Wall clock time and date at job start Sun Mar 29 2020 22:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.32997 * 119.99730 * 2 1 4 4 C 1.47105 * 119.99945 * 180.13081 * 3 2 1 5 5 O 1.21616 * 120.00133 * 6.56504 * 4 3 2 6 6 N 1.34776 * 120.00289 * 186.55851 * 4 3 2 7 7 C 1.46500 * 120.00221 * 185.96017 * 6 4 3 8 8 C 1.50696 * 109.46886 * 269.72466 * 7 6 4 9 9 H 1.08005 * 120.00272 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99969 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99877 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00191 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47159 * 59.99449 * 12 10 8 14 14 H 1.48493 * 109.47044 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46582 * 299.99725 * 12 10 8 16 16 C 1.46503 * 119.99522 * 5.68361 * 6 4 3 17 17 C 1.52997 * 109.46985 * 116.33666 * 16 6 4 18 18 C 1.53004 * 109.47083 * 236.33564 * 16 6 4 19 19 C 1.50705 * 120.00477 * 180.02562 * 2 1 3 20 20 C 1.52994 * 117.49498 * 354.42423 * 19 2 1 21 21 C 1.52994 * 117.49559 * 285.76558 * 19 2 1 22 22 H 1.08990 * 109.47617 * 89.99746 * 1 2 3 23 23 H 1.09007 * 109.46607 * 209.99929 * 1 2 3 24 24 H 1.09002 * 109.47347 * 329.99428 * 1 2 3 25 25 H 1.07992 * 120.00248 * 0.13525 * 3 2 1 26 26 H 1.08991 * 109.46873 * 29.72635 * 7 6 4 27 27 H 1.08998 * 109.46952 * 149.72417 * 7 6 4 28 28 H 0.97007 * 120.00179 * 180.02562 * 11 10 8 29 29 H 1.08999 * 109.47674 * 356.33429 * 16 6 4 30 30 H 1.09004 * 109.47443 * 65.22512 * 17 16 6 31 31 H 1.09000 * 109.47158 * 185.22618 * 17 16 6 32 32 H 1.08997 * 109.47184 * 305.22364 * 17 16 6 33 33 H 1.08998 * 109.46950 * 54.44252 * 18 16 6 34 34 H 1.09001 * 109.46959 * 174.44386 * 18 16 6 35 35 H 1.09003 * 109.47214 * 294.44217 * 18 16 6 36 36 H 1.09001 * 115.54765 * 140.09282 * 19 2 1 37 37 H 1.09006 * 117.50201 * 359.97438 * 20 19 2 38 38 H 1.09000 * 117.50001 * 145.02016 * 20 19 2 39 39 H 1.09004 * 117.49426 * 214.97286 * 21 19 2 40 40 H 1.08993 * 117.50430 * 359.97438 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6429 1.1519 -0.0029 5 8 4.2508 0.1057 -0.1257 6 7 4.3171 2.3113 0.1304 7 6 5.7759 2.3299 -0.0030 8 6 6.4066 2.1068 1.3474 9 1 5.7831 1.9648 2.2178 10 6 7.7795 2.0838 1.4717 11 7 8.5387 2.2562 0.4117 12 14 8.5614 1.8065 3.1454 13 1 8.1306 0.4902 3.6810 14 1 10.0400 1.8255 3.0102 15 1 8.1349 2.8829 4.0753 16 6 3.5904 3.5539 0.4026 17 6 4.0037 4.0968 1.7721 18 6 3.9229 4.5861 -0.6767 19 6 2.2606 -1.3051 -0.0006 20 6 1.4441 -2.5923 0.1307 21 6 2.2945 -2.1017 1.3051 22 1 -0.3634 0.0000 -1.0275 23 1 -0.3633 -0.8901 0.5139 24 1 -0.3634 0.8899 0.5139 25 1 1.6319 2.0871 0.0022 26 1 6.0884 1.5394 -0.6851 27 1 6.0924 3.2958 -0.3967 28 1 9.5047 2.2397 0.4991 29 1 2.5185 3.3564 0.3985 30 1 5.0556 4.3814 1.7478 31 1 3.3969 4.9690 2.0154 32 1 3.8530 3.3269 2.5287 33 1 3.7204 4.1616 -1.6600 34 1 3.3088 5.4748 -0.5311 35 1 4.9764 4.8572 -0.6080 36 1 3.1489 -1.3346 -0.6315 37 1 0.3619 -2.4952 0.2179 38 1 1.7955 -3.4689 -0.4135 39 1 3.2051 -2.6559 1.5330 40 1 1.7721 -1.6818 2.1647 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726532391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:39 Heat of formation + Delta-G solvation = 5.610604 kcal Electronic energy + Delta-G solvation = -19133.839099 eV Core-core repulsion = 16336.060906 eV Total energy + Delta-G solvation = -2797.778194 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.37895 -37.54219 -35.71117 -33.21730 -32.64963 -30.73942 -28.48385 -26.80038 -26.62882 -23.60982 -22.31096 -22.05227 -21.21422 -19.04711 -17.45350 -16.80748 -16.37073 -15.52594 -14.82195 -14.49943 -14.09370 -13.81826 -13.44133 -13.29144 -12.94205 -12.61223 -12.40933 -12.21801 -12.17741 -11.66365 -11.48457 -11.35927 -11.13734 -11.02443 -10.88287 -10.77100 -10.50533 -10.41602 -10.35908 -10.10289 -9.79440 -9.46145 -8.64319 -8.45881 -8.35660 -7.50437 -5.97019 -3.99635 1.78146 3.35181 3.39572 3.43041 3.99274 4.11449 4.22789 4.50764 4.78974 5.00734 5.20571 5.25392 5.31316 5.36497 5.37841 5.57604 5.58724 5.65312 5.66744 5.76930 5.84895 5.93481 6.05137 6.10935 6.22333 6.32607 6.34465 6.43783 6.61253 6.64785 6.67441 6.89022 7.00646 7.25659 7.54165 7.69552 8.00663 8.33602 8.58765 9.00266 9.25637 9.64285 11.11040 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.019395 B = 0.007102 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.306028 B = 3941.565473 C = 4808.458654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.028 4.028 3 C -0.214 4.214 4 C 0.536 3.464 5 O -0.537 6.537 6 N -0.590 5.590 7 C 0.247 3.753 8 C -0.514 4.514 9 H 0.057 0.943 10 C 0.059 3.941 11 N -0.898 5.898 12 Si 0.894 3.106 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.278 1.278 16 C 0.132 3.868 17 C -0.155 4.155 18 C -0.161 4.161 19 C -0.117 4.117 20 C -0.196 4.196 21 C -0.159 4.159 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.123 0.877 26 H 0.039 0.961 27 H 0.034 0.966 28 H 0.262 0.738 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.147 0.853 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.739 -0.231 -0.699 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.029 4.029 3 C -0.235 4.235 4 C 0.325 3.675 5 O -0.417 6.417 6 N -0.321 5.321 7 C 0.128 3.872 8 C -0.553 4.553 9 H 0.075 0.925 10 C -0.142 4.142 11 N -0.537 5.537 12 Si 0.721 3.279 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.203 1.203 16 C 0.028 3.972 17 C -0.213 4.213 18 C -0.219 4.219 19 C -0.134 4.134 20 C -0.233 4.233 21 C -0.196 4.196 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.141 0.859 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.164 0.836 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.182 -0.735 -0.821 15.222 hybrid contribution 0.541 0.058 1.019 1.155 sum -14.641 -0.677 0.199 14.658 Atomic orbital electron populations 1.20952 0.91812 1.02694 1.02509 1.21694 0.94655 0.93593 0.93005 1.22720 0.94877 0.97869 1.08012 1.18357 0.87237 0.84006 0.77910 1.90643 1.70065 1.30340 1.50642 1.48244 1.09657 1.05751 1.68402 1.19205 0.72619 0.97899 0.97478 1.21413 0.91221 1.48600 0.94070 0.92475 1.24917 0.97169 0.95456 0.96663 1.69923 1.04779 1.50460 1.28586 0.86631 0.78016 0.78807 0.84397 1.20300 1.21300 1.20338 1.21046 0.95728 0.85359 0.95108 1.22135 1.03224 0.99745 0.96213 1.22162 1.02957 0.98242 0.98566 1.21695 1.01128 0.87990 1.02585 1.23117 0.97879 0.98708 1.03564 1.22781 1.01830 1.03222 0.91786 0.90723 0.91237 0.91482 0.85897 0.94313 0.94860 0.92841 0.90512 0.90498 0.93416 0.92699 0.92809 0.92469 0.91354 0.83564 0.89093 0.89029 0.88621 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.65 36.00 0.35 -0.94 16 2 C -0.03 -0.41 5.81 -101.17 -0.59 -0.99 16 3 C -0.21 -3.52 8.88 -37.80 -0.34 -3.86 16 4 C 0.54 11.54 7.56 -12.66 -0.10 11.45 16 5 O -0.54 -13.44 12.74 5.26 0.07 -13.38 16 6 N -0.59 -12.75 2.39 -168.86 -0.40 -13.15 16 7 C 0.25 6.48 4.69 -5.20 -0.02 6.46 16 8 C -0.51 -14.55 8.00 -34.44 -0.28 -14.83 16 9 H 0.06 1.63 7.53 -52.48 -0.40 1.23 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 11 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 12 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 C 0.13 2.24 3.16 -67.93 -0.21 2.03 16 17 C -0.16 -2.65 8.41 37.16 0.31 -2.34 16 18 C -0.16 -2.46 8.95 37.16 0.33 -2.13 16 19 C -0.12 -1.89 4.53 -91.78 -0.42 -2.30 16 20 C -0.20 -2.49 9.84 -26.70 -0.26 -2.75 16 21 C -0.16 -2.38 10.24 -26.70 -0.27 -2.65 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.66 6.09 -51.92 -0.32 0.34 16 24 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 25 H 0.12 1.67 5.91 -52.49 -0.31 1.36 16 26 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 27 H 0.03 0.88 6.35 -51.93 -0.33 0.55 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.08 1.10 5.21 -51.93 -0.27 0.83 16 30 H 0.08 1.52 7.30 -51.93 -0.38 1.14 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.18 6.81 -51.93 -0.35 0.82 16 36 H 0.15 2.86 5.86 -51.93 -0.30 2.56 16 37 H 0.09 0.97 6.16 -51.93 -0.32 0.65 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 40 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 320.62 15.07 4.83 4.83 Total: -1.00 -31.87 320.62 -7.68 -39.56 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.30 Total: 2.38 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -1.59 Total: -11.25 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.33 Total: -39.30 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.07 Total: -13.38 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.87 -7.68 -39.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726532391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.166 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds