Wall clock time and date at job start Sun Mar 29 2020 23:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47057 * 2 1 4 4 C 1.52999 * 109.47192 * 119.99778 * 2 1 3 5 5 C 1.50699 * 109.47271 * 295.00544 * 4 2 1 6 6 H 1.08005 * 120.00184 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00015 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99797 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99976 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47076 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46975 * 120.00155 * 9 7 5 12 12 H 1.48499 * 109.47172 * 240.00194 * 9 7 5 13 13 C 1.52995 * 109.47466 * 240.00489 * 2 1 3 14 14 N 1.46896 * 109.47406 * 174.65894 * 13 2 1 15 15 C 1.46905 * 110.99814 * 287.71159 * 14 13 2 16 16 C 1.46896 * 111.00228 * 163.75667 * 14 13 2 17 17 H 1.09001 * 109.47121 * 309.99939 * 16 14 13 18 18 C 1.52997 * 109.47138 * 69.99840 * 16 14 13 19 19 C 1.50707 * 109.47398 * 190.00060 * 16 14 13 20 20 C 1.34505 * 125.79394 * 140.00081 * 19 16 14 21 21 C 1.41376 * 106.84541 * 180.02562 * 20 19 16 22 22 C 1.34520 * 106.84079 * 359.97438 * 21 20 19 23 23 O 1.34304 * 125.78245 * 319.69090 * 19 16 14 24 24 H 1.09000 * 109.47181 * 56.22427 * 1 2 3 25 25 H 1.08995 * 109.47246 * 296.22146 * 1 2 3 26 26 H 1.08994 * 109.46945 * 176.22028 * 1 2 3 27 27 H 1.09006 * 109.46948 * 55.00224 * 4 2 1 28 28 H 1.08994 * 109.47625 * 175.00216 * 4 2 1 29 29 H 0.96996 * 119.99729 * 179.97438 * 8 7 5 30 30 H 1.09005 * 109.46946 * 294.65331 * 13 2 1 31 31 H 1.08993 * 109.47224 * 54.65020 * 13 2 1 32 32 H 1.08995 * 109.46933 * 54.05470 * 15 14 13 33 33 H 1.08999 * 109.46920 * 174.05767 * 15 14 13 34 34 H 1.09001 * 109.47090 * 294.05379 * 15 14 13 35 35 H 1.09001 * 109.46987 * 179.97438 * 18 16 14 36 36 H 1.08995 * 109.47508 * 299.99950 * 18 16 14 37 37 H 1.08996 * 109.47409 * 60.00349 * 18 16 14 38 38 H 1.08006 * 126.57926 * 359.95905 * 20 19 16 39 39 H 1.07999 * 126.58603 * 180.02562 * 21 20 19 40 40 H 1.08000 * 125.79553 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 2.6756 -1.5193 3.8512 9 14 1.4986 0.5628 5.2496 10 1 0.7420 1.7743 4.8434 11 1 0.6439 -0.2858 6.1184 12 1 2.7169 0.9667 5.9966 13 6 2.0401 -0.7211 -1.2492 14 7 3.5034 -0.6105 -1.3154 15 6 3.9125 0.7552 -1.6698 16 6 4.0633 -1.5889 -2.2572 17 1 3.6596 -2.5772 -2.0371 18 6 3.6897 -1.1922 -3.6869 19 6 5.5638 -1.6171 -2.1195 20 6 6.3365 -2.7175 -2.1549 21 6 7.6722 -2.2857 -1.9870 22 6 7.6359 -0.9471 -1.8594 23 8 6.3567 -0.5470 -1.9463 24 1 -0.3633 0.5713 -0.8542 25 1 -0.3633 0.4540 0.9219 26 1 -0.3633 -1.0254 -0.0677 27 1 1.6054 -1.7198 1.2952 28 1 3.1263 -0.7994 1.2057 29 1 2.9228 -1.8422 4.7318 30 1 1.7570 -1.7727 -1.2027 31 1 1.6007 -0.2656 -2.1366 32 1 3.4557 1.4625 -0.9777 33 1 4.9977 0.8367 -1.6090 34 1 3.5877 0.9797 -2.6858 35 1 4.1056 -1.9181 -4.3857 36 1 2.6045 -1.1719 -3.7865 37 1 4.0934 -0.2040 -3.9070 38 1 6.0008 -3.7357 -2.2855 39 1 8.5528 -2.9105 -1.9659 40 1 8.4908 -0.3028 -1.7163 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602440431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:25 Heat of formation + Delta-G solvation = 10.492803 kcal Electronic energy + Delta-G solvation = -18988.828986 eV Core-core repulsion = 16191.262501 eV Total energy + Delta-G solvation = -2797.566486 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.38139 -38.24648 -34.81647 -32.89688 -32.17530 -30.63776 -28.29419 -27.10840 -26.55584 -24.83961 -22.99247 -21.62895 -21.38767 -19.75890 -18.73046 -17.02516 -16.25080 -15.87729 -15.58663 -14.92594 -14.57297 -14.21237 -13.73230 -13.30340 -13.13344 -12.74947 -12.55709 -12.48045 -12.14760 -11.93906 -11.86902 -11.44841 -11.25129 -11.11771 -11.01003 -10.79938 -10.71864 -10.26578 -10.12260 -9.71079 -9.59203 -9.02532 -8.80688 -8.30356 -8.19612 -7.77986 -5.84719 -3.84990 1.95450 2.80788 3.19922 3.38147 3.45595 3.49112 4.25532 4.57006 4.73788 5.07354 5.13933 5.25310 5.31829 5.50220 5.52598 5.63744 5.65572 5.75843 5.86834 5.94569 5.99783 6.05030 6.10553 6.14347 6.24072 6.28494 6.40530 6.49744 6.60729 6.67461 7.01605 7.06708 7.33133 7.34013 7.47051 7.55602 7.89538 8.11375 8.25605 8.61251 9.23214 9.76933 11.26447 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.021901 B = 0.005786 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.174687 B = 4838.151647 C = 5622.774269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 H 0.056 0.944 4 C 0.035 3.965 5 C -0.512 4.512 6 H 0.052 0.948 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.884 3.116 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.063 3.937 14 N -0.520 5.520 15 C 0.015 3.985 16 C 0.158 3.842 17 H 0.108 0.892 18 C -0.185 4.185 19 C 0.022 3.978 20 C -0.217 4.217 21 C -0.213 4.213 22 C -0.053 4.053 23 O -0.165 6.165 24 H 0.027 0.973 25 H 0.065 0.935 26 H 0.043 0.957 27 H 0.008 0.992 28 H 0.033 0.967 29 H 0.257 0.743 30 H 0.068 0.932 31 H 0.023 0.977 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.023 0.977 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.519 0.064 -15.403 16.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 H 0.075 0.925 4 C -0.003 4.003 5 C -0.550 4.550 6 H 0.070 0.930 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.064 4.064 14 N -0.242 5.242 15 C -0.132 4.132 16 C 0.049 3.951 17 H 0.126 0.874 18 C -0.244 4.244 19 C -0.029 4.029 20 C -0.237 4.237 21 C -0.232 4.232 22 C -0.121 4.121 23 O -0.060 6.060 24 H 0.047 0.953 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.027 0.973 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 5.665 0.150 -14.781 15.830 hybrid contribution -0.268 0.380 0.254 0.530 sum 5.397 0.530 -14.527 15.506 Atomic orbital electron populations 1.21717 0.96439 1.00432 1.00544 1.21228 0.94135 0.99334 0.95525 0.92536 1.19050 0.97447 0.94466 0.89288 1.21351 1.34173 1.08099 0.91384 0.92960 1.24996 0.95531 0.95092 0.98872 1.69993 1.39248 1.21259 1.22918 0.86663 0.78173 0.80164 0.83726 1.19910 1.21241 1.21214 1.22300 0.85358 1.00971 0.97730 1.62123 1.11046 1.04165 1.46886 1.22639 1.01998 0.90116 0.98471 1.20315 0.85126 0.98699 0.90942 0.87429 1.22503 1.02099 1.02604 0.97180 1.22343 0.92760 0.84658 1.03145 1.21472 0.92902 0.99166 1.10145 1.21729 0.97971 0.95051 1.08434 1.23997 0.85231 0.95936 1.06926 1.84114 1.16670 1.35289 1.69954 0.95346 0.91590 0.93768 0.97317 0.94895 0.93370 0.91378 0.95925 0.90766 0.90528 0.95899 0.91916 0.91544 0.91748 0.83786 0.83895 0.78627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 9.06 37.16 0.34 -2.18 16 2 C -0.08 -1.72 2.36 -90.62 -0.21 -1.93 16 3 H 0.06 1.19 6.50 -51.92 -0.34 0.86 16 4 C 0.03 0.90 4.39 -27.88 -0.12 0.78 16 5 C -0.51 -14.62 8.35 -34.44 -0.29 -14.91 16 6 H 0.05 1.46 7.07 -52.48 -0.37 1.09 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -27.64 13.29 55.43 0.74 -26.90 16 9 Si 0.88 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 C 0.06 1.09 3.78 -3.83 -0.01 1.08 16 14 N -0.52 -8.97 4.04 -236.29 -0.96 -9.92 16 15 C 0.02 0.24 8.67 60.07 0.52 0.77 16 16 C 0.16 2.30 2.77 -68.86 -0.19 2.11 16 17 H 0.11 1.51 7.85 -51.93 -0.41 1.11 16 18 C -0.19 -2.18 8.44 37.16 0.31 -1.86 16 19 C 0.02 0.33 6.03 -35.62 -0.21 0.12 16 20 C -0.22 -3.06 10.80 -39.71 -0.43 -3.49 16 21 C -0.21 -2.74 10.91 -39.70 -0.43 -3.17 16 22 C -0.05 -0.68 12.09 29.42 0.36 -0.33 16 23 O -0.16 -2.53 7.85 5.68 0.04 -2.49 16 24 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 1.35 6.85 -51.93 -0.36 0.99 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.03 0.95 7.63 -51.93 -0.40 0.55 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.07 1.16 7.80 -51.93 -0.41 0.76 16 31 H 0.02 0.35 7.31 -51.93 -0.38 -0.03 16 32 H 0.07 1.25 6.44 -51.93 -0.33 0.92 16 33 H 0.08 1.23 5.29 -51.93 -0.27 0.96 16 34 H 0.02 0.32 6.09 -51.93 -0.32 0.00 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.74 7.07 -51.93 -0.37 0.38 16 37 H 0.06 0.77 6.28 -51.93 -0.33 0.45 16 38 H 0.14 1.75 8.06 -52.48 -0.42 1.33 16 39 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.20 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 316.40 15.07 4.77 4.77 Total: -1.00 -32.01 316.40 -7.27 -39.28 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -6.37 Total: -0.42 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -0.48 Total: -21.48 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.22 Total: -36.82 kcal Atomic # 8 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.01 -7.27 -39.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602440431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.775 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds