Wall clock time and date at job start Sun Mar 29 2020 23:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47345 * 2 1 4 4 C 1.50698 * 109.47528 * 240.00038 * 2 1 3 5 5 H 1.08005 * 119.99622 * 275.01797 * 4 2 1 6 6 C 1.37876 * 120.00238 * 95.01942 * 4 2 1 7 7 N 1.31517 * 119.99853 * 184.90194 * 6 4 2 8 8 Si 1.86797 * 120.00102 * 4.89469 * 6 4 2 9 9 H 1.48499 * 109.46868 * 84.80242 * 8 6 4 10 10 H 1.48493 * 109.47399 * 204.80326 * 8 6 4 11 11 H 1.48502 * 109.47088 * 324.80476 * 8 6 4 12 12 N 1.46506 * 109.47105 * 119.99590 * 2 1 3 13 13 C 1.46491 * 119.99643 * 60.00157 * 12 2 1 14 14 C 1.34775 * 120.00172 * 240.00069 * 12 2 1 15 15 O 1.21285 * 119.99815 * 0.02562 * 14 12 2 16 16 C 1.50698 * 119.99952 * 179.97438 * 14 12 2 17 17 H 1.09000 * 115.54827 * 34.32728 * 16 14 12 18 18 C 1.53000 * 117.49521 * 248.62598 * 16 14 12 19 19 C 1.53000 * 60.00011 * 252.50719 * 18 16 14 20 20 H 1.09007 * 117.51510 * 107.47690 * 19 18 16 21 21 C 1.52999 * 117.50546 * 252.51323 * 19 18 16 22 22 C 1.53775 * 113.61607 * 227.75893 * 21 19 18 23 23 C 1.53949 * 87.02098 * 220.04644 * 22 21 19 24 24 C 1.53773 * 113.61716 * 130.14703 * 21 19 18 25 25 H 1.09001 * 109.46730 * 174.83825 * 1 2 3 26 26 H 1.08996 * 109.47152 * 294.84391 * 1 2 3 27 27 H 1.09001 * 109.46730 * 54.84371 * 1 2 3 28 28 H 0.96999 * 119.99617 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.47321 * 90.00115 * 13 12 2 30 30 H 1.08996 * 109.47294 * 209.99839 * 13 12 2 31 31 H 1.08996 * 109.47723 * 330.00230 * 13 12 2 32 32 H 1.08997 * 117.50783 * 359.97438 * 18 16 14 33 33 H 1.09008 * 117.49544 * 145.02450 * 18 16 14 34 34 H 1.09003 * 112.84331 * 358.95543 * 21 19 18 35 35 H 1.09005 * 113.61221 * 334.56623 * 22 21 19 36 36 H 1.09000 * 113.61879 * 105.46659 * 22 21 19 37 37 H 1.09004 * 113.53650 * 270.81445 * 23 22 21 38 38 H 1.08996 * 113.74804 * 139.94300 * 23 22 21 39 39 H 1.09001 * 113.61842 * 254.53508 * 24 21 19 40 40 H 1.09008 * 113.61627 * 25.35315 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1353 -1.7855 -1.2290 6 6 2.3608 0.0121 -2.3579 7 7 2.7068 -0.6131 -3.4619 8 14 2.3139 1.8791 -2.3173 9 1 3.5990 2.3949 -1.7808 10 1 2.1074 2.3991 -3.6928 11 1 1.1982 2.3274 -1.4459 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0930 1.4281 14 6 2.7932 -0.0355 2.0834 15 8 3.0858 1.1258 1.8916 16 6 3.2950 -0.7457 3.3142 17 1 3.5213 -1.8043 3.1866 18 6 2.7315 -0.3011 4.6654 19 6 4.1702 0.0522 4.2828 20 1 4.3833 1.0908 4.0295 21 6 5.2959 -0.6968 4.9986 22 6 6.4074 0.2233 5.5303 23 6 7.4078 -0.8517 5.0683 24 6 6.3468 -1.2879 4.0441 25 1 -0.3633 -1.0235 -0.0925 26 1 -0.3633 0.4318 0.9325 27 1 -0.3633 0.5918 -0.8402 28 1 2.9381 -0.1048 -4.2550 29 1 2.4158 -2.7376 0.9718 30 1 1.6238 -2.2851 2.5002 31 1 0.6905 -2.3002 0.9847 32 1 1.9982 0.5053 4.6643 33 1 2.5871 -1.0673 5.4272 34 1 4.9276 -1.4087 5.7374 35 1 6.4939 1.1634 4.9853 36 1 6.3808 0.3606 6.6113 37 1 7.6179 -1.6056 5.8271 38 1 8.3113 -0.4445 4.6145 39 1 6.2713 -2.3690 3.9270 40 1 6.4158 -0.7627 3.0914 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579719198.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:18 Heat of formation + Delta-G solvation = -17.901719 kcal Electronic energy + Delta-G solvation = -18916.051963 eV Core-core repulsion = 16117.254199 eV Total energy + Delta-G solvation = -2798.797764 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.21382 -39.72789 -37.40084 -36.39757 -34.69900 -32.21842 -27.73314 -27.40435 -27.17126 -26.44020 -25.19586 -22.43500 -21.69708 -20.25099 -19.72552 -19.23298 -18.02679 -17.32489 -16.45293 -16.37983 -15.90243 -15.80668 -15.07808 -14.61754 -14.28550 -14.23262 -13.86503 -13.45339 -13.31328 -13.28707 -13.24716 -13.08879 -12.94264 -12.66930 -12.55369 -12.33317 -11.87419 -11.84987 -11.50453 -11.36614 -11.30225 -10.85934 -10.82018 -10.73481 -10.54463 -9.36130 -8.40656 -6.43893 1.22628 1.29115 1.37557 1.61837 2.23295 2.27798 2.86929 3.01612 3.54472 3.69282 3.79801 3.93374 3.98461 4.14578 4.20180 4.31790 4.42150 4.48100 4.54367 4.65230 4.72534 4.79007 4.82579 4.90072 4.90303 4.92600 4.99181 5.06549 5.10274 5.12611 5.13738 5.30418 5.35533 5.40695 5.50984 5.69458 5.81798 6.13952 6.60695 6.76212 7.21133 7.38666 8.74964 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.025556 B = 0.005766 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.365752 B = 4854.623948 C = 5176.193564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.219 3.781 3 H 0.036 0.964 4 C -0.519 4.519 5 H 0.053 0.947 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.925 3.075 9 H -0.288 1.288 10 H -0.273 1.273 11 H -0.252 1.252 12 N -0.595 5.595 13 C 0.085 3.915 14 C 0.521 3.479 15 O -0.610 6.610 16 C -0.190 4.190 17 H 0.141 0.859 18 C -0.124 4.124 19 C -0.115 4.115 20 H 0.084 0.916 21 C -0.072 4.072 22 C -0.134 4.134 23 C -0.136 4.136 24 C -0.145 4.145 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.269 0.731 29 H 0.044 0.956 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.141 0.859 34 H 0.118 0.882 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.086 -3.425 20.310 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.117 3.883 3 H 0.054 0.946 4 C -0.557 4.557 5 H 0.071 0.929 6 C -0.170 4.170 7 N -0.573 5.573 8 Si 0.750 3.250 9 H -0.214 1.214 10 H -0.199 1.199 11 H -0.176 1.176 12 N -0.325 5.325 13 C -0.057 4.057 14 C 0.311 3.689 15 O -0.493 6.493 16 C -0.210 4.210 17 H 0.158 0.842 18 C -0.161 4.161 19 C -0.134 4.134 20 H 0.102 0.898 21 C -0.090 4.090 22 C -0.171 4.171 23 C -0.173 4.173 24 C -0.182 4.182 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.159 0.841 34 H 0.136 0.864 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.247 -2.837 19.980 20.305 hybrid contribution 0.188 0.950 -1.187 1.532 sum 2.434 -1.887 18.794 19.044 Atomic orbital electron populations 1.22065 0.95687 1.01939 0.99992 1.19135 0.92754 0.93394 0.83061 0.94562 1.21354 1.43542 0.94748 0.96092 0.92888 1.25604 0.94149 1.02066 0.95172 1.69985 1.47360 1.37466 1.02446 0.86093 0.79339 0.81994 0.77544 1.21421 1.19868 1.17596 1.48210 1.49020 1.13443 1.21797 1.21792 1.01178 0.80233 1.02518 1.20528 0.77565 0.86097 0.84700 1.90583 1.60451 1.19857 1.78430 1.22225 1.08669 1.01038 0.89103 0.84154 1.23171 0.95705 1.03324 0.93878 1.22380 0.92681 0.98761 0.99594 0.89757 1.22227 0.91562 0.97766 0.97480 1.22961 0.95534 0.97111 1.01531 1.22851 0.96683 0.98994 0.98807 1.22927 0.97003 1.00998 0.97321 0.91637 0.93380 0.93198 0.92218 0.93700 0.88226 0.90747 0.89564 0.84120 0.86381 0.91651 0.89711 0.88254 0.91874 0.90620 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.74 9.04 71.98 0.65 -5.09 16 2 C 0.22 10.80 2.30 44.24 0.10 10.90 16 3 H 0.04 2.00 4.05 -2.39 -0.01 1.99 16 4 C -0.52 -29.52 8.82 25.60 0.23 -29.29 16 5 H 0.05 3.21 7.67 -2.91 -0.02 3.19 16 6 C 0.03 1.76 5.47 84.65 0.46 2.22 16 7 N -0.93 -58.02 13.96 21.45 0.30 -57.72 16 8 Si 0.92 47.59 26.99 68.60 1.85 49.44 16 9 H -0.29 -15.46 7.11 99.48 0.71 -14.75 16 10 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.25 -12.34 6.82 99.48 0.68 -11.66 16 12 N -0.60 -25.04 2.75 -826.81 -2.28 -27.31 16 13 C 0.09 2.69 9.10 127.77 1.16 3.86 16 14 C 0.52 21.71 7.46 87.66 0.65 22.37 16 15 O -0.61 -31.06 15.59 -3.05 -0.05 -31.11 16 16 C -0.19 -5.44 4.35 -11.54 -0.05 -5.49 16 17 H 0.14 3.41 7.26 -2.39 -0.02 3.39 16 18 C -0.12 -2.67 9.92 30.59 0.30 -2.36 16 19 C -0.12 -2.97 5.04 -10.79 -0.05 -3.03 16 20 H 0.08 2.73 7.50 -2.38 -0.02 2.71 16 21 C -0.07 -1.38 3.87 -10.27 -0.04 -1.42 16 22 C -0.13 -2.42 7.65 31.18 0.24 -2.19 16 23 C -0.14 -2.32 8.09 31.18 0.25 -2.06 16 24 C -0.14 -3.09 7.49 31.12 0.23 -2.85 16 25 H 0.06 2.49 6.88 -2.39 -0.02 2.47 16 26 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 29 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.10 2.28 6.64 -2.39 -0.02 2.26 16 31 H 0.07 2.28 6.53 -2.39 -0.02 2.27 16 32 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.14 1.92 8.13 -2.38 -0.02 1.90 16 34 H 0.12 1.65 8.07 -2.39 -0.02 1.63 16 35 H 0.06 1.40 7.98 -2.38 -0.02 1.38 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.05 1.48 8.10 -2.38 -0.02 1.46 16 Total: -1.00 -73.20 321.18 4.94 -68.26 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.97 Total: 12.89 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 4.14 Total: -14.45 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -1.98 Total: -85.03 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.05 Total: -31.11 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.85 Total: 49.44 kcal Total: -73.20 4.94 -68.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579719198.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.359 kcal (2) G-P(sol) polarization free energy of solvation -73.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds