Wall clock time and date at job start Sun Mar 29 2020 23:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47164 * 2 1 4 4 C 1.50698 * 109.47344 * 239.99998 * 2 1 3 5 5 H 1.07993 * 119.99884 * 240.00199 * 4 2 1 6 6 C 1.37879 * 119.99736 * 60.00068 * 4 2 1 7 7 N 1.31507 * 120.00363 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99736 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47328 * 89.99763 * 8 6 4 10 10 H 1.48506 * 109.47169 * 209.99693 * 8 6 4 11 11 H 1.48504 * 109.47275 * 329.99651 * 8 6 4 12 12 N 1.46497 * 109.46987 * 119.99665 * 2 1 3 13 13 C 1.34779 * 120.00254 * 275.00102 * 12 2 1 14 14 O 1.21279 * 119.99814 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99771 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.47110 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47516 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47060 * 359.97438 * 17 16 15 19 19 C 1.53006 * 109.47127 * 300.00449 * 18 17 16 20 20 C 1.52997 * 109.47164 * 59.99836 * 19 18 17 21 21 C 1.52999 * 109.47317 * 59.99960 * 18 17 16 22 22 C 1.52998 * 109.47448 * 60.00173 * 15 13 12 23 23 H 1.08992 * 109.47133 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46942 * 300.00250 * 1 2 3 25 25 H 1.09001 * 109.46755 * 59.99761 * 1 2 3 26 26 H 0.96996 * 120.00638 * 180.02562 * 7 6 4 27 27 H 0.97000 * 120.00082 * 95.00530 * 12 2 1 28 28 H 1.09000 * 109.47026 * 59.99427 * 16 15 13 29 29 H 1.09004 * 109.46865 * 299.99777 * 16 15 13 30 30 H 1.09002 * 109.47398 * 119.99910 * 17 16 15 31 31 H 1.09001 * 109.47194 * 240.00091 * 17 16 15 32 32 H 1.08996 * 109.47853 * 180.02562 * 18 17 16 33 33 H 1.09001 * 109.47002 * 299.99574 * 19 18 17 34 34 H 1.09000 * 109.47050 * 179.97438 * 19 18 17 35 35 H 1.09001 * 109.46601 * 240.00089 * 20 19 18 36 36 H 1.08994 * 109.46976 * 120.00126 * 20 19 18 37 37 H 1.09002 * 109.46716 * 60.00091 * 21 18 17 38 38 H 1.09000 * 109.47486 * 180.02562 * 21 18 17 39 39 H 1.09002 * 109.47216 * 299.99942 * 22 15 13 40 40 H 1.09004 * 109.47344 * 59.99723 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.3429 -2.1616 -4.4118 10 1 2.4867 -0.1413 -5.1123 11 1 3.6295 -1.7582 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6499 -0.7284 3.5874 16 6 2.7006 0.2545 4.7589 17 6 3.2117 -0.4664 6.0079 18 6 3.5012 -1.9301 5.6693 19 6 2.2173 -2.6041 5.1808 20 6 1.7063 -1.8832 3.9318 21 6 4.5632 -1.9990 4.5702 22 6 4.0526 -1.2784 3.3214 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7082 1.1609 -3.4843 27 1 2.2491 -1.6317 1.1527 28 1 1.7011 0.6459 4.9482 29 1 3.3726 1.0770 4.5141 30 1 4.1261 0.0140 6.3561 31 1 2.4549 -0.4178 6.7908 32 1 3.8649 -2.4440 6.5591 33 1 1.4607 -2.5551 5.9638 34 1 2.4236 -3.6468 4.9392 35 1 0.7069 -1.4918 4.1217 36 1 1.6698 -2.5835 3.0975 37 1 5.4778 -1.5189 4.9182 38 1 4.7691 -3.0418 4.3286 39 1 4.0161 -1.9788 2.4870 40 1 4.7248 -0.4561 3.0763 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710069317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:31 Heat of formation + Delta-G solvation = -71.771089 kcal Electronic energy + Delta-G solvation = -19507.775749 eV Core-core repulsion = 16706.642033 eV Total energy + Delta-G solvation = -2801.133716 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81726 -38.00391 -34.75051 -32.53449 -31.48056 -30.85845 -30.70973 -28.54103 -25.23266 -23.12287 -22.63180 -22.49967 -20.79188 -19.34741 -17.64816 -16.42378 -15.93907 -15.74640 -15.69636 -15.04467 -14.57084 -13.83035 -13.58477 -12.95780 -12.57959 -12.37392 -12.08264 -12.05232 -11.99474 -11.96618 -11.84529 -11.82980 -11.53527 -11.06943 -10.91138 -10.67886 -10.38363 -10.34370 -10.27332 -10.21545 -9.76007 -9.74610 -9.01040 -8.75997 -8.51731 -7.83239 -6.10035 -4.19207 3.25156 3.31959 3.34182 3.47478 4.12868 4.39273 4.55047 4.63406 4.83257 5.20311 5.22015 5.28945 5.35851 5.36556 5.39117 5.44929 5.48321 5.49320 5.62737 5.66966 6.01828 6.02380 6.07266 6.23185 6.30859 6.33069 6.38343 6.40573 6.49174 6.52863 6.86240 7.00482 7.19213 7.52337 7.61134 7.73169 7.95537 8.18413 8.73855 8.82345 9.21353 9.48867 10.95931 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.035860 B = 0.005572 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.627058 B = 5024.238504 C = 5324.780056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.707 5.707 13 C 0.510 3.490 14 O -0.557 6.557 15 C -0.073 4.073 16 C -0.091 4.091 17 C -0.113 4.113 18 C -0.087 4.087 19 C -0.110 4.110 20 C -0.105 4.105 21 C -0.110 4.110 22 C -0.106 4.106 23 H 0.025 0.975 24 H 0.014 0.986 25 H 0.089 0.911 26 H 0.264 0.736 27 H 0.387 0.613 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.525 -7.396 14.674 17.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.354 5.354 13 C 0.294 3.706 14 O -0.436 6.436 15 C -0.076 4.076 16 C -0.129 4.129 17 C -0.150 4.150 18 C -0.106 4.106 19 C -0.147 4.147 20 C -0.143 4.143 21 C -0.148 4.148 22 C -0.144 4.144 23 H 0.044 0.956 24 H 0.033 0.967 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.219 0.781 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.222 -6.415 14.517 16.423 hybrid contribution 0.346 -0.893 -0.998 1.383 sum 4.567 -7.308 13.519 16.032 Atomic orbital electron populations 1.22067 0.98583 0.99011 1.00807 1.18717 0.90955 0.93962 0.80185 0.93513 1.21223 1.32335 1.13125 0.90384 0.92160 1.24888 0.94860 0.94942 0.99038 1.69901 1.35942 1.22476 1.23815 0.86460 0.79152 0.79277 0.82270 1.20567 1.21081 1.19880 1.46516 1.64965 1.13428 1.10527 1.20338 0.78327 0.87279 0.84616 1.90631 1.51498 1.16226 1.85210 1.20710 0.96268 0.96238 0.94403 1.21295 1.02206 0.96860 0.92587 1.21583 1.00773 0.95032 0.97632 1.21049 0.95573 0.96137 0.97828 1.21531 0.96894 0.98948 0.97374 1.21531 0.98408 0.96238 0.98133 1.21524 0.97793 1.00333 0.95102 1.21521 0.94717 1.00180 0.97947 0.95551 0.96729 0.89237 0.92615 0.78078 0.91476 0.91440 0.92104 0.92131 0.91414 0.92028 0.91911 0.91598 0.91415 0.92015 0.91917 0.91335 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 2 C 0.26 6.84 2.56 -69.08 -0.18 6.67 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.27 8.73 -34.44 -0.30 -14.58 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.20 11.32 55.43 0.63 -24.57 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.71 -15.04 4.85 -54.93 -0.27 -15.31 16 13 C 0.51 10.44 6.45 -10.99 -0.07 10.37 16 14 O -0.56 -13.73 15.64 5.56 0.09 -13.64 16 15 C -0.07 -1.10 0.61 -155.64 -0.10 -1.20 16 16 C -0.09 -1.32 4.28 -26.73 -0.11 -1.43 16 17 C -0.11 -1.24 5.71 -26.73 -0.15 -1.39 16 18 C -0.09 -0.88 3.20 -90.62 -0.29 -1.17 16 19 C -0.11 -1.14 5.71 -26.73 -0.15 -1.29 16 20 C -0.11 -1.38 4.89 -26.71 -0.13 -1.51 16 21 C -0.11 -1.16 5.71 -26.76 -0.15 -1.31 16 22 C -0.11 -1.41 4.88 -26.76 -0.13 -1.54 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.39 7.23 7.38 -40.82 -0.30 6.93 16 28 H 0.07 1.04 8.10 -51.93 -0.42 0.61 16 29 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.87 7.57 -51.93 -0.39 0.48 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.90 7.57 -51.93 -0.39 0.51 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 307.92 15.07 4.64 4.64 Total: -1.00 -30.22 307.92 -8.28 -38.50 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.83 Total: 4.66 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -1.52 Total: -10.06 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.36 Total: -39.88 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.09 Total: -13.64 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.22 -8.28 -38.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710069317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.273 kcal (2) G-P(sol) polarization free energy of solvation -30.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds