Wall clock time and date at job start Sun Mar 29 2020 22:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46943 * 2 1 4 4 H 1.09005 * 109.47081 * 305.00347 * 3 2 1 5 5 C 1.50701 * 109.47089 * 185.00267 * 3 2 1 6 6 H 1.08006 * 119.99483 * 239.99892 * 5 3 2 7 7 C 1.37870 * 120.00132 * 59.99851 * 5 3 2 8 8 N 1.31517 * 120.00066 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00060 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47093 * 59.99891 * 9 7 5 11 11 H 1.48503 * 109.47257 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46825 * 300.00142 * 9 7 5 13 13 N 1.46502 * 109.46984 * 65.00137 * 3 2 1 14 14 C 1.34783 * 119.99899 * 274.72099 * 13 3 2 15 15 O 1.21279 * 119.99929 * 0.28036 * 14 13 3 16 16 C 1.50693 * 119.99759 * 180.27697 * 14 13 3 17 17 H 1.09006 * 115.55424 * 298.47316 * 16 14 13 18 18 C 1.53002 * 117.49757 * 152.76904 * 16 14 13 19 19 H 1.09004 * 117.50031 * 359.97438 * 18 16 14 20 20 C 1.53005 * 117.50029 * 145.01908 * 18 16 14 21 21 C 1.52997 * 117.50136 * 84.14577 * 16 14 13 22 22 H 1.08995 * 117.50442 * 215.00229 * 21 16 14 23 23 C 1.53005 * 117.49913 * 359.97438 * 21 16 14 24 24 C 1.52997 * 117.50047 * 253.90858 * 23 21 16 25 25 C 1.52991 * 117.50347 * 185.24457 * 23 21 16 26 26 H 1.09003 * 109.47054 * 59.99962 * 1 2 3 27 27 H 1.09003 * 109.46471 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46625 * 299.99652 * 1 2 3 29 29 H 1.08994 * 109.47059 * 240.00134 * 2 1 3 30 30 H 1.08997 * 109.47370 * 119.99711 * 2 1 3 31 31 H 0.97001 * 120.00196 * 180.02562 * 8 7 5 32 32 H 0.96991 * 120.00260 * 95.00452 * 13 3 2 33 33 H 1.09003 * 109.46697 * 8.60852 * 20 18 16 34 34 H 1.08997 * 109.46934 * 128.60751 * 20 18 16 35 35 H 1.08998 * 109.47051 * 248.60881 * 20 18 16 36 36 H 1.09000 * 115.54685 * 39.57307 * 23 21 16 37 37 H 1.09005 * 117.49630 * 359.97438 * 24 23 21 38 38 H 1.08999 * 117.50169 * 145.01518 * 24 23 21 39 39 H 1.08998 * 117.49895 * 214.97928 * 25 23 21 40 40 H 1.09001 * 117.49916 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3376 -2.1733 9 14 6.0050 0.8802 -1.3812 10 1 6.5967 0.1455 -0.2344 11 1 6.3979 0.2158 -2.6499 12 1 6.5004 2.2801 -1.3808 13 7 1.6525 2.0975 1.2518 14 6 0.4372 2.6693 1.3651 15 8 -0.3374 2.6371 0.4324 16 6 0.0409 3.3484 2.6506 17 1 0.0108 2.7069 3.5314 18 6 -0.9857 4.4796 2.5647 19 1 -1.3741 4.7329 1.5782 20 6 -1.9765 4.6240 3.7216 21 6 0.4834 4.7995 2.8486 22 1 0.7443 5.1128 3.8594 23 6 1.2948 5.4501 1.7263 24 6 2.7918 5.6567 1.9654 25 6 1.8420 6.8571 1.9743 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8292 -0.0609 -2.9500 32 1 2.2719 2.1232 1.9977 33 1 -1.6877 3.9554 4.5327 34 1 -1.9697 5.6535 4.0795 35 1 -2.9777 4.3657 3.3768 36 1 0.9761 5.2054 0.7131 37 1 3.1985 5.3297 2.9224 38 1 3.4579 5.5484 1.1094 39 1 1.8836 7.5380 1.1242 40 1 1.6235 7.3197 2.9368 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529035051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:36 Heat of formation + Delta-G solvation = -24.003920 kcal Electronic energy + Delta-G solvation = -19144.826326 eV Core-core repulsion = 16345.763950 eV Total energy + Delta-G solvation = -2799.062376 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.12526 -38.97161 -37.00657 -36.26007 -34.23874 -32.75251 -29.75128 -28.82257 -25.81078 -24.69845 -23.18721 -22.95698 -21.44228 -21.27064 -20.56964 -18.68503 -17.42830 -17.19181 -16.76145 -16.28506 -15.74014 -15.49291 -14.72820 -14.55938 -14.54511 -13.93277 -13.80216 -13.55178 -13.39028 -13.16538 -12.91515 -12.67069 -12.59181 -12.39122 -12.24142 -12.16142 -12.08008 -11.96476 -11.59902 -11.48771 -11.06338 -10.72311 -10.66408 -10.51318 -10.19736 -9.56989 -8.15483 -6.32584 1.43596 1.45432 1.53161 1.86134 2.35059 2.52346 2.70501 3.13677 3.22424 3.53494 3.82985 3.89621 4.11157 4.28987 4.30498 4.35883 4.39694 4.47355 4.52840 4.55937 4.76104 4.81307 4.89535 5.00040 5.03960 5.05954 5.13430 5.24440 5.24942 5.29759 5.31534 5.43664 5.49132 5.56417 5.66704 5.80281 5.96111 6.18001 6.75953 7.07501 7.34957 7.67038 8.89843 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.021264 B = 0.006982 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.469349 B = 4009.093123 C = 5029.623867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.281 3.719 4 H -0.009 1.009 5 C -0.543 4.543 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.697 5.697 14 C 0.531 3.469 15 O -0.596 6.596 16 C -0.189 4.189 17 H 0.149 0.851 18 C -0.119 4.119 19 H 0.080 0.920 20 C -0.113 4.113 21 C -0.074 4.074 22 H 0.145 0.855 23 C -0.149 4.149 24 C -0.173 4.173 25 C -0.153 4.153 26 H 0.022 0.978 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.516 9.176 14.199 17.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.178 3.822 4 H 0.009 0.991 5 C -0.582 4.582 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.345 5.345 14 C 0.318 3.682 15 O -0.478 6.478 16 C -0.210 4.210 17 H 0.167 0.833 18 C -0.138 4.138 19 H 0.099 0.901 20 C -0.170 4.170 21 C -0.093 4.093 22 H 0.163 0.837 23 C -0.167 4.167 24 C -0.210 4.210 25 C -0.190 4.190 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.235 0.765 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.027 9.040 13.350 16.617 hybrid contribution 1.095 -0.446 -0.819 1.438 sum -2.932 8.593 12.530 15.474 Atomic orbital electron populations 1.21667 0.97107 0.99066 1.00123 1.21794 0.93650 0.99371 1.01241 1.18293 0.93549 0.88940 0.81427 0.99062 1.21528 0.91398 1.38663 1.06565 0.91135 1.25764 1.03224 0.94448 0.95038 1.70051 1.37109 1.38516 1.09896 0.85457 0.79248 0.78430 0.77567 1.18831 1.21257 1.19695 1.46158 1.15474 1.55600 1.17229 1.20194 0.81462 0.77723 0.88817 1.90632 1.52810 1.61848 1.42538 1.22579 1.08293 0.93034 0.97097 0.83340 1.22421 0.91244 0.99092 1.01063 0.90123 1.21356 0.97169 1.03169 0.95260 1.21974 0.95330 0.92679 0.99272 0.83739 1.21617 0.96588 1.01302 0.97215 1.22933 0.91582 1.03025 1.03458 1.23021 1.02107 0.89695 1.04140 0.95863 0.93525 0.93803 0.91085 0.94014 0.92678 0.76477 0.90995 0.90134 0.92149 0.92195 0.86870 0.90623 0.89003 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.52 71.98 0.61 -5.11 16 2 C -0.12 -6.16 5.45 30.60 0.17 -5.99 16 3 C 0.28 14.75 2.24 44.25 0.10 14.85 16 4 H -0.01 -0.54 7.57 -2.38 -0.02 -0.55 16 5 C -0.54 -29.06 8.73 25.60 0.22 -28.84 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.92 -53.35 11.29 21.44 0.24 -53.11 16 9 Si 0.97 42.46 29.54 68.60 2.03 44.48 16 10 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 11 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 N -0.70 -29.47 5.02 -446.08 -2.24 -31.70 16 14 C 0.53 21.58 4.84 87.65 0.42 22.00 16 15 O -0.60 -29.68 13.75 -3.03 -0.04 -29.72 16 16 C -0.19 -5.41 5.82 -11.54 -0.07 -5.47 16 17 H 0.15 3.39 8.05 -2.38 -0.02 3.37 16 18 C -0.12 -3.06 5.64 -10.79 -0.06 -3.12 16 19 H 0.08 2.59 7.93 -2.39 -0.02 2.58 16 20 C -0.11 -1.96 10.19 71.98 0.73 -1.23 16 21 C -0.07 -1.76 5.57 -10.79 -0.06 -1.82 16 22 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 23 C -0.15 -4.23 5.07 -10.80 -0.05 -4.28 16 24 C -0.17 -4.45 10.25 30.62 0.31 -4.14 16 25 C -0.15 -3.31 10.25 30.62 0.31 -3.00 16 26 H 0.02 1.16 7.85 -2.39 -0.02 1.15 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.04 1.98 5.66 -2.39 -0.01 1.97 16 29 H 0.07 4.01 5.95 -2.39 -0.01 4.00 16 30 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 32 H 0.40 14.68 8.54 -92.71 -0.79 13.88 16 33 H 0.07 1.05 7.90 -2.39 -0.02 1.03 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 2.26 7.71 -2.39 -0.02 2.24 16 37 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.09 1.97 8.14 -2.39 -0.02 1.96 16 40 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -67.33 325.28 3.30 -64.03 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.22 Total: 30.91 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 3.09 Total: -24.88 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -2.00 Total: -84.82 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.04 Total: -29.72 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -67.33 3.30 -64.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529035051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.022 kcal (2) G-P(sol) polarization free energy of solvation -67.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds