Wall clock time and date at job start Sun Mar 29 2020 22:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53007 * 109.47319 * 2 1 4 4 H 1.08999 * 109.47124 * 55.00464 * 3 2 1 5 5 C 1.50700 * 109.46991 * 174.99978 * 3 2 1 6 6 H 1.08005 * 119.99536 * 120.00101 * 5 3 2 7 7 C 1.37878 * 120.00261 * 299.72607 * 5 3 2 8 8 N 1.31510 * 119.99658 * 0.27557 * 7 5 3 9 9 Si 1.86797 * 119.99973 * 180.27708 * 7 5 3 10 10 H 1.48498 * 109.47260 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47332 * 120.00101 * 9 7 5 12 12 H 1.48498 * 109.47011 * 239.99669 * 9 7 5 13 13 N 1.46494 * 109.47054 * 295.00204 * 3 2 1 14 14 C 1.34780 * 120.00053 * 84.99759 * 13 3 2 15 15 O 1.21614 * 119.99893 * 0.02562 * 14 13 3 16 16 C 1.47106 * 119.99921 * 179.97438 * 14 13 3 17 17 C 1.32989 * 119.99717 * 186.99220 * 16 14 13 18 18 C 1.51270 * 120.85425 * 12.16245 * 17 16 14 19 19 C 1.53661 * 108.30816 * 128.62174 * 18 17 16 20 20 C 1.52963 * 109.32502 * 54.86527 * 19 18 17 21 21 C 1.52957 * 109.81517 * 296.27405 * 20 19 18 22 22 C 1.51266 * 120.84772 * 192.45452 * 17 16 14 23 23 H 1.09007 * 109.47438 * 59.99560 * 1 2 3 24 24 H 1.09001 * 109.47337 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47268 * 299.99974 * 1 2 3 26 26 H 1.09002 * 109.47268 * 240.00026 * 2 1 3 27 27 H 1.08998 * 109.47241 * 119.99869 * 2 1 3 28 28 H 0.97006 * 119.99682 * 180.02562 * 8 7 5 29 29 H 0.97000 * 120.00287 * 264.99807 * 13 3 2 30 30 H 1.07998 * 119.99834 * 6.98558 * 16 14 13 31 31 H 1.08990 * 109.63180 * 248.39777 * 18 17 16 32 32 H 1.09000 * 109.62199 * 8.96881 * 18 17 16 33 33 H 1.08999 * 109.63015 * 294.84672 * 19 18 17 34 34 H 1.09002 * 109.41651 * 174.75449 * 19 18 17 35 35 H 1.08997 * 109.40938 * 176.16332 * 20 19 18 36 36 H 1.08996 * 109.40895 * 56.37421 * 20 19 18 37 37 H 1.09005 * 109.48125 * 303.61335 * 21 20 19 38 38 H 1.08998 * 109.47978 * 183.57873 * 21 20 19 39 39 H 1.09002 * 109.62935 * 351.03066 * 22 17 16 40 40 H 1.08999 * 109.63470 * 111.60698 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1430 0.8834 1.2307 8 7 3.4060 0.3420 2.1757 9 14 6.0044 0.8924 1.3877 10 1 6.5982 1.5570 0.1999 11 1 6.3940 1.6326 2.6148 12 1 6.5006 -0.5045 1.4738 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3414 2.6326 -0.4314 16 6 0.0461 3.3226 -2.6237 17 6 -1.0954 4.0013 -2.6932 18 6 -1.8725 4.3427 -1.4410 19 6 -2.1750 5.8492 -1.4563 20 6 -2.8911 6.2085 -2.7594 21 6 -1.9668 5.9439 -3.9490 22 6 -1.6534 4.4460 -4.0270 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 3.8289 -0.0523 2.9546 29 1 2.2718 2.1232 -1.9977 30 1 0.6877 3.2547 -3.4898 31 1 -2.8053 3.7792 -1.4239 32 1 -1.2768 4.0966 -0.5620 33 1 -1.2432 6.4105 -1.3869 34 1 -2.8141 6.0991 -0.6095 35 1 -3.1669 7.2628 -2.7422 36 1 -3.7908 5.6011 -2.8576 37 1 -1.0399 6.5030 -3.8206 38 1 -2.4583 6.2609 -4.8688 39 1 -0.9170 4.2664 -4.8102 40 1 -2.5664 3.8920 -4.2451 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762719046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:37 Heat of formation + Delta-G solvation = -62.716259 kcal Electronic energy + Delta-G solvation = -18853.953298 eV Core-core repulsion = 16053.212230 eV Total energy + Delta-G solvation = -2800.741069 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.90875 -38.94649 -36.87316 -34.28219 -33.63033 -32.60758 -31.81103 -29.22252 -27.48747 -25.00662 -23.81385 -22.91396 -21.58691 -21.07853 -19.71703 -18.47201 -17.45510 -17.07378 -16.41849 -16.20642 -15.62810 -15.25271 -15.12919 -14.59900 -14.39355 -14.30496 -13.83451 -13.51607 -13.42877 -13.25611 -13.14041 -12.83071 -12.72041 -12.66109 -12.15487 -12.04200 -11.95527 -11.72648 -11.60747 -11.47474 -11.13778 -11.03148 -10.54928 -10.22175 -9.78880 -9.44771 -8.16057 -6.33296 0.54379 1.43382 1.44438 1.56429 2.37534 2.54811 2.79805 3.13470 3.83154 3.86977 4.09455 4.13347 4.27637 4.42595 4.49563 4.52216 4.54908 4.58018 4.69069 4.77177 4.84268 5.03831 5.05692 5.10244 5.17774 5.20785 5.22411 5.27146 5.40461 5.45446 5.48291 5.56209 5.62416 5.67229 5.81618 5.89690 5.99820 6.19347 6.75863 7.09801 7.34736 7.69070 8.89566 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.035102 B = 0.004772 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.495214 B = 5865.798843 C = 6105.059855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.003 1.003 5 C -0.548 4.548 6 H 0.069 0.931 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.262 1.262 11 H -0.284 1.284 12 H -0.278 1.278 13 N -0.705 5.705 14 C 0.525 3.475 15 O -0.580 6.580 16 C -0.240 4.240 17 C -0.023 4.023 18 C -0.125 4.125 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.114 4.114 22 C -0.088 4.088 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.025 0.975 26 H 0.039 0.961 27 H 0.071 0.929 28 H 0.265 0.735 29 H 0.401 0.599 30 H 0.149 0.851 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.878 8.960 -13.699 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.015 0.985 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.185 1.185 11 H -0.210 1.210 12 H -0.204 1.204 13 N -0.353 5.353 14 C 0.316 3.684 15 O -0.465 6.465 16 C -0.261 4.261 17 C -0.025 4.025 18 C -0.161 4.161 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.151 4.151 22 C -0.124 4.124 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.235 0.765 30 H 0.166 0.834 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.365 8.831 -12.865 18.199 hybrid contribution 1.294 -0.333 0.476 1.418 sum -8.071 8.498 -12.388 17.054 Atomic orbital electron populations 1.21659 0.96929 0.98988 1.00282 1.21774 0.93809 0.99232 1.01097 1.18336 0.93539 0.89134 0.81531 0.98512 1.21626 0.91562 1.38930 1.06529 0.91264 1.25772 1.03337 0.94366 0.94999 1.70061 1.36989 1.38546 1.09772 0.85323 0.79122 0.77859 0.78178 1.18540 1.20967 1.20352 1.46231 1.15501 1.56172 1.17379 1.19188 0.81600 0.78959 0.88633 1.90576 1.52061 1.61132 1.42720 1.22483 1.00497 1.05759 0.97314 1.22941 0.92411 0.89663 0.97486 1.21563 1.00339 0.96631 0.97592 1.21653 1.00349 0.94213 0.98950 1.21554 0.98518 1.01950 0.93636 1.21584 0.99976 0.94488 0.99103 1.21024 1.01942 0.97329 0.92147 0.93755 0.93741 0.95535 0.94264 0.91106 0.92625 0.76464 0.83360 0.91199 0.89633 0.92918 0.91579 0.90625 0.91406 0.92144 0.89320 0.89318 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.51 71.98 0.61 -5.02 16 2 C -0.12 -6.09 5.45 30.59 0.17 -5.93 16 3 C 0.28 14.66 2.24 44.25 0.10 14.76 16 4 H 0.00 -0.19 7.58 -2.39 -0.02 -0.21 16 5 C -0.55 -29.68 8.73 25.60 0.22 -29.45 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.83 5.30 84.66 0.45 1.28 16 8 N -0.92 -53.13 11.30 21.45 0.24 -52.89 16 9 Si 0.97 42.67 29.54 68.60 2.03 44.70 16 10 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 13 N -0.71 -30.36 5.02 -449.70 -2.26 -32.61 16 14 C 0.53 21.56 6.18 86.57 0.54 22.09 16 15 O -0.58 -27.64 10.35 -4.07 -0.04 -27.68 16 16 C -0.24 -7.27 9.65 23.43 0.23 -7.05 16 17 C -0.02 -0.61 5.38 -17.26 -0.09 -0.71 16 18 C -0.12 -3.71 5.32 30.25 0.16 -3.55 16 19 C -0.11 -2.65 5.95 30.80 0.18 -2.47 16 20 C -0.12 -2.00 5.81 30.57 0.18 -1.82 16 21 C -0.11 -1.73 5.94 30.66 0.18 -1.55 16 22 C -0.09 -1.54 6.04 30.10 0.18 -1.36 16 23 H 0.04 2.00 5.65 -2.38 -0.01 1.98 16 24 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 26 H 0.04 1.87 8.14 -2.39 -0.02 1.86 16 27 H 0.07 4.00 5.96 -2.39 -0.01 3.98 16 28 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 29 H 0.40 14.84 8.52 -92.71 -0.79 14.05 16 30 H 0.15 3.52 7.96 -2.91 -0.02 3.50 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.09 3.34 4.79 -17.47 -0.08 3.26 16 33 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 1.30 7.92 -2.39 -0.02 1.28 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -65.42 311.71 3.23 -62.19 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.15 Total: 27.07 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 3.10 Total: -20.77 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -2.01 Total: -85.50 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.04 Total: -27.68 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -65.42 3.23 -62.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762719046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.527 kcal (2) G-P(sol) polarization free energy of solvation -65.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds