Wall clock time and date at job start Sun Mar 29 2020 22:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99920 * 2 1 4 4 N 1.46897 * 109.46859 * 124.16570 * 3 2 1 5 5 C 1.46901 * 111.00029 * 301.22134 * 4 3 2 6 6 C 1.50700 * 109.47062 * 288.23982 * 5 4 3 7 7 H 1.08002 * 120.00435 * 354.76823 * 6 5 4 8 8 C 1.37880 * 120.00093 * 174.76039 * 6 5 4 9 9 N 1.31516 * 120.00043 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00124 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47626 * 89.99889 * 10 8 6 12 12 H 1.48498 * 109.47062 * 210.00378 * 10 8 6 13 13 H 1.48508 * 109.47051 * 329.99975 * 10 8 6 14 14 C 1.46906 * 111.00241 * 65.17543 * 4 3 2 15 15 C 1.52991 * 109.47095 * 66.04520 * 14 4 3 16 16 H 1.09004 * 115.59048 * 29.18237 * 15 14 4 17 17 C 1.53186 * 117.52542 * 243.37238 * 15 14 4 18 18 C 1.52105 * 117.52296 * 174.99995 * 15 14 4 19 19 C 1.53710 * 121.74677 * 218.51289 * 18 15 14 20 20 C 1.54698 * 103.69271 * 143.51324 * 19 18 15 21 21 O 1.44492 * 104.87204 * 23.83088 * 20 19 18 22 22 C 1.44646 * 105.46608 * 320.02885 * 21 20 19 23 23 H 1.08001 * 119.99805 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.00086 * 180.02562 * 1 2 3 25 25 H 1.08001 * 119.99805 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.47158 * 4.16348 * 3 2 1 27 27 H 1.09000 * 109.47013 * 244.15856 * 3 2 1 28 28 H 1.09000 * 109.47026 * 48.24454 * 5 4 3 29 29 H 1.09001 * 109.47511 * 168.24503 * 5 4 3 30 30 H 0.96999 * 120.00090 * 179.97438 * 9 8 6 31 31 H 1.09005 * 109.46634 * 306.04534 * 14 4 3 32 32 H 1.09000 * 109.46991 * 186.04783 * 14 4 3 33 33 H 1.08999 * 117.52696 * 145.15208 * 17 15 14 34 34 H 1.09003 * 117.56249 * 359.97438 * 17 15 14 35 35 H 1.09001 * 110.57816 * 262.06114 * 19 18 15 36 36 H 1.08996 * 110.58049 * 24.80646 * 19 18 15 37 37 H 1.08997 * 110.36066 * 142.67920 * 20 19 18 38 38 H 1.09006 * 110.35682 * 264.98833 * 20 19 18 39 39 H 1.09001 * 110.41207 * 280.88796 * 22 21 20 40 40 H 1.08993 * 110.41902 * 158.42882 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9819 1.3402 1.1460 5 6 2.2507 1.1910 2.4113 6 6 1.4737 2.4509 2.6940 7 1 1.5839 3.3098 2.0485 8 6 0.6217 2.5072 3.7767 9 7 0.4876 1.4615 4.5630 10 14 -0.3420 4.0686 4.1267 11 1 -1.6462 4.0147 3.4185 12 1 -0.5768 4.1882 5.5881 13 1 0.4309 5.2443 3.6517 14 6 4.0249 0.3138 1.0165 15 6 4.9210 0.6453 -0.1784 16 1 5.0153 1.7048 -0.4166 17 6 4.9407 -0.3469 -1.3454 18 6 6.1368 -0.2384 -0.4117 19 6 7.4798 0.3417 -0.8835 20 6 8.5306 -0.5110 -0.1338 21 8 7.8531 -1.7501 0.1717 22 6 6.5113 -1.3713 0.5568 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3576 2.1322 0.0746 27 1 2.6331 1.3958 -0.9249 28 1 1.5628 0.3489 2.3363 29 1 2.9582 1.0113 3.2208 30 1 -0.1114 1.5012 5.3248 31 1 3.5594 -0.6597 0.8625 32 1 4.6257 0.2897 1.9256 33 1 5.0479 0.0601 -2.3508 34 1 4.3157 -1.2360 -1.2620 35 1 7.5901 0.2248 -1.9616 36 1 7.5636 1.3915 -0.6025 37 1 9.3932 -0.6981 -0.7733 38 1 8.8393 -0.0112 0.7844 39 1 6.4982 -1.0118 1.5857 40 1 5.8297 -2.2136 0.4386 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886215941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:08 Heat of formation + Delta-G solvation = -15.409917 kcal Electronic energy + Delta-G solvation = -18782.601163 eV Core-core repulsion = 15983.911452 eV Total energy + Delta-G solvation = -2798.689712 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.98093 -39.05421 -36.93273 -34.79578 -33.57752 -31.38636 -29.58558 -28.17050 -27.75996 -25.73505 -23.61013 -22.77585 -22.07323 -20.47500 -19.78692 -18.33351 -17.26527 -17.09296 -16.64538 -16.40366 -16.08677 -15.90846 -15.44208 -14.98446 -14.58865 -14.35339 -14.03985 -13.60574 -13.39846 -13.22631 -13.04092 -12.79197 -12.56452 -12.34533 -12.28640 -12.20045 -12.11063 -11.97132 -11.80550 -11.28519 -10.91403 -10.68788 -10.57858 -10.51473 -10.14494 -8.93809 -8.15543 -6.24577 1.41455 1.42436 1.47189 1.53792 2.42055 2.66975 3.06559 3.17133 3.32282 3.50258 3.78268 3.95435 4.00998 4.09833 4.24666 4.29056 4.41704 4.52337 4.56719 4.64505 4.71369 4.74008 4.82726 4.84196 4.88662 4.94971 4.99803 5.07448 5.14589 5.17577 5.24716 5.34901 5.37716 5.69245 5.74905 5.81219 5.92626 6.13872 6.41623 6.68907 6.91947 7.44619 8.94702 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.028371 B = 0.004975 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.674208 B = 5627.253710 C = 6034.501832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.096 3.904 4 N -0.535 5.535 5 C 0.206 3.794 6 C -0.514 4.514 7 H 0.059 0.941 8 C 0.005 3.995 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.266 1.266 14 C 0.086 3.914 15 C -0.120 4.120 16 H 0.111 0.889 17 C -0.147 4.147 18 C -0.160 4.160 19 C -0.114 4.114 20 C 0.041 3.959 21 O -0.396 6.396 22 C 0.078 3.922 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.059 0.941 27 H 0.091 0.909 28 H -0.017 1.017 29 H -0.008 1.008 30 H 0.262 0.738 31 H 0.029 0.971 32 H 0.055 0.945 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.698 -3.329 -12.723 16.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.204 4.204 3 C -0.032 4.032 4 N -0.257 5.257 5 C 0.080 3.920 6 C -0.553 4.553 7 H 0.077 0.923 8 C -0.193 4.193 9 N -0.575 5.575 10 Si 0.787 3.213 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C -0.042 4.042 15 C -0.139 4.139 16 H 0.129 0.871 17 C -0.184 4.184 18 C -0.161 4.161 19 C -0.152 4.152 20 C -0.035 4.035 21 O -0.316 6.316 22 C 0.002 3.998 23 H 0.107 0.893 24 H 0.121 0.879 25 H 0.123 0.877 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.000 1.000 29 H 0.010 0.990 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.131 0.869 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.964 -3.125 -12.559 16.962 hybrid contribution -1.247 -0.078 0.864 1.519 sum 9.717 -3.202 -11.695 15.539 Atomic orbital electron populations 1.23837 0.96210 1.01631 1.00517 1.23545 0.96813 0.99815 1.00210 1.21188 0.94337 0.93904 0.93774 1.62270 1.13657 1.46910 1.02862 1.19387 0.91207 0.95490 0.85920 1.21410 1.23581 0.99418 1.10859 0.92310 1.25810 0.97998 0.99541 0.95949 1.70083 1.38928 1.31426 1.17064 0.85495 0.78904 0.79761 0.77150 1.19897 1.20997 1.19024 1.21579 0.92698 0.92877 0.97063 1.22135 0.97409 0.97382 0.96971 0.87124 1.23150 0.98844 1.00908 0.95478 1.22293 0.91490 1.00029 1.02295 1.22405 0.91013 1.00233 1.01516 1.23619 0.96100 0.84263 0.99525 1.89112 1.24482 1.29670 1.88311 1.22781 0.83942 0.96436 0.96673 0.89339 0.87946 0.87727 0.92214 0.89098 0.99970 0.99041 0.92920 0.95260 0.92701 0.86937 0.88754 0.89190 0.89528 0.87183 0.91906 0.92326 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.46 14.32 67.78 0.97 -5.49 16 2 C -0.18 -6.55 7.39 25.64 0.19 -6.36 16 3 C 0.10 3.55 5.50 85.56 0.47 4.02 16 4 N -0.53 -22.42 4.66 -905.37 -4.22 -26.63 16 5 C 0.21 10.85 4.58 85.56 0.39 11.24 16 6 C -0.51 -28.98 8.54 25.60 0.22 -28.76 16 7 H 0.06 3.28 7.65 -2.91 -0.02 3.25 16 8 C 0.00 0.27 5.46 84.66 0.46 0.73 16 9 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 10 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 14 C 0.09 2.97 4.43 86.30 0.38 3.35 16 15 C -0.12 -3.21 4.61 -11.03 -0.05 -3.27 16 16 H 0.11 3.06 8.14 -2.38 -0.02 3.04 16 17 C -0.15 -3.19 9.94 30.37 0.30 -2.89 16 18 C -0.16 -3.66 2.50 -52.30 -0.13 -3.79 16 19 C -0.11 -2.10 6.88 31.41 0.22 -1.89 16 20 C 0.04 0.78 7.65 72.56 0.56 1.33 16 21 O -0.40 -10.11 11.65 -148.98 -1.74 -11.85 16 22 C 0.08 1.94 6.72 72.21 0.49 2.43 16 23 H 0.09 3.23 7.84 -2.91 -0.02 3.20 16 24 H 0.10 3.17 8.06 -2.91 -0.02 3.15 16 25 H 0.10 3.47 6.83 -2.91 -0.02 3.45 16 26 H 0.06 2.46 7.06 -2.39 -0.02 2.44 16 27 H 0.09 2.84 7.13 -2.39 -0.02 2.82 16 28 H -0.02 -0.99 6.67 -2.39 -0.02 -1.01 16 29 H -0.01 -0.49 7.81 -2.39 -0.02 -0.51 16 30 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.03 1.00 6.13 -2.38 -0.01 0.99 16 32 H 0.05 2.03 7.52 -2.39 -0.02 2.01 16 33 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.09 2.07 8.04 -2.39 -0.02 2.05 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.06 1.53 7.80 -2.39 -0.02 1.52 16 40 H 0.09 2.18 8.12 -2.39 -0.02 2.16 16 Total: -1.00 -63.71 322.80 1.81 -61.90 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.99 Total: 15.48 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: 4.46 Total: -29.34 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -3.93 Total: -82.58 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -1.74 Total: -11.85 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -63.71 1.81 -61.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886215941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.493 kcal (2) G-P(sol) polarization free energy of solvation -63.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds