Wall clock time and date at job start Sun Mar 29 2020 22:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.46497 * 119.99968 * 59.99779 * 4 2 1 6 6 C 1.50705 * 109.47385 * 90.00172 * 5 4 2 7 7 H 1.07998 * 119.99470 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00173 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99952 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99959 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47052 * 60.00263 * 10 8 6 12 12 H 1.48498 * 109.47276 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47475 * 300.00328 * 10 8 6 14 14 C 1.34774 * 119.99744 * 239.99606 * 4 2 1 15 15 O 1.21290 * 119.99924 * 180.02562 * 14 4 2 16 16 C 1.50698 * 120.00338 * 359.97438 * 14 4 2 17 17 H 1.08995 * 115.54851 * 325.58557 * 16 14 4 18 18 C 1.53003 * 117.49544 * 111.25110 * 16 14 4 19 19 C 1.52999 * 117.49951 * 179.91043 * 16 14 4 20 20 H 1.09003 * 117.49788 * 145.02695 * 19 16 14 21 21 C 1.52996 * 117.50026 * 0.02562 * 19 16 14 22 22 C 1.53002 * 117.49887 * 128.61810 * 21 19 16 23 23 C 1.52994 * 60.00126 * 252.51183 * 22 21 19 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47260 * 210.00281 * 5 4 2 32 32 H 1.09000 * 109.47562 * 329.99730 * 5 4 2 33 33 H 0.96996 * 120.00129 * 179.97438 * 9 8 6 34 34 H 1.09004 * 117.49876 * 214.98044 * 18 16 14 35 35 H 1.08995 * 117.50364 * 0.02562 * 18 16 14 36 36 H 1.09002 * 115.55149 * 274.33253 * 21 19 16 37 37 H 1.09008 * 117.49937 * 0.02562 * 22 21 19 38 38 H 1.08998 * 117.50017 * 145.02074 * 22 21 19 39 39 H 1.09002 * 117.50096 * 252.50610 * 23 22 21 40 40 H 1.09008 * 117.49679 * 107.48823 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.6643 -0.1900 -2.5267 6 6 2.7031 0.8020 -2.9831 7 1 3.5426 1.0364 -2.3455 8 6 2.5815 1.4102 -4.2145 9 7 1.5594 1.1243 -4.9910 10 14 3.8686 2.6402 -4.7797 11 1 5.1960 1.9767 -4.8368 12 1 3.5106 3.1466 -6.1290 13 1 3.9231 3.7746 -3.8231 14 6 2.7932 -1.7863 -1.0725 15 8 3.1979 -2.3578 -2.0629 16 6 3.1578 -2.3009 0.2961 17 1 3.3001 -1.5388 1.0623 18 6 2.5538 -3.6372 0.7324 19 6 4.0385 -3.5498 0.3698 20 1 4.7598 -3.6096 1.1848 21 6 4.4820 -4.1805 -0.9517 22 6 5.9752 -4.4585 -1.1357 23 6 5.3095 -3.3156 -1.9046 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6237 -1.0225 -3.2292 32 1 0.6903 0.2974 -2.4844 33 1 1.4736 1.5524 -5.8571 34 1 2.2992 -3.7544 1.7858 35 1 1.8931 -4.1444 0.0294 36 1 3.7798 -4.8869 -1.3945 37 1 6.6416 -4.1924 -0.3151 38 1 6.2558 -5.3481 -1.6996 39 1 5.1520 -3.4532 -2.9744 40 1 5.5378 -2.2972 -1.5900 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530954521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:57 Heat of formation + Delta-G solvation = -0.032695 kcal Electronic energy + Delta-G solvation = -19494.950058 eV Core-core repulsion = 16696.927153 eV Total energy + Delta-G solvation = -2798.022905 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.18838 -38.80875 -37.10471 -35.90972 -34.85918 -32.33537 -29.63741 -27.98924 -26.14577 -24.57670 -23.74558 -23.19139 -22.33606 -21.11082 -19.04311 -18.56980 -18.21760 -16.87697 -16.46848 -16.16269 -15.79878 -15.65742 -14.84360 -14.80027 -14.22958 -14.11042 -13.79920 -13.42887 -13.31317 -13.15852 -12.82786 -12.71948 -12.52015 -12.36188 -12.19383 -12.18502 -12.08143 -11.86325 -11.68002 -11.62836 -11.52311 -10.76414 -10.61259 -10.56844 -9.80242 -9.27633 -8.18172 -6.30170 1.33764 1.37672 1.44510 1.85407 2.33503 2.48760 2.81752 3.10592 3.18855 3.65841 3.85403 3.98320 4.05410 4.10681 4.32343 4.34735 4.36205 4.43590 4.55133 4.61434 4.84061 4.86684 4.87329 4.90732 4.99742 5.05807 5.08716 5.14807 5.20787 5.28891 5.31793 5.36623 5.43894 5.45249 5.58450 5.66953 5.97710 6.14523 6.77060 6.97214 7.34542 7.68415 8.88238 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.018627 B = 0.008063 C = 0.006323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.849520 B = 3471.951822 C = 4427.317467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.127 3.873 3 C -0.152 4.152 4 N -0.599 5.599 5 C 0.269 3.731 6 C -0.521 4.521 7 H 0.051 0.949 8 C 0.005 3.995 9 N -0.931 5.931 10 Si 0.958 3.042 11 H -0.280 1.280 12 H -0.280 1.280 13 H -0.261 1.261 14 C 0.514 3.486 15 O -0.568 6.568 16 C -0.196 4.196 17 H 0.144 0.856 18 C -0.126 4.126 19 C -0.091 4.091 20 H 0.141 0.859 21 C -0.112 4.112 22 C -0.171 4.171 23 C -0.140 4.140 24 H 0.055 0.945 25 H 0.095 0.905 26 H 0.035 0.965 27 H 0.115 0.885 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.041 0.959 31 H -0.011 1.011 32 H 0.020 0.980 33 H 0.264 0.736 34 H 0.142 0.858 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.391 -6.176 16.522 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 C -0.210 4.210 4 N -0.330 5.330 5 C 0.147 3.853 6 C -0.560 4.560 7 H 0.069 0.931 8 C -0.193 4.193 9 N -0.572 5.572 10 Si 0.783 3.217 11 H -0.206 1.206 12 H -0.206 1.206 13 H -0.186 1.186 14 C 0.304 3.696 15 O -0.448 6.448 16 C -0.216 4.216 17 H 0.161 0.839 18 C -0.164 4.164 19 C -0.110 4.110 20 H 0.159 0.841 21 C -0.130 4.130 22 C -0.208 4.208 23 C -0.177 4.177 24 H 0.074 0.926 25 H 0.114 0.886 26 H 0.054 0.946 27 H 0.132 0.868 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.008 0.992 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.160 0.840 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.492 -6.404 15.825 17.252 hybrid contribution 0.284 0.956 -1.421 1.737 sum 2.776 -5.447 14.403 15.647 Atomic orbital electron populations 1.22098 0.94613 1.02006 1.02508 1.21366 0.94947 0.93658 0.87613 1.22086 1.00477 0.96183 1.02230 1.48312 1.49569 1.27336 1.07816 1.18542 0.94856 0.92384 0.79478 1.21620 1.08837 1.23443 1.02069 0.93067 1.25785 0.97766 0.99139 0.96589 1.70046 1.31367 1.44670 1.11079 0.85611 0.79022 0.79298 0.77763 1.20556 1.20565 1.18595 1.20396 0.78068 0.80164 0.91007 1.90695 1.53496 1.59129 1.41445 1.22346 1.09639 0.94071 0.95592 0.83874 1.23104 0.95044 0.94683 1.03538 1.21938 0.94562 0.96943 0.97506 0.84138 1.21466 0.93459 1.01916 0.96201 1.23306 0.94402 0.99817 1.03227 1.22222 1.04129 0.94776 0.96586 0.92636 0.88627 0.94631 0.86772 0.94042 0.89317 0.93986 0.99248 0.96227 0.92711 0.83968 0.90154 0.89871 0.87311 0.88375 0.92371 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 9.17 71.98 0.66 -3.75 16 2 C 0.13 4.02 3.16 44.99 0.14 4.16 16 3 C -0.15 -4.92 8.47 71.98 0.61 -4.31 16 4 N -0.60 -25.69 2.39 -802.14 -1.91 -27.61 16 5 C 0.27 14.70 4.59 85.64 0.39 15.09 16 6 C -0.52 -30.19 7.83 25.60 0.20 -29.99 16 7 H 0.05 2.95 7.63 -2.91 -0.02 2.93 16 8 C 0.01 0.32 5.46 84.65 0.46 0.78 16 9 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 10 Si 0.96 46.02 29.54 68.60 2.03 48.04 16 11 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 14 C 0.51 21.45 7.29 87.66 0.64 22.09 16 15 O -0.57 -28.49 11.11 -3.06 -0.03 -28.52 16 16 C -0.20 -5.52 4.99 -11.54 -0.06 -5.58 16 17 H 0.14 3.23 6.65 -2.39 -0.02 3.22 16 18 C -0.13 -2.78 9.96 30.62 0.30 -2.48 16 19 C -0.09 -2.27 5.87 -10.77 -0.06 -2.33 16 20 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 21 C -0.11 -3.48 4.48 -10.79 -0.05 -3.52 16 22 C -0.17 -4.51 10.25 30.59 0.31 -4.20 16 23 C -0.14 -5.18 7.08 30.59 0.22 -4.96 16 24 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 25 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.03 1.23 6.66 -2.39 -0.02 1.21 16 27 H 0.11 2.77 5.43 -2.39 -0.01 2.75 16 28 H 0.04 1.66 6.92 -2.39 -0.02 1.64 16 29 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 31 H -0.01 -0.68 7.42 -2.39 -0.02 -0.69 16 32 H 0.02 1.11 6.43 -2.39 -0.02 1.09 16 33 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.14 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.11 2.36 8.14 -2.38 -0.02 2.35 16 38 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.06 2.47 8.06 -2.39 -0.02 2.45 16 40 H 0.06 2.56 7.96 -2.38 -0.02 2.54 16 Total: -1.00 -72.93 319.13 5.14 -67.79 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 1.00 Total: 16.52 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 3.77 Total: -19.00 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -1.63 Total: -84.84 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.03 Total: -28.52 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -72.93 5.14 -67.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530954521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.761 kcal (2) G-P(sol) polarization free energy of solvation -72.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds