Wall clock time and date at job start Sun Mar 29 2020 23:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.47104 * 120.00350 * 2 1 4 4 O 1.21613 * 120.00217 * 148.72367 * 3 2 1 5 5 N 1.34782 * 119.99584 * 328.71941 * 3 2 1 6 6 C 1.46500 * 119.99553 * 177.53123 * 5 3 2 7 7 C 1.46494 * 120.00185 * 357.53441 * 5 3 2 8 8 H 1.09001 * 109.46922 * 352.56542 * 7 5 3 9 9 C 1.52996 * 109.47312 * 112.56952 * 7 5 3 10 10 C 1.50707 * 109.46897 * 232.57351 * 7 5 3 11 11 H 1.08001 * 119.99739 * 359.97438 * 10 7 5 12 12 C 1.37880 * 120.00025 * 180.02562 * 10 7 5 13 13 N 1.31519 * 119.99977 * 359.97438 * 12 10 7 14 14 Si 1.86792 * 119.99996 * 179.97438 * 12 10 7 15 15 H 1.48505 * 109.47427 * 89.99560 * 14 12 10 16 16 H 1.48499 * 109.47222 * 210.00039 * 14 12 10 17 17 H 1.48508 * 109.47326 * 329.99590 * 14 12 10 18 18 C 1.32995 * 119.99614 * 179.97438 * 2 1 3 19 19 C 1.51446 * 126.33994 * 179.68756 * 18 2 1 20 20 C 1.54274 * 106.85234 * 180.24619 * 19 18 2 21 21 C 1.54987 * 103.66084 * 23.48143 * 20 19 18 22 22 C 1.51839 * 126.34303 * 0.02562 * 18 2 1 23 23 H 1.08999 * 109.47215 * 99.35064 * 1 2 3 24 24 H 1.09000 * 109.47323 * 219.35345 * 1 2 3 25 25 H 1.09006 * 109.46490 * 339.35620 * 1 2 3 26 26 H 1.09003 * 109.46752 * 265.09654 * 6 5 3 27 27 H 1.08998 * 109.46969 * 145.10000 * 6 5 3 28 28 H 1.09001 * 109.47093 * 25.09692 * 6 5 3 29 29 H 1.09001 * 109.46613 * 60.00267 * 9 7 5 30 30 H 1.09004 * 109.46999 * 179.97438 * 9 7 5 31 31 H 1.09001 * 109.47238 * 299.99755 * 9 7 5 32 32 H 0.96991 * 119.99907 * 179.97438 * 13 12 10 33 33 H 1.09003 * 109.98832 * 299.72969 * 19 18 2 34 34 H 1.08998 * 109.98776 * 61.03290 * 19 18 2 35 35 H 1.08998 * 110.79596 * 264.85710 * 20 19 18 36 36 H 1.09003 * 110.43130 * 141.93097 * 20 19 18 37 37 H 1.09004 * 110.83361 * 204.49143 * 21 20 19 38 38 H 1.08996 * 110.83193 * 80.91423 * 21 20 19 39 39 H 1.09000 * 110.44429 * 274.92450 * 22 18 2 40 40 H 1.09005 * 110.44125 * 37.32340 * 22 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2739 0.0000 4 8 3.3262 1.3504 0.5468 5 7 1.7156 2.3563 -0.6061 6 6 2.4227 3.6385 -0.5597 7 6 0.4359 2.2506 -1.3111 8 1 0.1289 1.2055 -1.3521 9 6 -0.6248 3.0650 -0.5678 10 6 0.5887 2.7844 -2.7122 11 1 1.5435 3.1648 -3.0440 12 6 -0.4908 2.7882 -3.5701 13 7 -1.6536 2.3254 -3.1658 14 14 -0.3015 3.4505 -5.3063 15 1 0.1013 2.3477 -6.2157 16 1 -1.5946 4.0208 -5.7622 17 1 0.7393 4.5097 -5.3215 18 6 2.1719 -1.1518 0.0005 19 6 3.6771 -1.3192 -0.0061 20 6 3.9584 -2.8360 -0.0089 21 6 2.6645 -3.4472 -0.6042 22 6 1.5625 -2.5426 0.0006 23 1 -0.3633 -0.1670 -1.0140 24 1 -0.3634 -0.7946 0.6516 25 1 -0.3632 0.9618 0.3623 26 1 2.0385 4.2355 0.2674 27 1 2.2672 4.1733 -1.4967 28 1 3.4884 3.4608 -0.4152 29 1 -0.3177 4.1101 -0.5270 30 1 -1.5769 2.9867 -1.0927 31 1 -0.7353 2.6788 0.4455 32 1 -2.4130 2.3284 -3.7692 33 1 4.0993 -0.8583 -0.8991 34 1 4.1064 -0.8644 0.8867 35 1 4.1231 -3.2010 1.0049 36 1 4.8158 -3.0628 -0.6427 37 1 2.5391 -4.4804 -0.2803 38 1 2.6682 -3.3786 -1.6920 39 1 1.3290 -2.8559 1.0181 40 1 0.6660 -2.5654 -0.6190 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753610580.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:31 Heat of formation + Delta-G solvation = -35.827582 kcal Electronic energy + Delta-G solvation = -19459.843807 eV Core-core repulsion = 16660.268719 eV Total energy + Delta-G solvation = -2799.575088 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.14990 -38.83056 -37.42074 -34.55261 -34.39211 -31.11239 -29.82932 -28.84739 -27.74789 -27.23666 -24.92154 -23.06420 -21.62631 -20.80165 -18.81117 -18.42853 -17.33115 -17.03891 -16.55596 -16.25984 -15.97700 -15.21088 -14.99917 -14.44514 -14.33421 -14.22221 -13.79275 -13.49773 -13.37374 -13.10484 -13.06709 -12.77384 -12.72879 -12.65008 -12.32651 -12.13244 -12.03245 -11.93709 -11.87741 -11.77944 -11.45957 -11.01881 -10.61051 -10.33571 -9.71058 -9.25599 -8.13255 -6.24940 0.57620 1.41381 1.44238 1.52213 2.16620 2.41098 2.54112 3.15413 3.50221 3.79719 3.93763 4.17102 4.22916 4.37883 4.50249 4.51973 4.64806 4.71156 4.74345 4.80722 4.84955 4.92468 4.94332 4.97792 5.03749 5.08569 5.13851 5.16176 5.21741 5.24276 5.43285 5.44509 5.54418 5.60154 5.75253 5.85312 6.01202 6.24767 6.69225 6.88158 7.33005 7.47114 8.90542 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.022268 B = 0.006861 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.092446 B = 4079.871870 C = 4458.508040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.193 4.193 3 C 0.539 3.461 4 O -0.599 6.599 5 N -0.594 5.594 6 C 0.091 3.909 7 C 0.227 3.773 8 H 0.086 0.914 9 C -0.140 4.140 10 C -0.545 4.545 11 H 0.049 0.951 12 C 0.029 3.971 13 N -0.905 5.905 14 Si 0.951 3.049 15 H -0.279 1.279 16 H -0.279 1.279 17 H -0.275 1.275 18 C -0.059 4.059 19 C -0.096 4.096 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.093 4.093 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.026 0.974 30 H 0.077 0.923 31 H 0.031 0.969 32 H 0.266 0.734 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.596 -9.322 4.863 11.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.195 4.195 3 C 0.331 3.669 4 O -0.484 6.484 5 N -0.323 5.323 6 C -0.052 4.052 7 C 0.127 3.873 8 H 0.103 0.897 9 C -0.198 4.198 10 C -0.583 4.583 11 H 0.067 0.933 12 C -0.171 4.171 13 N -0.544 5.544 14 Si 0.777 3.223 15 H -0.205 1.205 16 H -0.205 1.205 17 H -0.200 1.200 18 C -0.061 4.061 19 C -0.134 4.134 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.130 4.130 23 H 0.087 0.913 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.120 0.880 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.932 -9.252 5.051 11.251 hybrid contribution 0.011 1.132 -1.101 1.579 sum 3.943 -8.121 3.950 9.854 Atomic orbital electron populations 1.20977 0.89628 1.03206 1.01859 1.20844 0.97049 0.91510 1.10127 1.18906 0.84873 0.85066 0.78094 1.90618 1.23005 1.85990 1.48746 1.48241 1.23703 1.09151 1.51195 1.21465 0.96540 0.85414 1.01811 1.19748 0.78435 0.99974 0.89185 0.89741 1.22011 1.02130 0.98339 0.97330 1.21560 0.96335 1.42581 0.97849 0.93323 1.25442 0.94836 0.95341 1.01529 1.69925 1.01158 1.46427 1.36854 0.85670 0.77495 0.78547 0.80586 1.20485 1.20462 1.20001 1.22918 0.96541 0.94591 0.92015 1.21245 0.92373 0.98295 1.01440 1.22402 0.98557 0.92262 1.02200 1.22526 0.93313 0.99512 1.00150 1.21594 0.98972 0.89500 1.02884 0.91259 0.89943 0.91777 0.92839 0.91115 0.92020 0.95437 0.90454 0.95064 0.92457 0.93116 0.91296 0.89913 0.90489 0.88356 0.91699 0.87981 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.57 7.39 71.24 0.53 -3.05 16 2 C -0.19 -7.44 5.51 -18.70 -0.10 -7.55 16 3 C 0.54 24.29 7.24 86.57 0.63 24.91 16 4 O -0.60 -28.64 14.42 -4.07 -0.06 -28.70 16 5 N -0.59 -27.10 2.76 -831.07 -2.29 -29.39 16 6 C 0.09 3.75 9.82 127.77 1.25 5.01 16 7 C 0.23 10.86 1.75 44.25 0.08 10.93 16 8 H 0.09 4.11 3.12 -2.41 -0.01 4.11 16 9 C -0.14 -6.37 8.50 71.98 0.61 -5.75 16 10 C -0.54 -28.57 8.01 25.60 0.21 -28.37 16 11 H 0.05 2.61 6.73 -2.91 -0.02 2.59 16 12 C 0.03 1.51 5.30 84.65 0.45 1.96 16 13 N -0.91 -47.49 11.32 21.45 0.24 -47.25 16 14 Si 0.95 41.72 29.54 68.60 2.03 43.74 16 15 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 18 C -0.06 -1.93 6.09 -17.01 -0.10 -2.04 16 19 C -0.10 -3.03 5.16 30.52 0.16 -2.87 16 20 C -0.12 -2.52 6.88 31.71 0.22 -2.31 16 21 C -0.12 -2.31 6.94 31.91 0.22 -2.09 16 22 C -0.09 -2.18 5.79 30.85 0.18 -2.00 16 23 H 0.07 2.67 6.79 -2.39 -0.02 2.66 16 24 H 0.08 2.34 7.67 -2.39 -0.02 2.32 16 25 H 0.06 2.44 4.48 -2.38 -0.01 2.43 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.07 2.96 6.44 -2.39 -0.02 2.94 16 28 H 0.06 2.50 7.25 -2.39 -0.02 2.49 16 29 H 0.03 1.22 7.86 -2.39 -0.02 1.20 16 30 H 0.08 3.81 6.07 -2.38 -0.01 3.79 16 31 H 0.03 1.28 6.59 -2.39 -0.02 1.27 16 32 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 2.39 7.34 -2.39 -0.02 2.37 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.08 1.87 7.80 -2.38 -0.02 1.85 16 Total: -1.00 -59.99 307.18 5.26 -54.73 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 1.02 Total: 20.06 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 4.32 Total: -13.20 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -2.05 Total: -76.63 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.06 Total: -28.70 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -59.99 5.26 -54.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753610580.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.899 kcal (2) G-P(sol) polarization free energy of solvation -59.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds