Wall clock time and date at job start Sun Mar 29 2020 23:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.47102 * 119.99907 * 2 1 4 4 O 1.21610 * 120.00081 * 83.84394 * 3 2 1 5 5 N 1.34774 * 119.99651 * 263.84234 * 3 2 1 6 6 C 1.46495 * 120.00408 * 5.25855 * 5 3 2 7 7 C 1.46500 * 119.99781 * 185.25873 * 5 3 2 8 8 H 1.09009 * 109.46996 * 0.02562 * 7 5 3 9 9 C 1.52999 * 109.47198 * 240.00241 * 7 5 3 10 10 C 1.50703 * 109.47355 * 119.99546 * 7 5 3 11 11 H 1.08003 * 119.99586 * 5.63647 * 10 7 5 12 12 C 1.37878 * 120.00035 * 185.63141 * 10 7 5 13 13 N 1.31513 * 119.99911 * 185.01685 * 12 10 7 14 14 Si 1.86799 * 120.00034 * 5.29826 * 12 10 7 15 15 H 1.48504 * 109.46886 * 269.72139 * 14 12 10 16 16 H 1.48495 * 109.47388 * 29.72027 * 14 12 10 17 17 H 1.48504 * 109.47063 * 149.72284 * 14 12 10 18 18 C 1.32996 * 119.99643 * 180.02562 * 2 1 3 19 19 C 1.51447 * 126.33608 * 179.69102 * 18 2 1 20 20 C 1.54277 * 106.85010 * 180.24149 * 19 18 2 21 21 C 1.54984 * 103.66049 * 23.48117 * 20 19 18 22 22 C 1.51836 * 126.34228 * 359.97438 * 18 2 1 23 23 H 1.09000 * 109.46754 * 95.07925 * 1 2 3 24 24 H 1.09003 * 109.46791 * 215.08051 * 1 2 3 25 25 H 1.09000 * 109.47114 * 335.08249 * 1 2 3 26 26 H 1.09001 * 109.47015 * 275.16363 * 6 5 3 27 27 H 1.08994 * 109.47371 * 35.16224 * 6 5 3 28 28 H 1.09002 * 109.47322 * 155.16646 * 6 5 3 29 29 H 1.08997 * 109.47312 * 54.83714 * 9 7 5 30 30 H 1.09004 * 109.47199 * 174.83869 * 9 7 5 31 31 H 1.08998 * 109.46668 * 294.83388 * 9 7 5 32 32 H 0.97002 * 119.99584 * 355.27618 * 13 12 10 33 33 H 1.09004 * 109.98245 * 299.72285 * 19 18 2 34 34 H 1.08996 * 109.98869 * 61.02682 * 19 18 2 35 35 H 1.08997 * 110.79212 * 264.85690 * 20 19 18 36 36 H 1.09004 * 110.43170 * 141.93158 * 20 19 18 37 37 H 1.09004 * 110.83337 * 204.49217 * 21 20 19 38 38 H 1.09003 * 110.83425 * 80.91075 * 21 20 19 39 39 H 1.08997 * 110.44697 * 274.92590 * 22 18 2 40 40 H 1.08997 * 110.44586 * 37.32752 * 22 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2426 1.2740 0.0000 4 8 2.4488 1.8570 1.0471 5 7 2.6879 1.7949 -1.1605 6 6 2.3415 1.1545 -2.4317 7 6 3.5184 3.0017 -1.1507 8 1 3.6691 3.3308 -0.1224 9 6 2.8198 4.1081 -1.9436 10 6 4.8533 2.6980 -1.7809 11 1 5.0299 1.7333 -2.2332 12 6 5.8489 3.6518 -1.7802 13 7 6.9778 3.4243 -2.4153 14 14 5.5974 5.2639 -0.8706 15 1 4.9931 6.2617 -1.7897 16 1 4.6920 5.0438 0.2856 17 1 6.9072 5.7678 -0.3849 18 6 2.1720 -1.1518 -0.0005 19 6 3.6772 -1.3191 -0.0072 20 6 3.9586 -2.8359 -0.0113 21 6 2.6647 -3.4466 -0.6071 22 6 1.5626 -2.5425 -0.0006 23 1 -0.3633 -0.0910 -1.0236 24 1 -0.3633 -0.8410 0.5907 25 1 -0.3633 0.9320 0.4330 26 1 3.0490 0.3515 -2.6386 27 1 1.3339 0.7436 -2.3689 28 1 2.3840 1.8917 -3.2334 29 1 1.8178 4.2641 -1.5441 30 1 3.3923 5.0319 -1.8601 31 1 2.7518 3.8163 -2.9917 32 1 7.1376 2.5602 -2.8260 33 1 4.0993 -0.8574 -0.8998 34 1 4.1065 -0.8651 0.8859 35 1 4.1232 -3.2017 1.0022 36 1 4.8160 -3.0622 -0.6452 37 1 2.5394 -4.4801 -0.2841 38 1 2.6684 -3.3770 -1.6949 39 1 1.3299 -2.8563 1.0170 40 1 0.6657 -2.5652 -0.6195 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753610584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:33 Heat of formation + Delta-G solvation = -60.105124 kcal Electronic energy + Delta-G solvation = -19417.694818 eV Core-core repulsion = 16617.066977 eV Total energy + Delta-G solvation = -2800.627841 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.13053 -38.96676 -37.28880 -35.05298 -34.25846 -31.96013 -29.93376 -28.52755 -27.81481 -26.85150 -25.46960 -22.96560 -21.61713 -20.74584 -19.63811 -18.81413 -17.75014 -17.16088 -16.67975 -16.36408 -15.73820 -15.37204 -14.73382 -14.72702 -14.39860 -14.27915 -14.13760 -13.78946 -13.52260 -13.40343 -13.21755 -13.17666 -12.98458 -12.70685 -12.44591 -12.17233 -12.08113 -11.91462 -11.90503 -11.70517 -11.53242 -11.04766 -10.74856 -10.69549 -9.66745 -9.59018 -8.75121 -6.47686 0.80446 1.34776 1.47873 1.63493 1.64265 2.30611 2.37093 3.01204 3.38817 3.72204 3.80936 4.05587 4.15240 4.29451 4.36650 4.42683 4.43568 4.52290 4.61605 4.66569 4.68584 4.78553 4.80550 4.82095 4.87966 4.91294 4.99501 5.03436 5.07612 5.12822 5.17447 5.31473 5.37902 5.45720 5.63225 5.73544 5.76809 5.95948 6.48449 6.63802 7.19434 7.33474 8.58221 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.025666 B = 0.006975 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.679833 B = 4013.619560 C = 4521.732488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.175 4.175 3 C 0.544 3.456 4 O -0.606 6.606 5 N -0.588 5.588 6 C 0.095 3.905 7 C 0.225 3.775 8 H 0.029 0.971 9 C -0.150 4.150 10 C -0.594 4.594 11 H 0.031 0.969 12 C -0.015 4.015 13 N -0.937 5.937 14 Si 1.081 2.919 15 H -0.248 1.248 16 H -0.272 1.272 17 H -0.287 1.287 18 C -0.082 4.082 19 C -0.109 4.109 20 C -0.118 4.118 21 C -0.114 4.114 22 C -0.082 4.082 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.254 0.746 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.835 -12.616 0.936 19.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.177 4.177 3 C 0.334 3.666 4 O -0.489 6.489 5 N -0.317 5.317 6 C -0.048 4.048 7 C 0.121 3.879 8 H 0.047 0.953 9 C -0.208 4.208 10 C -0.633 4.633 11 H 0.049 0.951 12 C -0.213 4.213 13 N -0.573 5.573 14 Si 0.904 3.096 15 H -0.172 1.172 16 H -0.198 1.198 17 H -0.214 1.214 18 C -0.083 4.083 19 C -0.147 4.147 20 C -0.156 4.156 21 C -0.151 4.151 22 C -0.118 4.118 23 H 0.112 0.888 24 H 0.112 0.888 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.017 -10.850 1.725 17.809 hybrid contribution 0.415 -1.162 -0.404 1.299 sum -13.602 -12.012 1.320 18.195 Atomic orbital electron populations 1.20635 0.86884 1.03280 1.03845 1.20845 0.98168 0.89999 1.08735 1.19247 0.78541 0.85853 0.83002 1.90692 1.61173 1.63781 1.33267 1.48027 1.49173 1.27771 1.06763 1.21656 1.00418 0.97627 0.85071 1.19152 0.89017 0.83302 0.96403 0.95287 1.22242 0.99225 0.98172 1.01144 1.22383 0.98897 1.01675 1.40336 0.95107 1.26921 0.92334 1.06501 0.95573 1.70938 1.27083 1.24688 1.34602 0.83540 0.76162 0.73124 0.76740 1.17247 1.19776 1.21397 1.22679 0.95010 0.95194 0.95426 1.21300 0.94053 0.99175 1.00140 1.22352 0.99357 0.91838 1.02010 1.22517 0.92596 0.99552 1.00441 1.21513 0.98975 0.88472 1.02853 0.88832 0.88802 0.92902 0.94356 0.88891 0.90695 0.92696 0.93046 0.91708 0.93706 0.93287 0.94043 0.90449 0.91378 0.88446 0.90963 0.88670 0.88253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.97 9.36 71.24 0.67 -1.31 16 2 C -0.17 -5.52 4.05 -18.70 -0.08 -5.60 16 3 C 0.54 23.69 6.41 86.57 0.55 24.24 16 4 O -0.61 -32.06 16.45 -4.06 -0.07 -32.12 16 5 N -0.59 -25.65 2.75 -831.08 -2.29 -27.94 16 6 C 0.09 3.24 9.25 127.77 1.18 4.42 16 7 C 0.22 11.35 2.20 44.25 0.10 11.45 16 8 H 0.03 1.66 5.39 -2.38 -0.01 1.65 16 9 C -0.15 -6.39 8.67 71.98 0.62 -5.77 16 10 C -0.59 -34.30 8.77 25.60 0.22 -34.07 16 11 H 0.03 1.91 7.78 -2.91 -0.02 1.89 16 12 C -0.01 -0.86 5.43 84.66 0.46 -0.40 16 13 N -0.94 -59.06 13.70 21.45 0.29 -58.76 16 14 Si 1.08 52.78 25.30 68.60 1.74 54.52 16 15 H -0.25 -10.71 6.83 99.48 0.68 -10.03 16 16 H -0.27 -13.12 6.34 99.48 0.63 -12.48 16 17 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 18 C -0.08 -2.32 6.12 -17.01 -0.10 -2.42 16 19 C -0.11 -3.57 5.90 30.52 0.18 -3.39 16 20 C -0.12 -2.71 6.88 31.71 0.22 -2.49 16 21 C -0.11 -1.90 6.95 31.93 0.22 -1.68 16 22 C -0.08 -1.44 5.72 30.87 0.18 -1.27 16 23 H 0.09 1.57 7.88 -2.39 -0.02 1.55 16 24 H 0.09 1.57 7.47 -2.39 -0.02 1.55 16 25 H 0.05 1.30 8.08 -2.39 -0.02 1.28 16 26 H 0.04 1.36 8.01 -2.39 -0.02 1.34 16 27 H 0.09 2.42 6.86 -2.39 -0.02 2.41 16 28 H 0.07 2.53 6.54 -2.39 -0.02 2.51 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.05 2.19 4.45 -2.38 -0.01 2.18 16 31 H 0.06 2.59 6.87 -2.39 -0.02 2.57 16 32 H 0.25 16.14 8.72 -92.71 -0.81 15.33 16 33 H 0.05 1.88 8.01 -2.39 -0.02 1.86 16 34 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.10 1.32 7.76 -2.39 -0.02 1.30 16 Total: -1.00 -75.42 314.98 4.97 -70.46 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.87 Total: 12.14 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 4.43 Total: -18.28 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -1.99 Total: -86.71 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.07 Total: -32.12 kcal Atomic # 14 Polarization: 52.78 SS G_CDS: 1.74 Total: 54.52 kcal Total: -75.42 4.97 -70.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753610584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.352 kcal (2) G-P(sol) polarization free energy of solvation -75.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds