Wall clock time and date at job start Sun Mar 29 2020 23:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09012 * 109.46938 * 2 1 4 4 C 1.50706 * 109.47325 * 119.99540 * 2 1 3 5 5 H 1.08002 * 119.99356 * 114.36872 * 4 2 1 6 6 C 1.37877 * 120.00116 * 294.37316 * 4 2 1 7 7 N 1.31510 * 119.99957 * 157.15012 * 6 4 2 8 8 Si 1.86799 * 120.00009 * 337.14725 * 6 4 2 9 9 H 1.48496 * 109.47128 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47245 * 60.00265 * 8 6 4 11 11 H 1.48497 * 109.47243 * 300.00183 * 8 6 4 12 12 N 1.46494 * 109.47032 * 240.00273 * 2 1 3 13 13 C 1.46500 * 119.99749 * 299.99299 * 12 2 1 14 14 C 1.34780 * 120.00250 * 120.00233 * 12 2 1 15 15 O 1.21276 * 119.99651 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00065 * 179.97438 * 14 12 2 17 17 H 1.09004 * 115.55135 * 325.66930 * 16 14 12 18 18 C 1.53000 * 117.49911 * 111.37133 * 16 14 12 19 19 H 1.08998 * 117.50062 * 214.97812 * 18 16 14 20 20 C 1.52998 * 117.49861 * 0.02562 * 18 16 14 21 21 C 1.53000 * 117.49949 * 179.97438 * 16 14 12 22 22 H 1.08995 * 117.49635 * 0.02562 * 21 16 14 23 23 C 1.52997 * 117.49639 * 145.02233 * 21 16 14 24 24 C 1.52999 * 117.49805 * 248.74286 * 23 21 16 25 25 C 1.53001 * 117.49646 * 180.08754 * 23 21 16 26 26 H 1.09004 * 109.47399 * 53.28961 * 1 2 3 27 27 H 1.08993 * 109.47101 * 173.29276 * 1 2 3 28 28 H 1.09004 * 109.47182 * 293.29554 * 1 2 3 29 29 H 0.97003 * 119.99465 * 354.91849 * 7 6 4 30 30 H 1.08997 * 109.47065 * 90.00843 * 13 12 2 31 31 H 1.09004 * 109.47338 * 210.00001 * 13 12 2 32 32 H 1.08994 * 109.47566 * 330.00517 * 13 12 2 33 33 H 1.08999 * 109.47287 * 8.60757 * 20 18 16 34 34 H 1.09001 * 109.47125 * 128.60386 * 20 18 16 35 35 H 1.09001 * 109.47021 * 248.60302 * 20 18 16 36 36 H 1.08995 * 115.55465 * 34.41933 * 23 21 16 37 37 H 1.09001 * 117.50198 * 0.02562 * 24 23 21 38 38 H 1.08998 * 117.49832 * 145.02246 * 24 23 21 39 39 H 1.08999 * 117.50288 * 214.98132 * 25 23 21 40 40 H 1.09004 * 117.50134 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5762 -1.6384 1.1340 6 6 1.7976 -0.1754 2.4795 7 7 1.8130 -0.9519 3.5408 8 14 1.4577 1.6521 2.6640 9 1 1.2401 1.9728 4.0975 10 1 0.2447 2.0110 1.8863 11 1 2.6188 2.4254 2.1550 12 7 2.0182 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4279 14 6 2.7931 -0.0355 -2.0833 15 8 3.0858 1.1257 -1.8916 16 6 3.2959 -0.7461 -3.3135 17 1 3.5229 -1.8045 -3.1853 18 6 2.7328 -0.3026 -4.6652 19 1 2.5891 -1.0692 -5.4266 20 6 1.7028 0.8288 -4.6645 21 6 4.1707 0.0520 -4.2824 22 1 4.3828 1.0908 -4.0298 23 6 5.2972 -0.6967 -4.9974 24 6 6.7353 -0.3438 -4.6126 25 6 6.1733 0.1019 -5.9648 26 1 -0.3634 0.6143 -0.8239 27 1 -0.3633 -1.0206 -0.1200 28 1 -0.3634 0.4064 0.9439 29 1 1.9161 -1.9110 3.4385 30 1 0.7376 -2.1444 -1.9993 31 1 2.4629 -2.5818 -1.9863 32 1 1.5295 -2.5968 -0.4708 33 1 1.6370 1.2597 -3.6655 34 1 2.0085 1.5988 -5.3729 35 1 0.7292 0.4339 -4.9548 36 1 5.0845 -1.7351 -5.2514 37 1 6.8790 0.4213 -3.8497 38 1 7.4688 -1.1501 -4.6137 39 1 6.5372 -0.4112 -6.8549 40 1 5.9468 1.1605 -6.0921 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528419995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:51 Heat of formation + Delta-G solvation = -11.763714 kcal Electronic energy + Delta-G solvation = -19017.112304 eV Core-core repulsion = 16218.580704 eV Total energy + Delta-G solvation = -2798.531601 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.34693 -39.07747 -37.28329 -36.28985 -34.84264 -32.13577 -29.62605 -27.70943 -26.89986 -25.92609 -23.24841 -23.17315 -21.70875 -21.07899 -19.63114 -19.45537 -18.06979 -17.00868 -16.80565 -16.34667 -15.65001 -15.53674 -14.84155 -14.82190 -14.39084 -14.03532 -13.99682 -13.74117 -13.46292 -13.33086 -13.19923 -12.92156 -12.81050 -12.46299 -12.39321 -12.14835 -12.06189 -11.96765 -11.73142 -11.56234 -11.25675 -10.84239 -10.67820 -10.48809 -10.26959 -9.50728 -8.74298 -6.40092 1.39941 1.47214 1.58991 1.67164 2.24088 2.40117 2.60981 2.94761 3.19107 3.44619 3.69789 3.76525 4.01297 4.14343 4.26494 4.29422 4.33091 4.39921 4.46974 4.52553 4.59859 4.69018 4.73561 4.77823 4.81379 4.86331 4.92742 5.03595 5.05072 5.10353 5.12594 5.28464 5.32820 5.36756 5.44633 5.70608 5.80922 6.02036 6.53990 6.72657 7.25635 7.39861 8.56191 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.028363 B = 0.005653 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.964159 B = 4952.026397 C = 5118.999265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.234 3.766 3 H 0.027 0.973 4 C -0.614 4.614 5 H 0.033 0.967 6 C 0.000 4.000 7 N -0.922 5.922 8 Si 1.065 2.935 9 H -0.278 1.278 10 H -0.246 1.246 11 H -0.285 1.285 12 N -0.595 5.595 13 C 0.085 3.915 14 C 0.529 3.471 15 O -0.600 6.600 16 C -0.192 4.192 17 H 0.141 0.859 18 C -0.092 4.092 19 H 0.148 0.852 20 C -0.134 4.134 21 C -0.091 4.091 22 H 0.086 0.914 23 C -0.126 4.126 24 C -0.191 4.191 25 C -0.160 4.160 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.259 0.741 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.125 0.875 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 -2.007 -20.801 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.131 3.869 3 H 0.045 0.955 4 C -0.652 4.652 5 H 0.051 0.949 6 C -0.201 4.201 7 N -0.556 5.556 8 Si 0.888 3.112 9 H -0.203 1.203 10 H -0.170 1.170 11 H -0.211 1.211 12 N -0.324 5.324 13 C -0.057 4.057 14 C 0.319 3.681 15 O -0.483 6.483 16 C -0.213 4.213 17 H 0.158 0.842 18 C -0.111 4.111 19 H 0.165 0.835 20 C -0.191 4.191 21 C -0.110 4.110 22 H 0.104 0.896 23 C -0.144 4.144 24 C -0.228 4.228 25 C -0.197 4.197 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.143 0.857 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.725 -0.265 -19.541 19.619 hybrid contribution 0.543 -1.397 -0.117 1.503 sum 2.268 -1.662 -19.658 19.858 Atomic orbital electron populations 1.22241 0.96428 1.01300 1.00345 1.18903 0.91968 0.93180 0.82853 0.95512 1.22249 1.40298 1.10009 0.92616 0.94853 1.26714 0.92991 1.08571 0.91839 1.70958 1.46229 1.05933 1.32519 0.83766 0.78602 0.72093 0.76742 1.20341 1.17028 1.21141 1.47954 1.49227 1.13286 1.21967 1.21789 1.01447 0.80635 1.01841 1.20268 0.77526 0.86121 0.84221 1.90584 1.60173 1.19469 1.78106 1.22493 1.08502 1.01036 0.89275 0.84159 1.22533 0.93695 1.00831 0.94002 0.83483 1.21483 0.98673 0.97547 1.01402 1.21831 0.91787 0.98219 0.99148 0.89622 1.21748 0.89756 0.99829 1.03081 1.23011 0.96523 1.04062 0.99183 1.23011 1.02346 1.00648 0.93664 0.93596 0.92293 0.92960 0.93200 0.90979 0.89512 0.92528 0.95115 0.90864 0.90270 0.85664 0.90648 0.87320 0.86477 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.26 9.02 71.98 0.65 -5.62 16 2 C 0.23 11.67 2.23 44.25 0.10 11.77 16 3 H 0.03 1.49 5.48 -2.38 -0.01 1.47 16 4 C -0.61 -35.05 8.30 25.60 0.21 -34.84 16 5 H 0.03 2.05 7.38 -2.91 -0.02 2.03 16 6 C 0.00 0.02 5.20 84.66 0.44 0.46 16 7 N -0.92 -56.91 13.70 21.45 0.29 -56.62 16 8 Si 1.07 52.36 26.44 68.60 1.81 54.17 16 9 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 10 H -0.25 -10.84 6.12 99.48 0.61 -10.23 16 11 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 12 N -0.59 -25.24 2.75 -826.81 -2.28 -27.51 16 13 C 0.09 2.80 9.13 127.77 1.17 3.96 16 14 C 0.53 21.78 6.09 87.66 0.53 22.32 16 15 O -0.60 -29.80 14.64 -3.02 -0.04 -29.84 16 16 C -0.19 -5.58 5.01 -11.54 -0.06 -5.64 16 17 H 0.14 3.42 6.44 -2.39 -0.02 3.40 16 18 C -0.09 -2.07 6.13 -10.81 -0.07 -2.14 16 19 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 20 C -0.13 -3.31 10.02 71.98 0.72 -2.59 16 21 C -0.09 -2.37 5.08 -10.81 -0.05 -2.42 16 22 H 0.09 2.77 7.67 -2.39 -0.02 2.75 16 23 C -0.13 -2.47 5.84 -10.79 -0.06 -2.54 16 24 C -0.19 -3.84 10.25 30.62 0.31 -3.53 16 25 C -0.16 -2.66 10.25 30.62 0.31 -2.35 16 26 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.06 2.36 7.45 -2.39 -0.02 2.34 16 28 H 0.05 2.33 5.44 -2.38 -0.01 2.32 16 29 H 0.26 15.98 8.73 -92.71 -0.81 15.18 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.09 2.28 5.99 -2.38 -0.01 2.27 16 32 H 0.06 2.12 6.92 -2.39 -0.02 2.10 16 33 H 0.03 1.01 5.70 -2.39 -0.01 1.00 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -71.69 319.03 4.87 -66.82 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.88 Total: 16.13 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 4.21 Total: -23.14 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -1.98 Total: -84.13 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.04 Total: -29.84 kcal Atomic # 14 Polarization: 52.36 SS G_CDS: 1.81 Total: 54.17 kcal Total: -71.69 4.87 -66.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528419995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.053 kcal (2) G-P(sol) polarization free energy of solvation -71.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds