Wall clock time and date at job start Sun Mar 29 2020 23:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47133 * 300.34645 * 3 2 1 5 5 O 1.42898 * 109.52186 * 300.12170 * 4 3 2 6 6 C 1.53124 * 109.52556 * 179.97438 * 4 3 2 7 7 C 1.53028 * 109.27966 * 182.37610 * 6 4 3 8 8 N 1.46848 * 109.52663 * 59.18110 * 7 6 4 9 9 C 1.46900 * 110.99914 * 174.15941 * 8 7 6 10 10 H 1.09002 * 109.46800 * 178.42667 * 9 8 7 11 11 C 1.52994 * 109.47496 * 58.42798 * 9 8 7 12 12 C 1.52998 * 109.47154 * 298.42206 * 9 8 7 13 13 C 1.50695 * 109.47577 * 295.55212 * 12 9 8 14 14 H 1.08001 * 119.99951 * 4.86911 * 13 12 9 15 15 C 1.37876 * 120.00288 * 184.87040 * 13 12 9 16 16 N 1.31511 * 120.00106 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00177 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46879 * 89.99922 * 17 15 13 19 19 H 1.48497 * 109.47009 * 209.99784 * 17 15 13 20 20 H 1.48493 * 109.46710 * 329.99886 * 17 15 13 21 21 C 1.46849 * 111.19343 * 298.25618 * 8 7 6 22 22 C 1.53030 * 109.52256 * 61.74059 * 21 8 7 23 23 H 4.44644 * 5.63349 * 180.02562 * 4 1 2 24 24 H 1.08999 * 109.47453 * 180.34260 * 3 2 1 25 25 H 1.09011 * 109.46937 * 60.34584 * 3 2 1 26 26 H 0.96700 * 113.99638 * 59.88365 * 5 4 3 27 27 H 1.08999 * 109.50349 * 62.43132 * 6 4 3 28 28 H 1.09005 * 109.53404 * 302.33964 * 6 4 3 29 29 H 1.09000 * 109.46484 * 299.15906 * 7 6 4 30 30 H 1.09005 * 109.45420 * 179.18910 * 7 6 4 31 31 H 1.08992 * 109.47367 * 179.97438 * 11 9 8 32 32 H 1.09005 * 109.47236 * 59.99590 * 11 9 8 33 33 H 1.09002 * 109.46988 * 299.99753 * 11 9 8 34 34 H 1.09004 * 109.46914 * 55.55560 * 12 9 8 35 35 H 1.09003 * 109.47250 * 175.54809 * 12 9 8 36 36 H 0.96999 * 120.00124 * 179.97438 * 16 15 13 37 37 H 1.09003 * 109.45891 * 181.75511 * 21 8 7 38 38 H 1.08996 * 109.46134 * 301.72234 * 21 8 7 39 39 H 1.09002 * 109.50218 * 180.87237 * 22 21 8 40 40 H 1.09004 * 109.50647 * 60.76549 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.7279 1.2448 5 8 2.6779 -0.0640 2.4163 6 6 4.6875 -0.7285 1.2457 7 6 5.1917 -1.5093 2.4614 8 7 4.6840 -2.8861 2.4055 9 6 5.2594 -3.7035 3.4820 10 1 4.8453 -4.7107 3.4343 11 6 4.9202 -3.0763 4.8356 12 6 6.7790 -3.7685 3.3163 13 6 7.1144 -4.4845 2.0334 14 1 6.3248 -4.7865 1.3613 15 6 8.4292 -4.7541 1.7178 16 7 9.3907 -4.3859 2.5360 17 14 8.8450 -5.6410 0.1272 18 1 9.0485 -4.6456 -0.9559 19 1 10.0877 -6.4325 0.3121 20 1 7.7291 -6.5498 -0.2390 21 6 3.2164 -2.9130 2.4513 22 6 2.6532 -2.1740 1.2353 23 1 -1.0499 -0.0003 0.0001 24 1 3.0089 1.0284 0.0061 25 1 3.0095 -0.5077 -0.8932 26 1 1.7138 -0.0269 2.4813 27 1 5.0518 0.2976 1.2956 28 1 5.0523 -1.2002 0.3333 29 1 4.8386 -1.0287 3.3738 30 1 6.2817 -1.5238 2.4570 31 1 5.3468 -3.6830 5.6343 32 1 3.8376 -3.0300 4.9536 33 1 5.3343 -2.0691 4.8833 34 1 7.1846 -2.7572 3.2848 35 1 7.2135 -4.3080 4.1579 36 1 10.3156 -4.5759 2.3141 37 1 2.8717 -3.9470 2.4397 38 1 2.8726 -2.4259 3.3637 39 1 1.5641 -2.1808 1.2777 40 1 2.9854 -2.6689 0.3227 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880480877.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:47 Heat of formation + Delta-G solvation = -24.999465 kcal Electronic energy + Delta-G solvation = -19324.144518 eV Core-core repulsion = 16525.038972 eV Total energy + Delta-G solvation = -2799.105546 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.94814 -38.40758 -35.17404 -34.59029 -33.76894 -32.00233 -31.12788 -29.24734 -28.28432 -25.23861 -24.44988 -23.43735 -21.29926 -20.10838 -18.92594 -18.31098 -17.35342 -17.07998 -16.51533 -16.14538 -15.77247 -15.44289 -15.13097 -14.66229 -14.45991 -14.13059 -14.05415 -13.63993 -13.21588 -13.18058 -13.02934 -12.81934 -12.55574 -12.47611 -12.34983 -12.07994 -12.02342 -11.76444 -11.55208 -11.25420 -11.06141 -11.02792 -10.82551 -10.51175 -10.44103 -8.85668 -8.07448 -6.12427 1.43868 1.44585 1.55676 1.87863 1.96100 2.49524 3.11749 3.27206 3.36399 3.47440 3.82629 3.87869 4.03871 4.21172 4.39816 4.40935 4.47696 4.54825 4.64079 4.69108 4.73907 4.79161 4.86895 4.96694 4.99860 5.05701 5.17374 5.19506 5.21052 5.25443 5.28799 5.43091 5.54755 5.73908 5.92808 6.35904 6.49999 6.57992 6.71663 6.82413 7.01963 7.53640 9.04759 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.026317 B = 0.005882 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.677484 B = 4758.908314 C = 5284.129551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.215 4.215 3 C -0.036 4.036 4 C 0.148 3.852 5 O -0.565 6.565 6 C -0.099 4.099 7 C 0.065 3.935 8 N -0.526 5.526 9 C 0.094 3.906 10 H 0.063 0.937 11 C -0.171 4.171 12 C 0.035 3.965 13 C -0.498 4.498 14 H 0.060 0.940 15 C -0.005 4.005 16 N -0.941 5.941 17 Si 0.957 3.043 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.266 1.266 21 C 0.058 3.942 22 C -0.130 4.130 23 H 0.245 0.755 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.380 0.620 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.031 0.969 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.046 0.954 34 H -0.004 1.004 35 H -0.008 1.008 36 H 0.258 0.742 37 H 0.067 0.933 38 H 0.035 0.965 39 H 0.081 0.919 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.619 8.428 -3.705 19.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.215 4.215 3 C -0.073 4.073 4 C 0.108 3.892 5 O -0.372 6.372 6 C -0.137 4.137 7 C -0.063 4.063 8 N -0.250 5.250 9 C -0.014 4.014 10 H 0.082 0.918 11 C -0.230 4.230 12 C -0.002 4.002 13 C -0.536 4.536 14 H 0.078 0.922 15 C -0.201 4.201 16 N -0.584 5.584 17 Si 0.783 3.217 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.191 1.191 21 C -0.070 4.070 22 C -0.168 4.168 23 H 0.261 0.739 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.229 0.771 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.014 0.986 35 H 0.010 0.990 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.053 0.947 39 H 0.099 0.901 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.653 8.273 -4.031 19.027 hybrid contribution -0.116 -0.261 0.134 0.316 sum -16.769 8.012 -3.897 18.989 Atomic orbital electron populations 1.25642 0.96660 1.00071 0.99052 1.23203 0.94804 1.01434 1.02092 1.19425 0.85599 1.02859 0.99374 1.21071 0.93628 0.90463 0.84086 1.86535 1.27161 1.79733 1.43744 1.21577 0.92693 1.00400 0.99017 1.21863 0.99070 0.88216 0.97144 1.62001 1.06118 1.10700 1.46203 1.21605 0.96112 0.95740 0.87974 0.91839 1.22358 1.01134 1.00900 0.98640 1.19080 0.90506 0.95168 0.95447 1.21488 0.91810 1.34936 1.05406 0.92187 1.25860 0.96701 0.97361 1.00140 1.70100 0.99900 1.49724 1.38641 0.85561 0.77401 0.78652 0.80067 1.20206 1.21372 1.19068 1.22019 0.87669 0.99893 0.97418 1.22186 1.00362 0.95298 0.98952 0.73860 0.88371 0.87986 0.77107 0.90296 0.89968 0.95099 0.92918 0.92589 0.91861 0.93492 0.98602 0.99006 0.93314 0.91423 0.94696 0.90063 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.04 19.25 74.32 1.43 -1.61 16 2 C -0.22 -4.09 11.12 31.12 0.35 -3.75 16 3 C -0.04 -0.71 5.01 28.79 0.14 -0.57 16 4 C 0.15 3.59 0.73 -10.72 -0.01 3.58 16 5 O -0.56 -14.01 11.81 -148.98 -1.76 -15.77 16 6 C -0.10 -2.93 5.11 30.65 0.16 -2.77 16 7 C 0.06 2.40 4.49 86.32 0.39 2.79 16 8 N -0.53 -20.04 4.32 -871.15 -3.77 -23.81 16 9 C 0.09 3.96 2.30 44.91 0.10 4.07 16 10 H 0.06 2.71 8.07 -2.39 -0.02 2.69 16 11 C -0.17 -6.16 8.50 71.98 0.61 -5.55 16 12 C 0.04 1.86 4.27 29.85 0.13 1.99 16 13 C -0.50 -28.42 8.83 25.60 0.23 -28.20 16 14 H 0.06 3.38 7.73 -2.91 -0.02 3.36 16 15 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 16 N -0.94 -58.18 13.29 21.45 0.28 -57.90 16 17 Si 0.96 45.51 29.54 68.60 2.03 47.53 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 21 C 0.06 1.76 4.91 86.32 0.42 2.18 16 22 C -0.13 -3.27 4.78 30.64 0.15 -3.12 16 23 H 0.25 1.90 7.80 -4.42 -0.03 1.86 16 24 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.38 7.23 8.09 -74.06 -0.60 6.63 16 27 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.08 2.48 8.14 -2.38 -0.02 2.47 16 29 H 0.03 1.14 6.23 -2.39 -0.01 1.13 16 30 H 0.05 2.32 5.97 -2.38 -0.01 2.30 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.06 1.97 6.67 -2.38 -0.02 1.96 16 33 H 0.05 1.72 6.51 -2.39 -0.02 1.71 16 34 H 0.00 -0.24 6.10 -2.38 -0.01 -0.25 16 35 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 37 H 0.07 2.02 8.07 -2.39 -0.02 2.00 16 38 H 0.03 1.05 6.36 -2.39 -0.02 1.03 16 39 H 0.08 1.73 7.34 -2.39 -0.02 1.71 16 40 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -66.61 315.27 1.76 -64.86 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.41 Total: 15.84 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 4.56 Total: -30.76 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -3.48 Total: -81.71 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -1.76 Total: -15.77 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -66.61 1.76 -64.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880480877.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.857 kcal (2) G-P(sol) polarization free energy of solvation -66.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds