Wall clock time and date at job start Sun Mar 29 2020 22:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46958 * 2 1 4 4 N 1.46503 * 109.47025 * 119.99992 * 2 1 3 5 5 C 1.46500 * 120.00089 * 295.73944 * 4 2 1 6 6 C 1.50702 * 109.46430 * 90.00328 * 5 4 2 7 7 H 1.08000 * 120.00377 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99474 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00413 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99978 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47231 * 179.97438 * 10 8 6 12 12 H 1.48496 * 109.47333 * 59.99530 * 10 8 6 13 13 H 1.48505 * 109.46895 * 299.99951 * 10 8 6 14 14 C 1.34775 * 119.99587 * 115.74492 * 4 2 1 15 15 O 1.21286 * 119.99759 * 185.24828 * 14 4 2 16 16 C 1.50697 * 120.00476 * 5.25288 * 14 4 2 17 17 H 1.09005 * 115.54719 * 305.19987 * 16 14 4 18 18 C 1.52992 * 117.50283 * 159.52927 * 16 14 4 19 19 C 1.52998 * 117.50193 * 90.86371 * 16 14 4 20 20 H 1.09000 * 117.50228 * 215.00342 * 19 16 14 21 21 C 1.52999 * 117.49888 * 0.02562 * 19 16 14 22 22 C 1.52999 * 117.50035 * 251.07975 * 21 19 16 23 23 C 1.53002 * 117.49903 * 182.41690 * 21 19 16 24 24 H 1.09005 * 109.47154 * 305.19541 * 1 2 3 25 25 H 1.08995 * 109.47227 * 65.19911 * 1 2 3 26 26 H 1.09005 * 109.46994 * 185.20295 * 1 2 3 27 27 H 1.09000 * 109.47016 * 240.00345 * 2 1 3 28 28 H 1.08998 * 109.46599 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47335 * 299.99941 * 3 2 1 30 30 H 1.09000 * 109.46975 * 60.00320 * 3 2 1 31 31 H 1.08998 * 109.46944 * 330.00679 * 5 4 2 32 32 H 1.08993 * 109.47314 * 210.00146 * 5 4 2 33 33 H 0.97004 * 119.99541 * 0.02562 * 9 8 6 34 34 H 1.08997 * 117.49871 * 359.97438 * 18 16 14 35 35 H 1.08996 * 117.50016 * 145.01841 * 18 16 14 36 36 H 1.09005 * 115.54668 * 36.75430 * 21 19 16 37 37 H 1.08992 * 117.50044 * 359.97438 * 22 21 19 38 38 H 1.09001 * 117.49649 * 145.02476 * 22 21 19 39 39 H 1.09003 * 117.49918 * 214.98345 * 23 21 19 40 40 H 1.08998 * 117.49742 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7430 -0.1380 2.5248 6 6 0.4420 -0.6964 3.0411 7 1 -0.1230 -1.3934 2.4400 8 6 -0.0270 -0.3173 4.2811 9 7 0.6612 0.5311 5.0133 10 14 -1.6394 -1.0098 4.9216 11 1 -1.9186 -0.4497 6.2682 12 1 -1.5418 -2.4889 5.0117 13 1 -2.7393 -0.6420 3.9941 14 6 2.7209 -1.8343 1.0743 15 8 3.0432 -2.4564 2.0643 16 6 3.1062 -2.3401 -0.2920 17 1 2.2830 -2.4694 -0.9947 18 6 4.2694 -3.3302 -0.3767 19 6 4.4540 -1.8889 -0.8582 20 1 4.5176 -1.7215 -1.9334 21 6 5.3079 -0.9592 0.0063 22 6 5.4448 0.4966 -0.4441 23 6 6.6297 -0.4626 -0.5830 24 1 -0.3634 0.5923 0.8398 25 1 -0.3633 0.4310 -0.9328 26 1 -0.3633 -1.0235 0.0932 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6719 0.9476 2.4591 32 1 2.5502 -0.4088 3.2053 33 1 1.4986 0.8905 4.6808 34 1 4.7564 -3.6155 0.5558 35 1 4.2118 -4.1107 -1.1353 36 1 5.2763 -1.1536 1.0784 37 1 4.9268 0.7919 -1.3565 38 1 5.5037 1.2600 0.3317 39 1 7.4676 -0.3298 0.1014 40 1 6.8911 -0.7986 -1.5864 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530954522.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:59 Heat of formation + Delta-G solvation = -17.016640 kcal Electronic energy + Delta-G solvation = -19565.798229 eV Core-core repulsion = 16767.038844 eV Total energy + Delta-G solvation = -2798.759384 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.29079 -38.84902 -37.64268 -35.99885 -35.17152 -32.41022 -29.29218 -28.10021 -25.94818 -24.82611 -23.94887 -23.15728 -22.52405 -21.31486 -19.58291 -18.79430 -18.13382 -17.07803 -16.88288 -15.91021 -15.76136 -15.62025 -15.00637 -14.69301 -14.64020 -14.33043 -13.89592 -13.56795 -13.49047 -13.15294 -12.93979 -12.59707 -12.55392 -12.39968 -12.31276 -12.21000 -12.16078 -11.99371 -11.82087 -11.57707 -11.11891 -10.97176 -10.71749 -10.59597 -10.36157 -9.43439 -8.66267 -6.40219 1.45776 1.55356 1.70968 1.74546 2.24834 2.51361 2.56388 3.11281 3.21393 3.44382 3.66746 3.80942 3.95857 3.99969 4.22205 4.26332 4.29510 4.30262 4.37010 4.40148 4.70002 4.77102 4.80178 4.82464 4.88290 4.92488 4.98607 5.00810 5.02898 5.04930 5.17594 5.25986 5.32972 5.36110 5.49533 5.68829 5.86806 6.18753 6.47436 6.77568 7.32596 7.47465 8.67398 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.025761 B = 0.006686 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.666331 B = 4186.729274 C = 4339.807692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.131 3.869 3 C -0.158 4.158 4 N -0.584 5.584 5 C 0.255 3.745 6 C -0.600 4.600 7 H 0.044 0.956 8 C -0.035 4.035 9 N -0.935 5.935 10 Si 1.115 2.885 11 H -0.280 1.280 12 H -0.283 1.283 13 H -0.261 1.261 14 C 0.527 3.473 15 O -0.607 6.607 16 C -0.195 4.195 17 H 0.150 0.850 18 C -0.145 4.145 19 C -0.068 4.068 20 H 0.155 0.845 21 C -0.156 4.156 22 C -0.168 4.168 23 C -0.152 4.152 24 H 0.038 0.962 25 H 0.093 0.907 26 H 0.038 0.962 27 H 0.116 0.884 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.032 0.968 31 H 0.021 0.979 32 H -0.022 1.022 33 H 0.252 0.748 34 H 0.071 0.929 35 H 0.137 0.863 36 H 0.054 0.946 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.251 -0.390 -19.471 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.028 3.972 3 C -0.216 4.216 4 N -0.314 5.314 5 C 0.133 3.867 6 C -0.638 4.638 7 H 0.062 0.938 8 C -0.233 4.233 9 N -0.572 5.572 10 Si 0.936 3.064 11 H -0.205 1.205 12 H -0.209 1.209 13 H -0.185 1.185 14 C 0.317 3.683 15 O -0.490 6.490 16 C -0.216 4.216 17 H 0.168 0.832 18 C -0.182 4.182 19 C -0.087 4.087 20 H 0.172 0.828 21 C -0.175 4.175 22 C -0.205 4.205 23 C -0.189 4.189 24 H 0.058 0.942 25 H 0.112 0.888 26 H 0.058 0.942 27 H 0.133 0.867 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.051 0.949 31 H 0.039 0.961 32 H -0.004 1.004 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.155 0.845 36 H 0.072 0.928 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.366 -0.628 -17.686 18.493 hybrid contribution 1.014 -0.003 -0.094 1.018 sum 6.380 -0.630 -17.780 18.900 Atomic orbital electron populations 1.22104 0.95192 1.01361 1.02315 1.21358 0.94526 0.94150 0.87123 1.22167 1.01787 0.95151 1.02465 1.48053 1.52069 1.23586 1.07663 1.18707 0.94331 0.93112 0.80580 1.22496 1.07281 1.28985 1.05078 0.93758 1.27282 1.06806 0.95173 0.94006 1.70928 1.15642 1.30778 1.39899 0.82972 0.71612 0.75466 0.76350 1.20471 1.20882 1.18541 1.20415 0.77092 0.80044 0.90754 1.90619 1.58086 1.58099 1.42185 1.22311 0.95681 1.08542 0.95062 0.83207 1.23081 0.98439 0.93537 1.03191 1.21946 0.92232 0.94713 0.99764 0.82755 1.21635 1.01598 0.97181 0.97052 1.22991 1.02666 0.91324 1.03503 1.23031 0.90564 1.02114 1.03163 0.94246 0.88844 0.94249 0.86650 0.91703 0.88385 0.94922 0.96122 1.00430 0.93826 0.91021 0.84451 0.92782 0.86229 0.90346 0.89115 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.94 8.42 71.98 0.61 -4.33 16 2 C 0.13 4.16 3.18 44.99 0.14 4.30 16 3 C -0.16 -4.46 9.09 71.98 0.65 -3.80 16 4 N -0.58 -25.54 2.39 -802.14 -1.91 -27.45 16 5 C 0.25 14.07 4.01 85.63 0.34 14.41 16 6 C -0.60 -35.72 8.01 25.60 0.20 -35.51 16 7 H 0.04 2.65 7.55 -2.91 -0.02 2.62 16 8 C -0.04 -2.12 5.46 84.66 0.46 -1.66 16 9 N -0.93 -59.88 13.65 21.45 0.29 -59.59 16 10 Si 1.11 53.02 29.90 68.60 2.05 55.07 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 14 C 0.53 23.22 6.07 87.66 0.53 23.75 16 15 O -0.61 -33.95 16.09 -3.05 -0.05 -34.00 16 16 C -0.20 -5.72 4.43 -11.54 -0.05 -5.78 16 17 H 0.15 3.48 7.56 -2.38 -0.02 3.46 16 18 C -0.15 -3.71 9.76 30.62 0.30 -3.41 16 19 C -0.07 -1.53 5.85 -10.77 -0.06 -1.59 16 20 H 0.15 2.13 8.14 -2.39 -0.02 2.11 16 21 C -0.16 -4.16 5.12 -10.79 -0.06 -4.21 16 22 C -0.17 -3.63 8.72 30.62 0.27 -3.36 16 23 C -0.15 -2.92 10.26 30.62 0.31 -2.60 16 24 H 0.04 1.56 7.30 -2.38 -0.02 1.54 16 25 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.04 1.38 8.10 -2.38 -0.02 1.36 16 27 H 0.12 2.82 5.86 -2.39 -0.01 2.80 16 28 H 0.06 1.74 6.50 -2.39 -0.02 1.72 16 29 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.03 1.12 6.54 -2.39 -0.02 1.11 16 31 H 0.02 1.15 6.08 -2.39 -0.01 1.14 16 32 H -0.02 -1.44 7.37 -2.39 -0.02 -1.45 16 33 H 0.25 16.43 7.22 -92.70 -0.67 15.76 16 34 H 0.07 2.33 7.82 -2.39 -0.02 2.31 16 35 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.05 2.01 7.62 -2.38 -0.02 2.00 16 37 H 0.12 2.00 8.12 -2.39 -0.02 1.98 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -79.87 322.33 5.14 -74.73 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 1.10 Total: 15.03 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 3.66 Total: -23.80 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -1.62 Total: -87.04 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.05 Total: -34.00 kcal Atomic # 14 Polarization: 53.02 SS G_CDS: 2.05 Total: 55.07 kcal Total: -79.87 5.14 -74.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530954522.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.716 kcal (2) G-P(sol) polarization free energy of solvation -79.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds