Wall clock time and date at job start Sun Mar 29 2020 23:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.50701 * 109.46990 * 239.99612 * 2 1 3 5 5 H 1.07998 * 120.00129 * 239.99760 * 4 2 1 6 6 C 1.37880 * 119.99861 * 60.00478 * 4 2 1 7 7 N 1.31510 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47204 * 90.00103 * 8 6 4 10 10 H 1.48497 * 109.46999 * 209.99591 * 8 6 4 11 11 H 1.48495 * 109.47119 * 329.99709 * 8 6 4 12 12 C 1.50703 * 109.46946 * 119.99872 * 2 1 3 13 13 O 1.21278 * 119.99985 * 120.00236 * 12 2 1 14 14 N 1.34779 * 119.99944 * 299.99948 * 12 2 1 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.46840 * 180.02562 * 15 14 12 17 17 C 1.51851 * 108.64878 * 296.97580 * 16 15 14 18 18 C 1.53120 * 110.72344 * 172.26278 * 17 16 15 19 19 C 1.51374 * 108.47392 * 85.92435 * 18 17 16 20 20 C 1.29525 * 120.36311 * 288.06762 * 19 18 17 21 21 C 1.51370 * 120.35569 * 0.02562 * 20 19 18 22 22 C 1.51852 * 108.64951 * 173.01973 * 16 15 14 23 23 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47108 * 300.00256 * 1 2 3 25 25 H 1.09004 * 109.47368 * 60.00155 * 1 2 3 26 26 H 0.97002 * 119.99768 * 180.02562 * 7 6 4 27 27 H 0.97000 * 119.99708 * 359.97438 * 14 12 2 28 28 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 29 29 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 30 30 H 1.08991 * 108.60570 * 54.99956 * 16 15 14 31 31 H 1.08999 * 109.22498 * 292.73038 * 17 16 15 32 32 H 1.08998 * 109.22033 * 52.07748 * 17 16 15 33 33 H 1.09002 * 109.69360 * 326.22466 * 18 17 16 34 34 H 1.08997 * 109.81792 * 205.70101 * 18 17 16 35 35 H 1.08002 * 119.81820 * 108.08985 * 19 18 17 36 36 H 1.08001 * 119.82273 * 180.02562 * 20 19 18 37 37 H 1.08997 * 109.61804 * 312.15921 * 21 20 19 38 38 H 1.09008 * 109.61143 * 191.64078 * 21 20 19 39 39 H 1.09001 * 109.21628 * 307.92157 * 22 16 15 40 40 H 1.09001 * 109.22243 * 67.26597 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1405 -5.1120 11 1 3.6307 -1.7567 -3.7118 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7066 -0.2499 2.4546 15 6 2.1954 -0.9401 3.6508 16 6 1.6847 -0.2193 4.9000 17 6 2.2611 1.1855 4.9197 18 6 1.6326 2.0133 6.0441 19 6 2.4079 1.7576 7.3188 20 6 2.3036 0.6214 7.9319 21 6 1.4055 -0.4654 7.3810 22 6 2.0538 -1.0431 6.1210 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7082 1.1607 -3.4844 27 1 1.1493 0.5390 2.5435 28 1 3.2854 -0.9398 3.6507 29 1 1.8324 -1.9679 3.6509 30 1 0.5986 -0.1497 4.8417 31 1 3.3389 1.1291 5.0719 32 1 2.0592 1.6696 3.9642 33 1 0.5931 1.7159 6.1822 34 1 1.6797 3.0730 5.7935 35 1 3.0513 2.5270 7.7196 36 1 2.8604 0.4485 8.8410 37 1 0.4319 -0.0439 7.1310 38 1 1.2858 -1.2532 8.1249 39 1 1.7115 -2.0682 5.9791 40 1 3.1371 -1.0407 6.2415 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886013752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:32 Heat of formation + Delta-G solvation = -50.068041 kcal Electronic energy + Delta-G solvation = -18569.580424 eV Core-core repulsion = 15769.387823 eV Total energy + Delta-G solvation = -2800.192601 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.45450 -38.28340 -34.82796 -33.67734 -32.21514 -31.81262 -30.29239 -26.98309 -25.09389 -24.13787 -23.57145 -21.89174 -20.27994 -19.21935 -18.14114 -16.54059 -16.28578 -15.85627 -15.19665 -14.94833 -14.47355 -14.34566 -13.60303 -13.40890 -13.30478 -13.07219 -12.68445 -12.54129 -12.07001 -11.73063 -11.66149 -11.40359 -10.99756 -10.87886 -10.71027 -10.64346 -10.61252 -10.57393 -10.42379 -10.21315 -9.92102 -9.15475 -8.93294 -8.55656 -8.34682 -8.27513 -5.99717 -4.02456 2.15311 3.36131 3.41608 3.48904 3.81421 3.99659 4.48886 4.51290 4.67873 4.74047 4.95557 5.02695 5.04589 5.31667 5.33573 5.41512 5.48266 5.58525 5.63804 5.76994 5.84527 5.88860 6.00309 6.07840 6.12823 6.15114 6.33830 6.43289 6.52384 6.65713 6.76900 6.86807 6.97294 7.17650 7.52043 7.79632 8.03537 8.20339 8.51711 9.06835 9.32085 9.63094 11.07960 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.047644 B = 0.004102 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.555134 B = 6823.530083 C = 7077.818069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.051 0.949 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.518 3.482 13 O -0.548 6.548 14 N -0.746 5.746 15 C 0.122 3.878 16 C -0.096 4.096 17 C -0.110 4.110 18 C -0.093 4.093 19 C -0.156 4.156 20 C -0.161 4.161 21 C -0.090 4.090 22 C -0.106 4.106 23 H 0.030 0.970 24 H 0.011 0.989 25 H 0.092 0.908 26 H 0.260 0.740 27 H 0.394 0.606 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.893 2.493 19.321 19.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.307 3.693 13 O -0.424 6.424 14 N -0.401 5.401 15 C -0.003 4.003 16 C -0.115 4.115 17 C -0.148 4.148 18 C -0.130 4.130 19 C -0.174 4.174 20 C -0.179 4.179 21 C -0.128 4.128 22 C -0.144 4.144 23 H 0.049 0.951 24 H 0.030 0.970 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.229 0.771 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.443 1.863 19.072 19.168 hybrid contribution 0.093 0.022 -0.659 0.665 sum -0.350 1.885 18.413 18.513 Atomic orbital electron populations 1.21734 0.96606 0.99756 1.00845 1.18871 0.94106 0.96816 0.89513 0.93083 1.21162 1.30836 1.12735 0.89052 0.90823 1.24950 0.95177 0.95070 0.99094 1.69873 1.37249 1.23147 1.23455 0.86458 0.79465 0.79238 0.82092 1.20701 1.21320 1.19756 1.21950 0.78473 0.84279 0.84568 1.90523 1.38068 1.26989 1.86864 1.46328 1.55457 1.32641 1.05692 1.21295 0.98991 0.95958 0.84007 1.21039 1.00928 0.95136 0.94375 1.21371 1.00669 0.94434 0.98290 1.20862 0.98993 1.00125 0.93021 1.22580 1.00182 0.97618 0.96980 1.22537 1.00241 0.95471 0.99672 1.20804 0.98183 0.96862 0.96910 1.21249 1.01266 0.98832 0.93056 0.95060 0.96973 0.88903 0.93023 0.77127 0.92334 0.92319 0.90943 0.91637 0.91158 0.91040 0.91471 0.87798 0.87826 0.91019 0.91606 0.91426 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.16 0.33 -2.72 16 2 C 0.03 0.71 2.64 -92.92 -0.25 0.46 16 3 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.50 -14.42 8.37 -34.44 -0.29 -14.71 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.44 11.32 55.43 0.63 -24.82 16 8 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.52 12.04 7.15 -10.98 -0.08 11.97 16 13 O -0.55 -14.70 15.46 5.56 0.09 -14.61 16 14 N -0.75 -13.08 5.05 -60.29 -0.30 -13.39 16 15 C 0.12 1.82 5.00 -4.04 -0.02 1.80 16 16 C -0.10 -1.05 1.77 -91.79 -0.16 -1.22 16 17 C -0.11 -1.17 4.85 -27.25 -0.13 -1.30 16 18 C -0.09 -0.85 5.63 -27.49 -0.15 -1.00 16 19 C -0.16 -1.39 9.34 -35.28 -0.33 -1.71 16 20 C -0.16 -1.39 9.34 -35.29 -0.33 -1.72 16 21 C -0.09 -0.77 5.61 -27.54 -0.15 -0.92 16 22 C -0.11 -1.03 4.90 -27.30 -0.13 -1.16 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 25 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.39 6.00 6.89 -40.82 -0.28 5.72 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.93 8.05 -51.93 -0.42 0.51 16 30 H 0.07 0.77 7.89 -51.93 -0.41 0.37 16 31 H 0.06 0.74 7.86 -51.93 -0.41 0.33 16 32 H 0.07 0.79 6.75 -51.93 -0.35 0.44 16 33 H 0.07 0.63 6.68 -51.93 -0.35 0.29 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.10 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.07 0.61 6.68 -51.93 -0.35 0.26 16 38 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.07 0.64 8.03 -51.93 -0.42 0.22 16 40 H 0.07 0.66 7.86 -51.93 -0.41 0.26 16 LS Contribution 313.66 15.07 4.73 4.73 Total: -1.00 -31.20 313.66 -8.22 -39.42 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.54 Total: 2.33 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -1.79 Total: -10.72 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.32 Total: -38.20 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.09 Total: -14.61 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.20 -8.22 -39.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886013752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.647 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds