Wall clock time and date at job start Sun Mar 29 2020 22:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53007 * 109.47319 * 2 1 4 4 H 1.08999 * 109.47124 * 55.00464 * 3 2 1 5 5 C 1.50700 * 109.46991 * 174.99978 * 3 2 1 6 6 H 1.08005 * 119.99536 * 120.00101 * 5 3 2 7 7 C 1.37878 * 120.00261 * 299.72607 * 5 3 2 8 8 N 1.31510 * 119.99658 * 0.27557 * 7 5 3 9 9 Si 1.86797 * 119.99973 * 180.27708 * 7 5 3 10 10 H 1.48498 * 109.47260 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47332 * 120.00101 * 9 7 5 12 12 H 1.48498 * 109.47011 * 239.99669 * 9 7 5 13 13 N 1.46494 * 109.47054 * 295.00204 * 3 2 1 14 14 C 1.34780 * 120.00053 * 84.99759 * 13 3 2 15 15 O 1.21614 * 119.99893 * 0.02562 * 14 13 3 16 16 C 1.47106 * 119.99921 * 179.97438 * 14 13 3 17 17 C 1.32989 * 119.99717 * 186.99220 * 16 14 13 18 18 C 1.51270 * 120.85425 * 12.16245 * 17 16 14 19 19 C 1.53661 * 108.30816 * 128.62174 * 18 17 16 20 20 C 1.52963 * 109.32502 * 54.86527 * 19 18 17 21 21 C 1.52957 * 109.81517 * 296.27405 * 20 19 18 22 22 C 1.51266 * 120.84772 * 192.45452 * 17 16 14 23 23 H 1.09007 * 109.47438 * 59.99560 * 1 2 3 24 24 H 1.09001 * 109.47337 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47268 * 299.99974 * 1 2 3 26 26 H 1.09002 * 109.47268 * 240.00026 * 2 1 3 27 27 H 1.08998 * 109.47241 * 119.99869 * 2 1 3 28 28 H 0.97006 * 119.99682 * 180.02562 * 8 7 5 29 29 H 0.97000 * 120.00287 * 264.99807 * 13 3 2 30 30 H 1.07998 * 119.99834 * 6.98558 * 16 14 13 31 31 H 1.08990 * 109.63180 * 248.39777 * 18 17 16 32 32 H 1.09000 * 109.62199 * 8.96881 * 18 17 16 33 33 H 1.08999 * 109.63015 * 294.84672 * 19 18 17 34 34 H 1.09002 * 109.41651 * 174.75449 * 19 18 17 35 35 H 1.08997 * 109.40938 * 176.16332 * 20 19 18 36 36 H 1.08996 * 109.40895 * 56.37421 * 20 19 18 37 37 H 1.09005 * 109.48125 * 303.61335 * 21 20 19 38 38 H 1.08998 * 109.47978 * 183.57873 * 21 20 19 39 39 H 1.09002 * 109.62935 * 351.03066 * 22 17 16 40 40 H 1.08999 * 109.63470 * 111.60698 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1430 0.8834 1.2307 8 7 3.4060 0.3420 2.1757 9 14 6.0044 0.8924 1.3877 10 1 6.5982 1.5570 0.1999 11 1 6.3940 1.6326 2.6148 12 1 6.5006 -0.5045 1.4738 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3414 2.6326 -0.4314 16 6 0.0461 3.3226 -2.6237 17 6 -1.0954 4.0013 -2.6932 18 6 -1.8725 4.3427 -1.4410 19 6 -2.1750 5.8492 -1.4563 20 6 -2.8911 6.2085 -2.7594 21 6 -1.9668 5.9439 -3.9490 22 6 -1.6534 4.4460 -4.0270 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 3.8289 -0.0523 2.9546 29 1 2.2718 2.1232 -1.9977 30 1 0.6877 3.2547 -3.4898 31 1 -2.8053 3.7792 -1.4239 32 1 -1.2768 4.0966 -0.5620 33 1 -1.2432 6.4105 -1.3869 34 1 -2.8141 6.0991 -0.6095 35 1 -3.1669 7.2628 -2.7422 36 1 -3.7908 5.6011 -2.8576 37 1 -1.0399 6.5030 -3.8206 38 1 -2.4583 6.2609 -4.8688 39 1 -0.9170 4.2664 -4.8102 40 1 -2.5664 3.8920 -4.2451 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762719046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:37 Heat of formation + Delta-G solvation = -46.005862 kcal Electronic energy + Delta-G solvation = -18853.228681 eV Core-core repulsion = 16053.212230 eV Total energy + Delta-G solvation = -2800.016451 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.41387 -37.76663 -35.04690 -32.50573 -32.26652 -30.85219 -30.80043 -27.43919 -26.10189 -23.09107 -22.83399 -21.54495 -20.23957 -19.31062 -18.38963 -16.78779 -15.82523 -15.33552 -15.05025 -14.54095 -14.31702 -14.16568 -13.77832 -13.33063 -13.00190 -12.67014 -12.51010 -12.22852 -11.91607 -11.76937 -11.45536 -11.22345 -11.03357 -10.94205 -10.83987 -10.82829 -10.51909 -10.22113 -10.18409 -10.12593 -9.56478 -9.01452 -8.79763 -8.49068 -8.43897 -7.67934 -6.09924 -4.18870 1.79537 3.24920 3.32878 3.35646 4.04992 4.20923 4.42548 4.75729 4.85755 4.91929 5.17368 5.21657 5.25452 5.44281 5.46354 5.63085 5.66884 5.76313 5.86986 5.97282 6.03460 6.10754 6.13569 6.40160 6.43492 6.50002 6.53186 6.70100 6.80165 7.01471 7.10613 7.25814 7.42442 7.56777 7.66758 7.79978 7.95418 8.22328 8.76295 8.83142 9.24800 9.49297 10.95478 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.035102 B = 0.004772 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.495214 B = 5865.798843 C = 6105.059855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.704 5.704 14 C 0.533 3.467 15 O -0.547 6.547 16 C -0.219 4.219 17 C -0.042 4.042 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.090 4.090 23 H 0.040 0.960 24 H 0.021 0.979 25 H 0.049 0.951 26 H 0.030 0.970 27 H 0.098 0.902 28 H 0.263 0.737 29 H 0.388 0.612 30 H 0.118 0.882 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.778 7.980 -10.994 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.067 0.933 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.350 5.350 14 C 0.321 3.679 15 O -0.429 6.429 16 C -0.240 4.240 17 C -0.044 4.044 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.127 4.127 23 H 0.059 0.941 24 H 0.040 0.960 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.220 0.780 30 H 0.136 0.864 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.263 7.837 -10.122 15.801 hybrid contribution 1.380 -0.087 -0.417 1.444 sum -7.883 7.750 -10.540 15.274 Atomic orbital electron populations 1.21836 0.98321 0.97921 1.01314 1.21925 0.92656 0.99854 1.02147 1.18773 0.94122 0.89186 0.81187 0.93311 1.21291 0.90845 1.38907 1.06086 0.92102 1.24884 0.98541 0.94856 0.95412 1.69910 1.34986 1.37857 1.09241 0.86417 0.84988 0.77744 0.78092 1.19771 1.20908 1.20896 1.46445 1.14460 1.55748 1.18361 1.18417 0.82548 0.79517 0.87423 1.90560 1.51256 1.60108 1.41009 1.22571 0.98784 1.03993 0.98665 1.22539 0.93760 0.92067 0.96008 1.21659 1.00936 0.94397 0.98532 1.21679 1.00214 0.96650 0.96909 1.21556 0.98545 1.00743 0.95105 1.21561 0.99963 0.95617 0.98225 1.20913 1.01094 0.96358 0.94362 0.94135 0.96020 0.93165 0.95142 0.88406 0.92672 0.78013 0.86403 0.91245 0.85544 0.92146 0.91881 0.92350 0.92062 0.91822 0.91989 0.91176 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.15 0.32 -2.78 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.83 2.24 -69.08 -0.15 6.67 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 6 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 7 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 8 N -0.88 -24.85 11.30 55.43 0.63 -24.22 16 9 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.70 -14.86 5.02 -56.12 -0.28 -15.14 16 14 C 0.53 10.69 6.18 -12.66 -0.08 10.61 16 15 O -0.55 -12.38 10.35 5.27 0.05 -12.32 16 16 C -0.22 -3.44 9.65 -37.81 -0.37 -3.81 16 17 C -0.04 -0.59 5.38 -100.61 -0.54 -1.13 16 18 C -0.12 -1.77 5.32 -27.26 -0.15 -1.92 16 19 C -0.12 -1.42 5.95 -26.41 -0.16 -1.57 16 20 C -0.12 -1.21 5.81 -26.77 -0.16 -1.37 16 21 C -0.12 -1.11 5.94 -26.64 -0.16 -1.27 16 22 C -0.09 -0.96 6.04 -27.49 -0.17 -1.13 16 23 H 0.04 0.90 5.65 -51.92 -0.29 0.60 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 1.20 7.84 -51.93 -0.41 0.80 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.10 2.66 5.96 -51.93 -0.31 2.35 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.39 7.22 8.52 -40.82 -0.35 6.87 16 30 H 0.12 1.55 7.96 -52.49 -0.42 1.13 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.13 2.34 4.79 -52.88 -0.25 2.09 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.67 7.92 -51.93 -0.41 0.26 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 311.71 15.07 4.70 4.70 Total: -1.00 -28.94 311.71 -8.67 -37.61 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.60 Total: 7.44 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -2.15 Total: -13.76 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.34 Total: -39.36 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.05 Total: -12.32 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.94 -8.67 -37.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762719046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.392 kcal (2) G-P(sol) polarization free energy of solvation -28.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds