93 87.66 0.52 21.79 16 15 O -0.57 -27.38 9.92 -3.04 -0.03 -27.41 16 16 C -0.20 -5.57 5.28 -11.54 -0.06 -5.63 16 17 H 0.14 3.25 6.44 -2.38 -0.02 3.23 16 18 C -0.09 -2.20 5.87 -10.79 -0.06 -2.27 16 19 H 0.14 2.57 8.14 -2.38 -0.02 2.55 16 20 C -0.11 -3.24 4.08 -10.79 -0.04 -3.29 16 21 C -0.17 -4.45 10.26 30.62 0.31 -4.13 16 22 C -0.14 -4.96 7.09 30.62 0.22 -4.74 16 23 C -0.10 -2.29 6.41 -10.79 -0.07 -2.35 16 24 H 0.15 2.23 8.14 -2.39 -0.02 2.22 16 25 C -0.13 -3.47 8.66 71.98 0.62 -2.85 16 26 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 3.61 6.07 -2.39 -0.01 3.60 16 28 H 0.04 1.98 7.67 -2.38 -0.02 1.96 16 29 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 30 H 0.06 1.70 8.14 -2.38 -0.02 1.69 16 31 H 0.09 2.22 5.99 -2.39 -0.01 2.20 16 32 H 0.06 2.23 7.02 -2.39 -0.02 2.21 16 33 H 0.09 2.83 6.71 -2.39 -0.02 2.82 16 34 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.06 2.44 8.06 -2.39 -0.02 2.42 16 37 H 0.06 2.45 7.97 -2.38 -0.02 2.43 16 38 H 0.03 1.07 5.70 -2.39 -0.01 1.05 16 39 H 0.07 1.69 7.68 -2.38 -0.02 1.67 16 40 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -68.02 311.41 5.01 -63.01 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 1.01 Total: 20.01 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 4.04 Total: -19.38 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -2.03 Total: -82.09 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.03 Total: -27.41 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -68.02 5.01 -63.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528419993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.978 kcal (2) G-P(sol) polarization free energy of solvation -68.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds