Wall clock time and date at job start Sun Mar 29 2020 22:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47207 * 2 1 4 4 N 1.46493 * 109.47190 * 120.00098 * 2 1 3 5 5 C 1.46500 * 120.00456 * 299.99955 * 4 2 1 6 6 C 1.50695 * 109.46964 * 270.00490 * 5 4 2 7 7 H 1.08002 * 120.00382 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99935 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00100 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99975 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47164 * 90.00528 * 10 8 6 12 12 H 1.48493 * 109.47374 * 210.00566 * 10 8 6 13 13 H 1.48507 * 109.47102 * 330.00620 * 10 8 6 14 14 C 1.34779 * 119.99921 * 119.99720 * 4 2 1 15 15 O 1.21289 * 119.99866 * 179.97438 * 14 4 2 16 16 C 1.50701 * 120.00184 * 0.02562 * 14 4 2 17 17 H 1.09002 * 115.55088 * 34.41183 * 16 14 4 18 18 C 1.53005 * 117.49691 * 248.74253 * 16 14 4 19 19 C 1.52999 * 59.99973 * 252.48494 * 18 16 14 20 20 H 1.08995 * 117.49529 * 107.48826 * 19 18 16 21 21 C 1.52995 * 117.50039 * 252.50950 * 19 18 16 22 22 C 1.53004 * 117.50068 * 197.37215 * 21 19 18 23 23 C 1.52999 * 117.50020 * 128.71139 * 21 19 18 24 24 H 1.08998 * 109.47182 * 299.99735 * 1 2 3 25 25 H 1.09007 * 109.47429 * 60.00167 * 1 2 3 26 26 H 1.09002 * 109.47380 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46832 * 240.00165 * 2 1 3 28 28 H 1.08997 * 109.47066 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47257 * 300.00340 * 3 2 1 30 30 H 1.08998 * 109.46833 * 60.00052 * 3 2 1 31 31 H 1.09006 * 109.46543 * 29.99759 * 5 4 2 32 32 H 1.08992 * 109.47493 * 149.99806 * 5 4 2 33 33 H 0.96998 * 120.00266 * 179.97438 * 9 8 6 34 34 H 1.09004 * 117.49602 * 359.97438 * 18 16 14 35 35 H 1.09004 * 117.49357 * 144.97176 * 18 16 14 36 36 H 1.09002 * 115.55084 * 343.04329 * 21 19 18 37 37 H 1.09000 * 117.49782 * 359.97438 * 22 21 19 38 38 H 1.09001 * 117.49745 * 145.02093 * 22 21 19 39 39 H 1.09002 * 117.50036 * 214.98008 * 23 21 19 40 40 H 1.09002 * 117.49849 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6644 -0.1902 2.5267 6 6 2.7031 0.8018 2.9829 7 1 3.5431 1.0357 2.3456 8 6 2.5817 1.4099 4.2144 9 7 3.4879 2.2760 4.6123 10 14 1.1293 1.0047 5.3170 11 1 1.4786 -0.1412 6.1946 12 1 0.7983 2.1860 6.1537 13 1 -0.0436 0.6472 4.4793 14 6 2.7931 -1.7864 1.0724 15 8 3.1978 -2.3579 2.0627 16 6 3.1576 -2.3010 -0.2964 17 1 3.2998 -1.5389 -1.0626 18 6 2.5536 -3.6374 -0.7326 19 6 4.0376 -3.5504 -0.3707 20 1 4.3532 -4.0003 0.5706 21 6 5.0499 -3.6345 -1.5148 22 6 6.5011 -3.9561 -1.1519 23 6 6.1179 -2.5418 -1.5948 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.6904 0.2973 2.4843 32 1 1.6238 -1.0227 3.2291 33 1 3.4023 2.7041 5.4785 34 1 1.8929 -4.1445 -0.0294 35 1 2.2981 -3.7542 -1.7858 36 1 4.6659 -4.0326 -2.4540 37 1 6.7346 -4.1074 -0.0980 38 1 7.0718 -4.5655 -1.8526 39 1 6.4367 -2.2214 -2.5867 40 1 6.0990 -1.7628 -0.8326 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530954520.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:56 Heat of formation + Delta-G solvation = 10.232759 kcal Electronic energy + Delta-G solvation = -19093.196025 eV Core-core repulsion = 16295.618263 eV Total energy + Delta-G solvation = -2797.577762 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73606 -37.83746 -36.02737 -34.69469 -32.68240 -30.95595 -28.31953 -26.74170 -24.70464 -23.31193 -22.37734 -21.91117 -21.06432 -19.82555 -17.87047 -16.99720 -16.83958 -15.71209 -15.18835 -14.79110 -14.31635 -14.12566 -13.53789 -13.43197 -12.99526 -12.55281 -12.39956 -12.29506 -11.79644 -11.67912 -11.61907 -11.42777 -11.29949 -10.98853 -10.90147 -10.76753 -10.73501 -10.49332 -10.27048 -10.08082 -9.93810 -9.52562 -9.42530 -8.92616 -8.54828 -7.66121 -6.05044 -4.02140 3.11798 3.30423 3.36397 3.38679 3.65890 3.88310 4.12922 4.42357 4.63244 4.85896 4.90355 5.04774 5.12949 5.23113 5.28721 5.35791 5.46152 5.49468 5.55735 5.63823 5.66166 5.75347 5.91487 5.99324 6.07638 6.13611 6.17052 6.20509 6.28605 6.34050 6.41180 6.56189 6.81399 6.99603 7.02948 7.42932 7.65851 8.33904 8.51884 8.98374 9.05859 9.55876 11.08244 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.022832 B = 0.006350 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.031371 B = 4408.444635 C = 4777.011472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.584 5.584 5 C 0.215 3.785 6 C -0.520 4.520 7 H 0.076 0.924 8 C 0.071 3.929 9 N -0.899 5.899 10 Si 0.873 3.127 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.536 3.464 15 O -0.543 6.543 16 C -0.178 4.178 17 H 0.121 0.879 18 C -0.149 4.149 19 C -0.095 4.095 20 H 0.118 0.882 21 C -0.125 4.125 22 C -0.176 4.176 23 C -0.177 4.177 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.031 0.969 32 H 0.033 0.967 33 H 0.263 0.737 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.416 -8.467 -14.880 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 C -0.215 4.215 4 N -0.314 5.314 5 C 0.094 3.906 6 C -0.559 4.559 7 H 0.094 0.906 8 C -0.131 4.131 9 N -0.537 5.537 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.323 3.677 15 O -0.421 6.421 16 C -0.200 4.200 17 H 0.138 0.862 18 C -0.186 4.186 19 C -0.113 4.113 20 H 0.136 0.864 21 C -0.143 4.143 22 C -0.213 4.213 23 C -0.214 4.214 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.176 -8.616 -14.176 16.732 hybrid contribution -0.668 0.115 0.657 0.944 sum -2.843 -8.501 -13.519 16.221 Atomic orbital electron populations 1.22163 0.95766 1.01729 1.02322 1.21055 0.93868 0.94216 0.87966 1.22146 1.01736 0.95415 1.02226 1.47919 1.49258 1.26403 1.07856 1.19622 0.96320 0.95094 0.79527 1.21344 1.09197 1.22369 1.02949 0.90563 1.24851 0.96051 0.94807 0.97362 1.69892 1.34648 1.28442 1.20758 0.86903 0.83503 0.78204 0.81397 1.20018 1.21150 1.19130 1.19429 0.78597 0.80643 0.89077 1.90655 1.53506 1.58602 1.39356 1.22396 1.07042 0.92616 0.97900 0.86165 1.22984 0.96095 0.97700 1.01830 1.21784 0.90598 0.99723 0.99200 0.86433 1.21744 0.89629 1.04418 0.98499 1.22987 0.97071 0.98844 1.02373 1.23005 1.03031 0.92602 1.02787 0.91720 0.92080 0.92863 0.90167 0.92476 0.93277 0.90121 0.95124 0.94867 0.92670 0.88433 0.88240 0.87696 0.88543 0.88983 0.88967 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.17 37.15 0.34 -1.95 16 2 C 0.13 2.17 3.16 -67.94 -0.21 1.95 16 3 C -0.16 -2.68 8.47 37.16 0.31 -2.36 16 4 N -0.58 -12.16 2.39 -167.48 -0.40 -12.56 16 5 C 0.21 5.29 3.66 -5.20 -0.02 5.27 16 6 C -0.52 -14.82 8.38 -34.44 -0.29 -15.10 16 7 H 0.08 2.38 7.87 -52.49 -0.41 1.97 16 8 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 9 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 10 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 11 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 13 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 14 C 0.54 11.22 7.46 -10.98 -0.08 11.14 16 15 O -0.54 -13.72 15.84 5.55 0.09 -13.63 16 16 C -0.18 -2.75 4.65 -91.77 -0.43 -3.18 16 17 H 0.12 1.66 6.65 -51.93 -0.35 1.32 16 18 C -0.15 -1.86 9.95 -26.73 -0.27 -2.13 16 19 C -0.09 -1.32 5.38 -90.62 -0.49 -1.81 16 20 H 0.12 1.91 7.67 -51.93 -0.40 1.51 16 21 C -0.12 -1.43 5.87 -90.62 -0.53 -1.96 16 22 C -0.18 -1.93 10.26 -26.69 -0.27 -2.20 16 23 C -0.18 -2.05 10.18 -26.69 -0.27 -2.32 16 24 H 0.06 1.02 6.66 -51.93 -0.35 0.67 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.08 1.11 5.43 -51.93 -0.28 0.82 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.61 6.92 -51.93 -0.36 1.25 16 31 H 0.03 0.72 5.49 -51.93 -0.28 0.44 16 32 H 0.03 0.89 6.85 -51.93 -0.36 0.53 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 323.88 15.07 4.88 4.88 Total: -1.00 -32.87 323.88 -8.23 -41.10 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.60 Total: 2.78 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -2.30 Total: -12.67 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.37 Total: -39.54 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.09 Total: -13.63 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.87 -8.23 -41.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530954520.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.330 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds