Wall clock time and date at job start Sun Mar 29 2020 22:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47411 * 2 1 4 4 N 1.46503 * 109.47434 * 179.97438 * 3 2 1 5 5 C 1.37091 * 119.99922 * 265.51369 * 4 3 2 6 6 H 1.08006 * 119.99535 * 145.59263 * 5 4 3 7 7 C 1.38948 * 120.00508 * 325.59543 * 5 4 3 8 8 N 1.31412 * 119.99452 * 338.51024 * 7 5 4 9 9 Si 1.86799 * 120.00368 * 158.50792 * 7 5 4 10 10 H 1.48497 * 109.47073 * 90.00064 * 9 7 5 11 11 H 1.48500 * 109.47392 * 209.99982 * 9 7 5 12 12 H 1.48503 * 109.47303 * 330.00132 * 9 7 5 13 13 C 1.34777 * 119.99754 * 85.50828 * 4 3 2 14 14 O 1.21292 * 120.00159 * 0.02562 * 13 4 3 15 15 C 1.50693 * 119.99732 * 179.97438 * 13 4 3 16 16 C 1.53949 * 113.58114 * 80.76496 * 15 13 4 17 17 C 1.53152 * 86.69813 * 139.37060 * 16 15 13 18 18 C 1.52906 * 121.13871 * 100.81849 * 17 16 15 19 19 C 1.53951 * 86.78775 * 100.82233 * 18 17 16 20 20 C 1.52909 * 121.14172 * 209.38259 * 17 16 15 21 21 C 1.52909 * 88.03788 * 335.09846 * 17 16 15 22 22 H 1.08996 * 109.47214 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47114 * 299.99960 * 1 2 3 24 24 H 1.08996 * 109.47106 * 59.99781 * 1 2 3 25 25 H 1.08997 * 109.47377 * 240.00076 * 2 1 3 26 26 H 1.09005 * 109.47582 * 119.99865 * 2 1 3 27 27 H 1.09006 * 109.46949 * 59.99939 * 3 2 1 28 28 H 1.08996 * 109.47164 * 300.00183 * 3 2 1 29 29 H 0.97003 * 120.00014 * 180.02562 * 8 7 5 30 30 H 1.08998 * 112.82693 * 309.66884 * 15 13 4 31 31 H 1.08998 * 113.66092 * 253.88663 * 16 15 13 32 32 H 1.09002 * 113.66484 * 24.93656 * 16 15 13 33 33 H 1.09001 * 113.66373 * 215.30002 * 18 17 16 34 34 H 1.09000 * 113.66165 * 346.35203 * 18 17 16 35 35 H 1.08989 * 113.58143 * 270.13737 * 19 18 17 36 36 H 1.08998 * 113.64788 * 139.34245 * 19 18 17 37 37 H 1.09004 * 113.66687 * 13.64663 * 20 17 16 38 38 H 1.09000 * 113.66687 * 144.70868 * 20 17 16 39 39 H 1.08997 * 113.66721 * 270.42289 * 21 17 16 40 40 H 1.09009 * 113.74279 * 139.37774 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1900 1.5356 1.1845 6 1 5.1283 1.0150 1.3078 7 6 3.6772 2.2994 2.2258 8 7 2.8021 3.2475 1.9760 9 14 4.2316 1.9787 3.9805 10 1 5.4214 2.8138 4.2842 11 1 3.1325 2.3236 4.9178 12 1 4.5816 0.5438 4.1347 13 6 4.1794 1.3509 -1.1627 14 8 3.5734 1.2690 -2.2102 15 6 5.6863 1.3515 -1.1621 16 6 6.3026 -0.0187 -0.8266 17 6 7.3311 0.2745 -1.9228 18 6 8.7368 0.7670 -1.5769 19 6 9.2067 -0.6810 -1.8061 20 6 7.9807 -0.8567 -2.7207 21 6 6.3027 1.2059 -2.5654 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6767 1.9564 -0.8899 29 1 2.4444 3.7810 2.7028 30 1 6.1086 2.1731 -0.5835 31 1 6.7312 -0.0724 0.1742 32 1 5.6484 -0.8603 -1.0543 33 1 9.1411 1.4775 -2.2978 34 1 8.8411 1.1026 -0.5451 35 1 9.1726 -1.2977 -0.9082 36 1 10.1579 -0.7537 -2.3333 37 1 7.4812 -1.8183 -2.6027 38 1 8.1727 -0.6026 -3.7631 39 1 5.6485 0.7082 -3.2811 40 1 6.7301 2.1306 -2.9535 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592584757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:06 Heat of formation + Delta-G solvation = -20.475027 kcal Electronic energy + Delta-G solvation = -19301.560692 eV Core-core repulsion = 16502.651341 eV Total energy + Delta-G solvation = -2798.909351 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.64684 -39.85940 -37.03645 -35.42131 -34.44323 -33.09562 -28.07398 -27.00659 -26.63794 -26.53679 -25.23618 -22.82166 -21.90819 -20.71114 -18.83641 -18.53262 -17.87487 -16.63688 -16.37016 -16.26385 -15.99807 -15.68561 -15.33554 -14.94936 -14.10850 -13.91933 -13.65686 -13.54917 -13.18056 -13.15620 -12.94566 -12.91296 -12.71152 -12.61160 -12.37320 -12.07931 -11.99400 -11.82520 -11.65013 -11.53661 -11.12828 -10.98342 -10.91645 -10.75196 -10.12815 -9.46424 -8.28838 -6.01539 1.41013 1.48094 1.59317 2.03232 2.32797 2.98878 3.10792 3.52198 3.65476 3.77108 3.96705 3.99806 4.04706 4.15020 4.29338 4.46770 4.58970 4.62877 4.65677 4.80228 4.86250 4.88936 4.91904 4.95349 4.96320 5.05085 5.07151 5.14550 5.16930 5.17311 5.20100 5.35071 5.46865 5.47529 5.56630 5.61854 5.70561 6.03658 6.46441 7.14628 7.63873 8.07367 8.73825 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.018696 B = 0.007614 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.270871 B = 3676.480077 C = 4626.838457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 C 0.112 3.888 4 N -0.449 5.449 5 C -0.348 4.348 6 H 0.101 0.899 7 C 0.000 4.000 8 N -0.894 5.894 9 Si 0.980 3.020 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.260 1.260 13 C 0.460 3.540 14 O -0.641 6.641 15 C -0.113 4.113 16 C -0.084 4.084 17 C -0.102 4.102 18 C -0.115 4.115 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.104 4.104 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.037 0.963 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.025 0.975 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.539 -6.609 -1.508 10.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 C -0.012 4.012 4 N -0.165 5.165 5 C -0.475 4.475 6 H 0.118 0.882 7 C -0.203 4.203 8 N -0.532 5.532 9 Si 0.803 3.197 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.184 1.184 13 C 0.251 3.749 14 O -0.530 6.530 15 C -0.134 4.134 16 C -0.122 4.122 17 C -0.102 4.102 18 C -0.152 4.152 19 C -0.164 4.164 20 C -0.164 4.164 21 C -0.141 4.141 22 H 0.092 0.908 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.109 -6.495 -1.873 10.557 hybrid contribution -0.427 0.421 0.778 0.982 sum 7.682 -6.074 -1.094 9.854 Atomic orbital electron populations 1.21606 0.93601 1.02375 1.01696 1.21711 0.97302 0.96880 1.00294 1.21432 0.81945 0.96272 1.01523 1.43777 1.05046 1.62200 1.05511 1.19785 1.08091 1.29591 0.90042 0.88185 1.26197 0.97033 0.93010 1.04045 1.70045 1.31456 1.17598 1.34111 0.85145 0.77983 0.79318 0.77260 1.19610 1.20719 1.18394 1.21097 0.91078 0.79824 0.82948 1.90448 1.71483 1.58134 1.32951 1.22375 0.90612 1.00485 0.99927 1.22429 0.96326 0.94591 0.98866 1.22479 0.93420 0.97595 0.96718 1.22705 0.92703 0.97717 1.02061 1.22763 0.97815 0.96004 0.99815 1.22789 0.97082 0.97462 0.99044 1.22620 0.96993 0.99804 0.94732 0.90796 0.92475 0.93077 0.94424 0.92551 0.88745 0.95660 0.91897 0.88387 0.90377 0.91548 0.88855 0.91368 0.90060 0.89794 0.91801 0.89185 0.91217 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.91 71.98 0.71 -3.88 16 2 C -0.12 -5.28 6.23 30.59 0.19 -5.09 16 3 C 0.11 5.70 4.91 86.38 0.42 6.12 16 4 N -0.45 -23.58 2.55 -635.53 -1.62 -25.20 16 5 C -0.35 -17.69 8.57 84.04 0.72 -16.97 16 6 H 0.10 4.78 6.39 -2.91 -0.02 4.76 16 7 C 0.00 -0.02 4.94 84.93 0.42 0.40 16 8 N -0.89 -48.01 11.31 21.66 0.24 -47.76 16 9 Si 0.98 39.12 29.60 68.60 2.03 41.15 16 10 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 11 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 12 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 13 C 0.46 23.67 7.13 87.65 0.63 24.30 16 14 O -0.64 -36.25 15.56 -3.07 -0.05 -36.30 16 15 C -0.11 -4.69 2.90 -10.90 -0.03 -4.72 16 16 C -0.08 -2.92 6.74 30.97 0.21 -2.72 16 17 C -0.10 -2.93 1.11 -52.23 -0.06 -2.99 16 18 C -0.11 -2.64 7.84 30.88 0.24 -2.40 16 19 C -0.13 -2.48 8.08 31.23 0.25 -2.23 16 20 C -0.13 -2.95 7.84 30.89 0.24 -2.70 16 21 C -0.10 -3.69 7.16 30.89 0.22 -3.47 16 22 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 27 H 0.09 5.04 5.34 -2.38 -0.01 5.03 16 28 H 0.02 1.36 7.56 -2.39 -0.02 1.34 16 29 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 30 H 0.10 4.15 7.93 -2.39 -0.02 4.13 16 31 H 0.08 2.54 7.79 -2.39 -0.02 2.53 16 32 H 0.07 2.45 8.09 -2.39 -0.02 2.43 16 33 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 2.76 7.44 -2.39 -0.02 2.74 16 40 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 Total: -1.00 -62.21 320.29 5.77 -56.44 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.99 Total: 28.02 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 4.17 Total: -16.36 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -1.38 Total: -72.96 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.05 Total: -36.30 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -62.21 5.77 -56.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592584757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.966 kcal (2) G-P(sol) polarization free energy of solvation -62.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds