Wall clock time and date at job start Sun Mar 29 2020 23:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.50701 * 109.46990 * 239.99612 * 2 1 3 5 5 H 1.07998 * 120.00129 * 239.99760 * 4 2 1 6 6 C 1.37880 * 119.99861 * 60.00478 * 4 2 1 7 7 N 1.31510 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47204 * 90.00103 * 8 6 4 10 10 H 1.48497 * 109.46999 * 209.99591 * 8 6 4 11 11 H 1.48495 * 109.47119 * 329.99709 * 8 6 4 12 12 C 1.50703 * 109.46946 * 119.99872 * 2 1 3 13 13 O 1.21278 * 119.99985 * 120.00236 * 12 2 1 14 14 N 1.34779 * 119.99944 * 299.99948 * 12 2 1 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.46840 * 180.02562 * 15 14 12 17 17 C 1.51851 * 108.64878 * 296.97580 * 16 15 14 18 18 C 1.53120 * 110.72344 * 172.26278 * 17 16 15 19 19 C 1.51374 * 108.47392 * 85.92435 * 18 17 16 20 20 C 1.29525 * 120.36311 * 288.06762 * 19 18 17 21 21 C 1.51370 * 120.35569 * 0.02562 * 20 19 18 22 22 C 1.51852 * 108.64951 * 173.01973 * 16 15 14 23 23 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47108 * 300.00256 * 1 2 3 25 25 H 1.09004 * 109.47368 * 60.00155 * 1 2 3 26 26 H 0.97002 * 119.99768 * 180.02562 * 7 6 4 27 27 H 0.97000 * 119.99708 * 359.97438 * 14 12 2 28 28 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 29 29 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 30 30 H 1.08991 * 108.60570 * 54.99956 * 16 15 14 31 31 H 1.08999 * 109.22498 * 292.73038 * 17 16 15 32 32 H 1.08998 * 109.22033 * 52.07748 * 17 16 15 33 33 H 1.09002 * 109.69360 * 326.22466 * 18 17 16 34 34 H 1.08997 * 109.81792 * 205.70101 * 18 17 16 35 35 H 1.08002 * 119.81820 * 108.08985 * 19 18 17 36 36 H 1.08001 * 119.82273 * 180.02562 * 20 19 18 37 37 H 1.08997 * 109.61804 * 312.15921 * 21 20 19 38 38 H 1.09008 * 109.61143 * 191.64078 * 21 20 19 39 39 H 1.09001 * 109.21628 * 307.92157 * 22 16 15 40 40 H 1.09001 * 109.22243 * 67.26597 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1405 -5.1120 11 1 3.6307 -1.7567 -3.7118 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7066 -0.2499 2.4546 15 6 2.1954 -0.9401 3.6508 16 6 1.6847 -0.2193 4.9000 17 6 2.2611 1.1855 4.9197 18 6 1.6326 2.0133 6.0441 19 6 2.4079 1.7576 7.3188 20 6 2.3036 0.6214 7.9319 21 6 1.4055 -0.4654 7.3810 22 6 2.0538 -1.0431 6.1210 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7082 1.1607 -3.4844 27 1 1.1493 0.5390 2.5435 28 1 3.2854 -0.9398 3.6507 29 1 1.8324 -1.9679 3.6509 30 1 0.5986 -0.1497 4.8417 31 1 3.3389 1.1291 5.0719 32 1 2.0592 1.6696 3.9642 33 1 0.5931 1.7159 6.1822 34 1 1.6797 3.0730 5.7935 35 1 3.0513 2.5270 7.7196 36 1 2.8604 0.4485 8.8410 37 1 0.4319 -0.0439 7.1310 38 1 1.2858 -1.2532 8.1249 39 1 1.7115 -2.0682 5.9791 40 1 3.1371 -1.0407 6.2415 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886013752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:31 Heat of formation + Delta-G solvation = -68.421721 kcal Electronic energy + Delta-G solvation = -18570.376299 eV Core-core repulsion = 15769.387823 eV Total energy + Delta-G solvation = -2800.988476 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.79832 -39.58472 -36.11557 -35.73854 -33.46428 -32.68005 -32.14441 -28.09765 -27.17673 -24.99987 -24.80360 -23.44888 -21.36126 -20.80610 -18.82198 -18.37217 -17.86357 -17.06984 -16.77814 -16.34886 -16.20049 -15.49415 -14.95001 -14.76227 -14.51305 -14.12570 -13.99935 -13.80100 -13.52009 -13.17847 -12.96609 -12.68121 -12.59463 -12.51815 -12.42708 -12.19157 -12.01750 -11.68826 -11.53506 -11.39233 -11.16009 -11.03317 -10.59893 -10.29570 -9.93045 -9.83896 -8.14751 -6.25074 1.40804 1.41251 1.48820 1.53437 1.95213 2.37511 2.57165 3.14677 3.69923 3.73248 3.92197 4.16265 4.28233 4.33130 4.37852 4.56901 4.59622 4.65015 4.68782 4.74582 4.79243 4.94441 4.95969 5.00643 5.02311 5.07417 5.14706 5.30107 5.31652 5.36118 5.50659 5.51087 5.64658 5.76271 5.86460 5.95342 6.11284 6.22675 6.75646 6.87751 7.40665 7.56858 8.91056 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.047644 B = 0.004102 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.555134 B = 6823.530083 C = 7077.818069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.022 3.978 3 H 0.041 0.959 4 C -0.530 4.530 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.279 1.279 12 C 0.518 3.482 13 O -0.591 6.591 14 N -0.723 5.723 15 C 0.121 3.879 16 C -0.083 4.083 17 C -0.109 4.109 18 C -0.089 4.089 19 C -0.165 4.165 20 C -0.164 4.164 21 C -0.088 4.088 22 C -0.104 4.104 23 H 0.022 0.978 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.265 0.735 27 H 0.409 0.591 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 2.976 20.586 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.001 3.999 3 H 0.059 0.941 4 C -0.569 4.569 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.205 1.205 12 C 0.307 3.693 13 O -0.471 6.471 14 N -0.377 5.377 15 C -0.002 4.002 16 C -0.102 4.102 17 C -0.147 4.147 18 C -0.126 4.126 19 C -0.183 4.183 20 C -0.182 4.182 21 C -0.125 4.125 22 C -0.142 4.142 23 H 0.041 0.959 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.246 0.754 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.234 2.387 20.377 20.553 hybrid contribution 0.342 -0.103 -1.004 1.065 sum -0.892 2.284 19.373 19.528 Atomic orbital electron populations 1.21547 0.94961 0.99381 1.01745 1.18820 0.95424 0.95918 0.89705 0.94095 1.21299 1.31614 1.12718 0.91245 0.93494 1.25591 0.95205 0.95741 1.01391 1.69946 1.37213 1.23542 1.24299 0.85599 0.78622 0.78564 0.79127 1.19937 1.19873 1.20456 1.21565 0.78226 0.83687 0.85783 1.90499 1.40132 1.28849 1.87647 1.46050 1.54229 1.32524 1.04868 1.21477 0.98384 0.96020 0.84351 1.20990 1.01341 0.95028 0.92793 1.21349 1.00301 0.94330 0.98701 1.20821 0.99185 1.00155 0.92466 1.22686 1.00519 0.98125 0.96989 1.22702 1.00121 0.95329 1.00001 1.20793 0.98088 0.97207 0.96395 1.21231 1.01141 0.98862 0.92994 0.95925 0.92878 0.91090 0.92586 0.75433 0.93514 0.92959 0.89840 0.92509 0.91933 0.90415 0.90846 0.87105 0.86829 0.90647 0.90304 0.91075 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.87 71.98 0.64 -4.78 16 2 C 0.02 1.15 2.64 -12.29 -0.03 1.12 16 3 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 4 C -0.53 -31.29 8.37 25.60 0.21 -31.08 16 5 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 6 C 0.02 1.12 5.30 84.66 0.45 1.57 16 7 N -0.91 -51.48 11.32 21.45 0.24 -51.24 16 8 Si 0.96 45.43 29.54 68.60 2.03 47.45 16 9 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 12 C 0.52 24.32 7.15 87.66 0.63 24.95 16 13 O -0.59 -32.51 15.46 -3.02 -0.05 -32.55 16 14 N -0.72 -24.75 5.05 -463.05 -2.34 -27.09 16 15 C 0.12 3.52 5.00 86.38 0.43 3.95 16 16 C -0.08 -1.67 1.77 -11.55 -0.02 -1.69 16 17 C -0.11 -2.14 4.85 30.26 0.15 -1.99 16 18 C -0.09 -1.43 5.63 30.10 0.17 -1.26 16 19 C -0.17 -2.58 9.34 27.37 0.26 -2.32 16 20 C -0.16 -2.43 9.34 27.37 0.26 -2.18 16 21 C -0.09 -1.25 5.61 30.07 0.17 -1.08 16 22 C -0.10 -1.81 4.90 30.22 0.15 -1.66 16 23 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.05 1.94 7.56 -2.38 -0.02 1.92 16 25 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 26 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.41 11.69 6.89 -92.71 -0.64 11.05 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.62 8.05 -2.39 -0.02 1.60 16 30 H 0.08 1.55 7.89 -2.39 -0.02 1.53 16 31 H 0.06 1.22 7.86 -2.39 -0.02 1.20 16 32 H 0.06 1.31 6.75 -2.39 -0.02 1.30 16 33 H 0.08 1.16 6.68 -2.39 -0.02 1.14 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.11 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.11 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.08 1.05 6.68 -2.39 -0.02 1.03 16 38 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.07 1.20 8.03 -2.39 -0.02 1.18 16 40 H 0.06 1.13 7.86 -2.39 -0.02 1.11 16 Total: -1.00 -67.41 313.66 3.71 -63.70 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.37 Total: 16.17 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 3.45 Total: -16.45 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -2.09 Total: -78.32 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.05 Total: -32.55 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -67.41 3.71 -63.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886013752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.718 kcal (2) G-P(sol) polarization free energy of solvation -67.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds