Wall clock time and date at job start Sun Mar 29 2020 22:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46943 * 2 1 4 4 H 1.09005 * 109.47081 * 305.00347 * 3 2 1 5 5 C 1.50701 * 109.47089 * 185.00267 * 3 2 1 6 6 H 1.08006 * 119.99483 * 239.99892 * 5 3 2 7 7 C 1.37870 * 120.00132 * 59.99851 * 5 3 2 8 8 N 1.31517 * 120.00066 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00060 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47093 * 59.99891 * 9 7 5 11 11 H 1.48503 * 109.47257 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46825 * 300.00142 * 9 7 5 13 13 N 1.46502 * 109.46984 * 65.00137 * 3 2 1 14 14 C 1.34783 * 119.99899 * 274.72099 * 13 3 2 15 15 O 1.21279 * 119.99929 * 0.28036 * 14 13 3 16 16 C 1.50693 * 119.99759 * 180.27697 * 14 13 3 17 17 H 1.09006 * 115.55424 * 298.47316 * 16 14 13 18 18 C 1.53002 * 117.49757 * 152.76904 * 16 14 13 19 19 H 1.09004 * 117.50031 * 359.97438 * 18 16 14 20 20 C 1.53005 * 117.50029 * 145.01908 * 18 16 14 21 21 C 1.52997 * 117.50136 * 84.14577 * 16 14 13 22 22 H 1.08995 * 117.50442 * 215.00229 * 21 16 14 23 23 C 1.53005 * 117.49913 * 359.97438 * 21 16 14 24 24 C 1.52997 * 117.50047 * 253.90858 * 23 21 16 25 25 C 1.52991 * 117.50347 * 185.24457 * 23 21 16 26 26 H 1.09003 * 109.47054 * 59.99962 * 1 2 3 27 27 H 1.09003 * 109.46471 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46625 * 299.99652 * 1 2 3 29 29 H 1.08994 * 109.47059 * 240.00134 * 2 1 3 30 30 H 1.08997 * 109.47370 * 119.99711 * 2 1 3 31 31 H 0.97001 * 120.00196 * 180.02562 * 8 7 5 32 32 H 0.96991 * 120.00260 * 95.00452 * 13 3 2 33 33 H 1.09003 * 109.46697 * 8.60852 * 20 18 16 34 34 H 1.08997 * 109.46934 * 128.60751 * 20 18 16 35 35 H 1.08998 * 109.47051 * 248.60881 * 20 18 16 36 36 H 1.09000 * 115.54685 * 39.57307 * 23 21 16 37 37 H 1.09005 * 117.49630 * 359.97438 * 24 23 21 38 38 H 1.08999 * 117.50169 * 145.01518 * 24 23 21 39 39 H 1.08998 * 117.49895 * 214.97928 * 25 23 21 40 40 H 1.09001 * 117.49916 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3376 -2.1733 9 14 6.0050 0.8802 -1.3812 10 1 6.5967 0.1455 -0.2344 11 1 6.3979 0.2158 -2.6499 12 1 6.5004 2.2801 -1.3808 13 7 1.6525 2.0975 1.2518 14 6 0.4372 2.6693 1.3651 15 8 -0.3374 2.6371 0.4324 16 6 0.0409 3.3484 2.6506 17 1 0.0108 2.7069 3.5314 18 6 -0.9857 4.4796 2.5647 19 1 -1.3741 4.7329 1.5782 20 6 -1.9765 4.6240 3.7216 21 6 0.4834 4.7995 2.8486 22 1 0.7443 5.1128 3.8594 23 6 1.2948 5.4501 1.7263 24 6 2.7918 5.6567 1.9654 25 6 1.8420 6.8571 1.9743 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8292 -0.0609 -2.9500 32 1 2.2719 2.1232 1.9977 33 1 -1.6877 3.9554 4.5327 34 1 -1.9697 5.6535 4.0795 35 1 -2.9777 4.3657 3.3768 36 1 0.9761 5.2054 0.7131 37 1 3.1985 5.3297 2.9224 38 1 3.4579 5.5484 1.1094 39 1 1.8836 7.5380 1.1242 40 1 1.6235 7.3197 2.9368 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529035051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:37 Heat of formation + Delta-G solvation = -7.309757 kcal Electronic energy + Delta-G solvation = -19144.102413 eV Core-core repulsion = 16345.763950 eV Total energy + Delta-G solvation = -2798.338462 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.68495 -37.58309 -35.55942 -34.70566 -32.27392 -30.85812 -28.68039 -26.96655 -24.33969 -22.92031 -22.17081 -21.56087 -20.18269 -19.59870 -18.96802 -16.99196 -15.80326 -15.50925 -15.29286 -14.57061 -14.27141 -13.99128 -13.42064 -13.29314 -12.97824 -12.64323 -12.44895 -12.06439 -11.51237 -11.43200 -11.39688 -11.22029 -11.14640 -10.97543 -10.89728 -10.78333 -10.45298 -10.29799 -10.13659 -9.64795 -9.58480 -9.28351 -9.01258 -8.81135 -8.45630 -7.72661 -6.09261 -4.18238 3.26429 3.31873 3.32283 3.33449 3.71824 4.05506 4.31480 4.39505 4.66488 4.92429 5.03795 5.21861 5.24408 5.31785 5.37239 5.41814 5.49432 5.76198 5.77676 5.78397 5.82464 6.07509 6.08547 6.18875 6.31712 6.41638 6.43053 6.50027 6.51869 6.70603 7.08513 7.24354 7.41993 7.54286 7.66436 7.79372 7.95307 8.22441 8.77022 8.83662 9.25205 9.49827 10.96078 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.021264 B = 0.006982 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.469349 B = 4009.093123 C = 5029.623867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.047 0.953 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.701 5.701 14 C 0.534 3.466 15 O -0.551 6.551 16 C -0.177 4.177 17 H 0.119 0.881 18 C -0.121 4.121 19 H 0.113 0.887 20 C -0.120 4.120 21 C -0.098 4.098 22 H 0.106 0.894 23 C -0.123 4.123 24 C -0.168 4.168 25 C -0.180 4.180 26 H 0.049 0.951 27 H 0.021 0.979 28 H 0.038 0.962 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.388 0.612 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.280 8.186 10.961 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.348 5.348 14 C 0.318 3.682 15 O -0.431 6.431 16 C -0.198 4.198 17 H 0.137 0.863 18 C -0.139 4.139 19 H 0.131 0.869 20 C -0.177 4.177 21 C -0.117 4.117 22 H 0.124 0.876 23 C -0.141 4.141 24 C -0.205 4.205 25 C -0.217 4.217 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.116 0.884 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.793 8.036 10.073 13.748 hybrid contribution 1.373 -0.184 0.271 1.412 sum -3.419 7.852 10.343 13.429 Atomic orbital electron populations 1.21835 0.98393 0.97935 1.01249 1.21940 0.92586 0.99980 1.02173 1.18737 0.94052 0.89046 0.81148 0.93518 1.21198 0.90787 1.38799 1.06139 0.92180 1.24876 0.98435 0.94907 0.95442 1.69889 1.35135 1.37710 1.09364 0.86548 0.85095 0.78270 0.77413 1.20207 1.21182 1.20230 1.46392 1.14558 1.55516 1.18315 1.19343 0.82602 0.78731 0.87484 1.90654 1.51656 1.60479 1.40275 1.22602 1.06111 0.91848 0.99239 0.86296 1.22361 0.90120 1.00433 1.01018 0.86932 1.21353 0.98433 1.01434 0.96446 1.21858 0.96252 0.95228 0.98319 0.87589 1.21706 0.95421 0.98256 0.98729 1.22905 0.92599 1.01627 1.03371 1.22918 1.05107 0.91036 1.02650 0.93215 0.95954 0.94248 0.88379 0.95120 0.92577 0.78048 0.92641 0.92186 0.92016 0.87514 0.88923 0.88384 0.89058 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.52 37.16 0.32 -2.81 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.30 16 3 C 0.27 6.84 2.24 -69.08 -0.15 6.69 16 4 H 0.05 1.37 7.57 -51.93 -0.39 0.98 16 5 C -0.53 -13.95 8.73 -34.44 -0.30 -14.25 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.84 11.29 55.43 0.63 -24.21 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.70 -14.56 5.02 -54.93 -0.28 -14.83 16 14 C 0.53 10.62 4.84 -10.99 -0.05 10.57 16 15 O -0.55 -13.00 13.75 5.56 0.08 -12.92 16 16 C -0.18 -2.67 5.82 -91.78 -0.53 -3.20 16 17 H 0.12 1.57 8.05 -51.93 -0.42 1.15 16 18 C -0.12 -1.64 5.64 -90.62 -0.51 -2.15 16 19 H 0.11 1.75 7.93 -51.93 -0.41 1.34 16 20 C -0.12 -1.24 10.19 37.16 0.38 -0.86 16 21 C -0.10 -1.29 5.57 -90.62 -0.50 -1.79 16 22 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 23 C -0.12 -1.78 5.07 -90.62 -0.46 -2.24 16 24 C -0.17 -2.28 10.25 -26.70 -0.27 -2.55 16 25 C -0.18 -2.16 10.25 -26.70 -0.27 -2.44 16 26 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.88 5.66 -51.93 -0.29 0.58 16 29 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.39 7.20 8.54 -40.82 -0.35 6.86 16 33 H 0.05 0.53 7.90 -51.93 -0.41 0.12 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.11 1.88 7.71 -51.93 -0.40 1.48 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 325.28 15.07 4.90 4.90 Total: -1.00 -29.16 325.28 -9.04 -38.20 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.74 Total: 9.90 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -2.61 Total: -16.65 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.35 Total: -39.05 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.16 -9.04 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529035051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.895 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds