Wall clock time and date at job start Sun Mar 29 2020 23:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47345 * 2 1 4 4 C 1.50698 * 109.47528 * 240.00038 * 2 1 3 5 5 H 1.08005 * 119.99622 * 275.01797 * 4 2 1 6 6 C 1.37876 * 120.00238 * 95.01942 * 4 2 1 7 7 N 1.31517 * 119.99853 * 184.90194 * 6 4 2 8 8 Si 1.86797 * 120.00102 * 4.89469 * 6 4 2 9 9 H 1.48499 * 109.46868 * 84.80242 * 8 6 4 10 10 H 1.48493 * 109.47399 * 204.80326 * 8 6 4 11 11 H 1.48502 * 109.47088 * 324.80476 * 8 6 4 12 12 N 1.46506 * 109.47105 * 119.99590 * 2 1 3 13 13 C 1.46491 * 119.99643 * 60.00157 * 12 2 1 14 14 C 1.34775 * 120.00172 * 240.00069 * 12 2 1 15 15 O 1.21285 * 119.99815 * 0.02562 * 14 12 2 16 16 C 1.50698 * 119.99952 * 179.97438 * 14 12 2 17 17 H 1.09000 * 115.54827 * 34.32728 * 16 14 12 18 18 C 1.53000 * 117.49521 * 248.62598 * 16 14 12 19 19 C 1.53000 * 60.00011 * 252.50719 * 18 16 14 20 20 H 1.09007 * 117.51510 * 107.47690 * 19 18 16 21 21 C 1.52999 * 117.50546 * 252.51323 * 19 18 16 22 22 C 1.53775 * 113.61607 * 227.75893 * 21 19 18 23 23 C 1.53949 * 87.02098 * 220.04644 * 22 21 19 24 24 C 1.53773 * 113.61716 * 130.14703 * 21 19 18 25 25 H 1.09001 * 109.46730 * 174.83825 * 1 2 3 26 26 H 1.08996 * 109.47152 * 294.84391 * 1 2 3 27 27 H 1.09001 * 109.46730 * 54.84371 * 1 2 3 28 28 H 0.96999 * 119.99617 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.47321 * 90.00115 * 13 12 2 30 30 H 1.08996 * 109.47294 * 209.99839 * 13 12 2 31 31 H 1.08996 * 109.47723 * 330.00230 * 13 12 2 32 32 H 1.08997 * 117.50783 * 359.97438 * 18 16 14 33 33 H 1.09008 * 117.49544 * 145.02450 * 18 16 14 34 34 H 1.09003 * 112.84331 * 358.95543 * 21 19 18 35 35 H 1.09005 * 113.61221 * 334.56623 * 22 21 19 36 36 H 1.09000 * 113.61879 * 105.46659 * 22 21 19 37 37 H 1.09004 * 113.53650 * 270.81445 * 23 22 21 38 38 H 1.08996 * 113.74804 * 139.94300 * 23 22 21 39 39 H 1.09001 * 113.61842 * 254.53508 * 24 21 19 40 40 H 1.09008 * 113.61627 * 25.35315 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1353 -1.7855 -1.2290 6 6 2.3608 0.0121 -2.3579 7 7 2.7068 -0.6131 -3.4619 8 14 2.3139 1.8791 -2.3173 9 1 3.5990 2.3949 -1.7808 10 1 2.1074 2.3991 -3.6928 11 1 1.1982 2.3274 -1.4459 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0930 1.4281 14 6 2.7932 -0.0355 2.0834 15 8 3.0858 1.1258 1.8916 16 6 3.2950 -0.7457 3.3142 17 1 3.5213 -1.8043 3.1866 18 6 2.7315 -0.3011 4.6654 19 6 4.1702 0.0522 4.2828 20 1 4.3833 1.0908 4.0295 21 6 5.2959 -0.6968 4.9986 22 6 6.4074 0.2233 5.5303 23 6 7.4078 -0.8517 5.0683 24 6 6.3468 -1.2879 4.0441 25 1 -0.3633 -1.0235 -0.0925 26 1 -0.3633 0.4318 0.9325 27 1 -0.3633 0.5918 -0.8402 28 1 2.9381 -0.1048 -4.2550 29 1 2.4158 -2.7376 0.9718 30 1 1.6238 -2.2851 2.5002 31 1 0.6905 -2.3002 0.9847 32 1 1.9982 0.5053 4.6643 33 1 2.5871 -1.0673 5.4272 34 1 4.9276 -1.4087 5.7374 35 1 6.4939 1.1634 4.9853 36 1 6.3808 0.3606 6.6113 37 1 7.6179 -1.6056 5.8271 38 1 8.3113 -0.4445 4.6145 39 1 6.2713 -2.3690 3.9270 40 1 6.4158 -0.7627 3.0914 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579719198.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:18 Heat of formation + Delta-G solvation = 1.327197 kcal Electronic energy + Delta-G solvation = -18915.218135 eV Core-core repulsion = 16117.254199 eV Total energy + Delta-G solvation = -2797.963936 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.86222 -38.55660 -35.90572 -34.96402 -32.61159 -30.35581 -26.44476 -26.12284 -25.60556 -25.22629 -23.84011 -21.21408 -20.24907 -19.36027 -18.14715 -17.24555 -16.41076 -15.74230 -15.41979 -14.92125 -14.51968 -14.16359 -13.47751 -13.15338 -12.58390 -12.52596 -12.43300 -12.35121 -12.31451 -12.04332 -11.83265 -11.61660 -11.38500 -11.04177 -10.80756 -10.66718 -10.64935 -10.51595 -10.41148 -9.84973 -9.79180 -9.69428 -9.27031 -8.95610 -8.59196 -7.62674 -6.15610 -4.17330 3.10802 3.32470 3.39385 3.46795 3.79809 4.05872 4.39975 4.56144 4.64987 4.69844 4.87290 5.04752 5.12057 5.17850 5.25592 5.46272 5.47347 5.64838 5.72339 5.74259 5.79567 5.80615 5.88251 5.97211 6.04361 6.10493 6.20794 6.27246 6.36795 6.37623 6.41425 6.54331 6.60204 6.94989 7.09751 7.50341 7.66906 8.19160 8.53085 8.86418 9.00685 9.47472 10.96490 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.025556 B = 0.005766 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.365752 B = 4854.623948 C = 5176.193564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.222 3.778 3 H 0.064 0.936 4 C -0.524 4.524 5 H 0.077 0.923 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.875 3.125 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.586 5.586 13 C 0.088 3.912 14 C 0.533 3.467 15 O -0.559 6.559 16 C -0.177 4.177 17 H 0.119 0.881 18 C -0.153 4.153 19 C -0.112 4.112 20 H 0.116 0.884 21 C -0.081 4.081 22 C -0.133 4.133 23 C -0.145 4.145 24 C -0.135 4.135 25 H 0.050 0.950 26 H 0.026 0.974 27 H 0.055 0.945 28 H 0.266 0.734 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 -2.438 17.284 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.121 3.879 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.095 0.905 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.702 3.298 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.189 1.189 12 N -0.316 5.316 13 C -0.056 4.056 14 C 0.320 3.680 15 O -0.439 6.439 16 C -0.198 4.198 17 H 0.137 0.863 18 C -0.191 4.191 19 C -0.131 4.131 20 H 0.134 0.866 21 C -0.099 4.099 22 C -0.170 4.170 23 C -0.182 4.182 24 C -0.172 4.172 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.896 -1.823 16.937 17.280 hybrid contribution -0.041 0.686 -0.282 0.743 sum 2.855 -1.137 16.655 16.936 Atomic orbital electron populations 1.22217 0.98403 1.00837 0.99105 1.19320 0.90748 0.94929 0.82880 0.91859 1.21124 1.44555 0.95701 0.94791 0.90460 1.24957 0.93798 0.98477 0.95222 1.69893 1.45320 1.36031 1.01705 0.86892 0.79901 0.86150 0.76892 1.19652 1.21380 1.18873 1.48216 1.48875 1.11739 1.22786 1.21561 1.01355 0.83075 0.99614 1.19554 0.78620 0.86413 0.83410 1.90616 1.58833 1.17417 1.77070 1.22311 1.06465 1.00541 0.90531 0.86318 1.23007 0.97252 1.03203 0.95617 1.22356 0.90675 1.00183 0.99892 0.86604 1.22152 0.92704 0.97517 0.97525 1.22970 0.95688 0.97800 1.00551 1.22845 0.97391 0.98853 0.99104 1.22931 0.95422 1.00741 0.98149 0.93108 0.95498 0.92607 0.92419 0.92997 0.92577 0.91167 0.88613 0.88341 0.89294 0.89879 0.91703 0.90506 0.91550 0.91639 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.04 37.16 0.34 -2.81 16 2 C 0.22 5.46 2.30 -69.08 -0.16 5.31 16 3 H 0.06 1.72 4.05 -51.93 -0.21 1.51 16 4 C -0.52 -14.62 8.82 -34.44 -0.30 -14.93 16 5 H 0.08 2.28 7.67 -52.48 -0.40 1.88 16 6 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 7 N -0.89 -27.10 13.96 55.43 0.77 -26.32 16 8 Si 0.87 22.58 26.99 -169.99 -4.59 17.99 16 9 H -0.27 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.26 -6.59 6.82 56.52 0.39 -6.21 16 12 N -0.59 -12.50 2.75 -175.27 -0.48 -12.99 16 13 C 0.09 1.48 9.10 59.84 0.54 2.02 16 14 C 0.53 11.15 7.46 -10.99 -0.08 11.07 16 15 O -0.56 -13.86 15.59 5.55 0.09 -13.77 16 16 C -0.18 -2.73 4.35 -91.77 -0.40 -3.13 16 17 H 0.12 1.64 7.26 -51.93 -0.38 1.26 16 18 C -0.15 -1.93 9.92 -26.73 -0.27 -2.19 16 19 C -0.11 -1.54 5.04 -90.62 -0.46 -2.00 16 20 H 0.12 1.83 7.50 -51.92 -0.39 1.44 16 21 C -0.08 -0.89 3.87 -89.81 -0.35 -1.24 16 22 C -0.13 -1.34 7.65 -25.83 -0.20 -1.54 16 23 C -0.14 -1.39 8.09 -25.83 -0.21 -1.60 16 24 C -0.14 -1.54 7.49 -25.92 -0.19 -1.73 16 25 H 0.05 1.01 6.88 -51.93 -0.36 0.65 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.75 6.64 -51.93 -0.34 0.40 16 31 H 0.07 1.15 6.53 -51.93 -0.34 0.81 16 32 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.10 0.98 8.13 -51.92 -0.42 0.55 16 34 H 0.09 0.86 8.07 -51.93 -0.42 0.44 16 35 H 0.08 0.90 7.98 -51.93 -0.41 0.48 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.15 8.10 -51.92 -0.42 0.73 16 LS Contribution 321.18 15.07 4.84 4.84 Total: -1.00 -32.31 321.18 -7.83 -40.14 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.63 Total: 0.67 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -1.83 Total: -10.57 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.29 Total: -39.31 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.09 Total: -13.77 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.59 Total: 17.99 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.31 -7.83 -40.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579719198.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.471 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds