Wall clock time and date at job start Sun Mar 29 2020 22:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.32997 * 119.99730 * 2 1 4 4 C 1.47105 * 119.99945 * 180.13081 * 3 2 1 5 5 O 1.21616 * 120.00133 * 6.56504 * 4 3 2 6 6 N 1.34776 * 120.00289 * 186.55851 * 4 3 2 7 7 C 1.46500 * 120.00221 * 185.96017 * 6 4 3 8 8 C 1.50696 * 109.46886 * 269.72466 * 7 6 4 9 9 H 1.08005 * 120.00272 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99969 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99877 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00191 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47159 * 59.99449 * 12 10 8 14 14 H 1.48493 * 109.47044 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46582 * 299.99725 * 12 10 8 16 16 C 1.46503 * 119.99522 * 5.68361 * 6 4 3 17 17 C 1.52997 * 109.46985 * 116.33666 * 16 6 4 18 18 C 1.53004 * 109.47083 * 236.33564 * 16 6 4 19 19 C 1.50705 * 120.00477 * 180.02562 * 2 1 3 20 20 C 1.52994 * 117.49498 * 354.42423 * 19 2 1 21 21 C 1.52994 * 117.49559 * 285.76558 * 19 2 1 22 22 H 1.08990 * 109.47617 * 89.99746 * 1 2 3 23 23 H 1.09007 * 109.46607 * 209.99929 * 1 2 3 24 24 H 1.09002 * 109.47347 * 329.99428 * 1 2 3 25 25 H 1.07992 * 120.00248 * 0.13525 * 3 2 1 26 26 H 1.08991 * 109.46873 * 29.72635 * 7 6 4 27 27 H 1.08998 * 109.46952 * 149.72417 * 7 6 4 28 28 H 0.97007 * 120.00179 * 180.02562 * 11 10 8 29 29 H 1.08999 * 109.47674 * 356.33429 * 16 6 4 30 30 H 1.09004 * 109.47443 * 65.22512 * 17 16 6 31 31 H 1.09000 * 109.47158 * 185.22618 * 17 16 6 32 32 H 1.08997 * 109.47184 * 305.22364 * 17 16 6 33 33 H 1.08998 * 109.46950 * 54.44252 * 18 16 6 34 34 H 1.09001 * 109.46959 * 174.44386 * 18 16 6 35 35 H 1.09003 * 109.47214 * 294.44217 * 18 16 6 36 36 H 1.09001 * 115.54765 * 140.09282 * 19 2 1 37 37 H 1.09006 * 117.50201 * 359.97438 * 20 19 2 38 38 H 1.09000 * 117.50001 * 145.02016 * 20 19 2 39 39 H 1.09004 * 117.49426 * 214.97286 * 21 19 2 40 40 H 1.08993 * 117.50430 * 359.97438 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6429 1.1519 -0.0029 5 8 4.2508 0.1057 -0.1257 6 7 4.3171 2.3113 0.1304 7 6 5.7759 2.3299 -0.0030 8 6 6.4066 2.1068 1.3474 9 1 5.7831 1.9648 2.2178 10 6 7.7795 2.0838 1.4717 11 7 8.5387 2.2562 0.4117 12 14 8.5614 1.8065 3.1454 13 1 8.1306 0.4902 3.6810 14 1 10.0400 1.8255 3.0102 15 1 8.1349 2.8829 4.0753 16 6 3.5904 3.5539 0.4026 17 6 4.0037 4.0968 1.7721 18 6 3.9229 4.5861 -0.6767 19 6 2.2606 -1.3051 -0.0006 20 6 1.4441 -2.5923 0.1307 21 6 2.2945 -2.1017 1.3051 22 1 -0.3634 0.0000 -1.0275 23 1 -0.3633 -0.8901 0.5139 24 1 -0.3634 0.8899 0.5139 25 1 1.6319 2.0871 0.0022 26 1 6.0884 1.5394 -0.6851 27 1 6.0924 3.2958 -0.3967 28 1 9.5047 2.2397 0.4991 29 1 2.5185 3.3564 0.3985 30 1 5.0556 4.3814 1.7478 31 1 3.3969 4.9690 2.0154 32 1 3.8530 3.3269 2.5287 33 1 3.7204 4.1616 -1.6600 34 1 3.3088 5.4748 -0.5311 35 1 4.9764 4.8572 -0.6080 36 1 3.1489 -1.3346 -0.6315 37 1 0.3619 -2.4952 0.2179 38 1 1.7955 -3.4689 -0.4135 39 1 3.2051 -2.6559 1.5330 40 1 1.7721 -1.6818 2.1647 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726532391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:39 Heat of formation + Delta-G solvation = -13.255578 kcal Electronic energy + Delta-G solvation = -19134.657198 eV Core-core repulsion = 16336.060906 eV Total energy + Delta-G solvation = -2798.596293 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.93683 -38.83012 -37.30223 -34.99808 -34.19876 -32.38496 -30.05678 -28.32558 -27.96711 -25.33725 -23.87300 -23.19745 -22.64467 -20.49552 -18.84853 -18.58682 -18.26563 -16.97051 -16.55443 -16.03154 -15.69326 -15.38976 -14.85909 -14.41157 -14.25253 -13.95017 -13.90974 -13.76847 -13.40560 -13.17673 -13.12311 -12.85125 -12.71376 -12.56877 -12.41215 -12.23037 -12.13144 -12.06496 -11.74403 -11.55045 -11.51214 -11.08315 -10.61190 -10.07800 -9.90141 -9.26907 -8.18824 -6.30973 0.51160 1.33182 1.37452 1.44569 2.31003 2.51339 2.56131 3.04112 3.09759 3.65054 3.81641 3.98906 4.08655 4.18448 4.29072 4.31774 4.35754 4.52398 4.68441 4.79254 4.83751 4.86268 4.86691 4.97594 5.00437 5.05207 5.12423 5.15202 5.23378 5.26957 5.37556 5.42201 5.50462 5.55906 5.66324 5.79384 5.97453 6.13624 6.75932 6.94528 7.33326 7.62732 8.87777 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.019395 B = 0.007102 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.306028 B = 3941.565473 C = 4808.458654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.003 4.003 3 C -0.237 4.237 4 C 0.520 3.480 5 O -0.590 6.590 6 N -0.597 5.597 7 C 0.267 3.733 8 C -0.523 4.523 9 H 0.050 0.950 10 C 0.005 3.995 11 N -0.932 5.932 12 Si 0.960 3.040 13 H -0.281 1.281 14 H -0.278 1.278 15 H -0.261 1.261 16 C 0.124 3.876 17 C -0.149 4.149 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.156 4.156 21 C -0.172 4.172 22 H 0.095 0.905 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.159 0.841 26 H -0.012 1.012 27 H 0.025 0.975 28 H 0.265 0.735 29 H 0.116 0.884 30 H 0.040 0.960 31 H 0.091 0.909 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.038 0.962 36 H 0.102 0.898 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.332 0.363 0.436 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.005 4.005 3 C -0.258 4.258 4 C 0.313 3.687 5 O -0.473 6.473 6 N -0.328 5.328 7 C 0.145 3.855 8 C -0.562 4.562 9 H 0.068 0.932 10 C -0.193 4.193 11 N -0.572 5.572 12 Si 0.784 3.216 13 H -0.207 1.207 14 H -0.203 1.203 15 H -0.185 1.185 16 C 0.022 3.978 17 C -0.207 4.207 18 C -0.213 4.213 19 C -0.171 4.171 20 C -0.193 4.193 21 C -0.209 4.209 22 H 0.114 0.886 23 H 0.104 0.896 24 H 0.107 0.893 25 H 0.177 0.823 26 H 0.006 0.994 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.134 0.866 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.057 0.943 36 H 0.119 0.881 37 H 0.144 0.856 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.810 -0.106 0.319 18.813 hybrid contribution 1.635 -0.213 0.613 1.759 sum -17.175 -0.318 0.931 17.203 Atomic orbital electron populations 1.21071 0.87528 1.04632 1.04311 1.22166 0.97266 0.91986 0.89064 1.22607 0.91204 1.00263 1.11697 1.19375 0.89714 0.83023 0.76604 1.90637 1.71744 1.32105 1.52845 1.48290 1.07887 1.07991 1.68603 1.18597 0.76138 0.95283 0.95478 1.21620 0.91655 1.48373 0.94506 0.93208 1.25799 0.97771 0.95115 1.00594 1.70047 1.05096 1.51303 1.30765 0.85588 0.77345 0.78746 0.79874 1.20666 1.20327 1.18514 1.21458 0.97201 0.83682 0.95487 1.22069 1.01827 1.00900 0.95891 1.22113 1.01862 0.99333 0.97950 1.21580 1.01512 0.90919 1.03103 1.23225 0.99139 0.96475 1.00413 1.22817 1.02224 1.03483 0.92390 0.88649 0.89609 0.89271 0.82333 0.99408 0.95722 0.92628 0.86633 0.94042 0.89000 0.94354 0.92876 0.88264 0.94331 0.88063 0.85644 0.88382 0.90550 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 9.65 71.23 0.69 -1.19 16 2 C 0.00 -0.08 5.81 -17.62 -0.10 -0.18 16 3 C -0.24 -7.47 8.88 23.43 0.21 -7.26 16 4 C 0.52 23.29 7.56 86.57 0.65 23.94 16 5 O -0.59 -31.80 12.74 -4.08 -0.05 -31.85 16 6 N -0.60 -26.79 2.39 -806.40 -1.93 -28.72 16 7 C 0.27 14.94 4.69 85.63 0.40 15.34 16 8 C -0.52 -31.06 8.00 25.60 0.20 -30.85 16 9 H 0.05 2.96 7.53 -2.91 -0.02 2.94 16 10 C 0.01 0.32 5.46 84.66 0.46 0.78 16 11 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 12 Si 0.96 46.61 29.54 68.60 2.03 48.63 16 13 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 15 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 16 C 0.12 4.08 3.16 44.99 0.14 4.22 16 17 C -0.15 -4.95 8.41 71.98 0.61 -4.34 16 18 C -0.15 -4.54 8.95 71.98 0.64 -3.89 16 19 C -0.15 -4.95 4.53 -11.54 -0.05 -5.00 16 20 C -0.16 -3.58 9.84 30.62 0.30 -3.28 16 21 C -0.17 -5.07 10.24 30.62 0.31 -4.76 16 22 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.09 1.12 6.09 -2.38 -0.01 1.10 16 24 H 0.09 1.10 8.07 -2.39 -0.02 1.08 16 25 H 0.16 3.69 5.91 -2.91 -0.02 3.67 16 26 H -0.01 -0.80 7.50 -2.39 -0.02 -0.81 16 27 H 0.02 1.41 6.35 -2.39 -0.02 1.39 16 28 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 29 H 0.12 2.91 5.21 -2.39 -0.01 2.90 16 30 H 0.04 1.65 7.30 -2.39 -0.02 1.64 16 31 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.04 1.37 8.08 -2.39 -0.02 1.35 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.04 1.35 6.81 -2.39 -0.02 1.33 16 36 H 0.10 4.26 5.86 -2.39 -0.01 4.25 16 37 H 0.13 2.05 6.16 -2.38 -0.01 2.03 16 38 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -76.69 320.62 5.82 -70.87 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 1.01 Total: 15.37 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 4.47 Total: -16.47 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -1.64 Total: -86.55 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.05 Total: -31.85 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -76.69 5.82 -70.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726532391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.615 kcal (2) G-P(sol) polarization free energy of solvation -76.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds