Wall clock time and date at job start Sun Mar 29 2020 23:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47151 * 2 1 4 4 C 1.50708 * 109.46875 * 240.00655 * 2 1 3 5 5 H 1.07991 * 119.99789 * 240.00567 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99878 * 4 2 1 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 C 1.50703 * 109.47211 * 120.00993 * 2 1 3 13 13 O 1.21276 * 120.00028 * 119.99419 * 12 2 1 14 14 N 1.34772 * 119.99420 * 299.99749 * 12 2 1 15 15 C 1.46498 * 119.99907 * 180.02562 * 14 12 2 16 16 H 1.09004 * 109.47593 * 34.99577 * 15 14 12 17 17 C 1.52954 * 109.47362 * 274.99023 * 15 14 12 18 18 C 1.52938 * 109.82060 * 177.02181 * 17 15 14 19 19 C 1.53174 * 109.45702 * 62.98312 * 18 17 15 20 20 C 1.53158 * 108.88242 * 303.43321 * 19 18 17 21 21 C 1.52850 * 117.67651 * 268.50722 * 20 19 18 22 22 C 1.52799 * 117.75201 * 199.62611 * 20 19 18 23 23 C 1.53147 * 115.00968 * 53.93280 * 20 19 18 24 24 H 1.08996 * 109.47696 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46607 * 299.99478 * 1 2 3 26 26 H 1.09003 * 109.47241 * 59.99009 * 1 2 3 27 27 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 28 28 H 0.97000 * 120.00604 * 0.02562 * 14 12 2 29 29 H 1.08998 * 109.41085 * 297.13027 * 17 15 14 30 30 H 1.08993 * 109.41204 * 56.91241 * 17 15 14 31 31 H 1.09003 * 109.47415 * 182.97341 * 18 17 15 32 32 H 1.08992 * 109.47525 * 302.97880 * 18 17 15 33 33 H 1.09004 * 109.57209 * 63.24854 * 19 18 17 34 34 H 1.09000 * 109.57146 * 183.49257 * 19 18 17 35 35 H 1.08996 * 117.50314 * 359.72328 * 21 20 19 36 36 H 1.08996 * 117.49917 * 144.77796 * 21 20 19 37 37 H 1.09004 * 117.50410 * 215.11042 * 22 20 19 38 38 H 1.09008 * 117.50349 * 0.12085 * 22 20 19 39 39 H 1.08996 * 109.57351 * 186.24634 * 23 20 19 40 40 H 1.09008 * 109.56903 * 65.88449 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1371 -0.8593 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8021 0.8748 -2.6992 10 1 0.9771 1.9958 -3.9068 11 1 0.8491 2.1775 -1.4921 12 6 2.0324 -0.7106 1.2304 13 8 2.7295 -1.6967 1.1189 14 7 1.7068 -0.2503 2.4544 15 6 2.1955 -0.9407 3.6505 16 1 3.1949 -1.3326 3.4611 17 6 1.2522 -2.0944 3.9946 18 6 1.7946 -2.8664 5.1983 19 6 1.8329 -1.9443 6.4207 20 6 2.6764 -0.7109 6.0850 21 6 4.1697 -0.7629 6.4071 22 6 3.2339 0.1080 7.2483 23 6 2.2468 0.0435 4.8233 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 1.9030 -0.5275 -4.4376 28 1 1.1488 0.5382 2.5436 29 1 0.2658 -1.6969 4.2337 30 1 1.1735 -2.7654 3.1393 31 1 1.1466 -3.7181 5.4057 32 1 2.8016 -3.2210 4.9788 33 1 0.8195 -1.6348 6.6766 34 1 2.2767 -2.4739 7.2638 35 1 4.5547 -1.6747 6.8636 36 1 4.8500 -0.2556 5.7232 37 1 3.2988 1.1883 7.1180 38 1 3.0031 -0.2305 8.2585 39 1 2.9669 0.8324 4.6066 40 1 1.2598 0.4798 4.9771 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888691933.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:44 Heat of formation + Delta-G solvation = -31.994742 kcal Electronic energy + Delta-G solvation = -18940.871133 eV Core-core repulsion = 16141.462249 eV Total energy + Delta-G solvation = -2799.408884 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.87914 -38.47463 -35.27343 -33.77253 -33.07217 -31.25883 -29.38173 -27.46027 -25.10146 -23.48898 -22.66232 -22.12151 -20.85574 -19.59245 -18.46099 -16.72768 -16.26989 -15.61307 -15.24996 -14.99522 -14.51309 -14.32837 -13.80463 -13.61446 -13.20359 -12.98554 -12.68675 -12.54039 -12.26711 -11.92161 -11.69225 -11.54837 -11.19838 -11.13033 -10.95513 -10.84033 -10.60856 -10.57608 -10.24129 -10.09330 -9.68064 -9.59692 -9.06533 -8.63021 -8.53913 -8.45715 -6.02280 -4.02128 3.25062 3.32570 3.38072 3.55359 3.64271 3.83230 4.40248 4.52475 4.58314 4.73147 4.89203 5.07837 5.12239 5.24877 5.28108 5.35272 5.44383 5.49145 5.59831 5.72742 5.76273 5.84075 5.88131 5.90586 5.98793 6.05849 6.13024 6.14856 6.25810 6.32601 6.40094 6.44554 6.52500 6.76408 7.08862 7.19848 7.58708 8.19920 8.59561 9.14559 9.20888 9.57151 11.10828 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.040630 B = 0.004839 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.983342 B = 5785.341024 C = 5905.110498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.006 4.006 3 H 0.051 0.949 4 C -0.504 4.504 5 H 0.093 0.907 6 C 0.069 3.931 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.279 1.279 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.529 3.471 13 O -0.531 6.531 14 N -0.745 5.745 15 C 0.150 3.850 16 H 0.084 0.916 17 C -0.129 4.129 18 C -0.113 4.113 19 C -0.081 4.081 20 C -0.117 4.117 21 C -0.174 4.174 22 C -0.176 4.176 23 C -0.087 4.087 24 H 0.057 0.943 25 H 0.032 0.968 26 H 0.048 0.952 27 H 0.264 0.736 28 H 0.393 0.607 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 2.897 21.282 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 H 0.068 0.932 4 C -0.542 4.542 5 H 0.111 0.889 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.715 3.285 9 H -0.206 1.206 10 H -0.224 1.224 11 H -0.193 1.193 12 C 0.317 3.683 13 O -0.405 6.405 14 N -0.398 5.398 15 C 0.044 3.956 16 H 0.102 0.898 17 C -0.167 4.167 18 C -0.151 4.151 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.211 4.211 22 C -0.213 4.213 23 C -0.125 4.125 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.226 0.774 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.899 2.155 20.958 21.154 hybrid contribution -0.912 1.249 -0.184 1.557 sum -2.812 3.403 20.774 21.238 Atomic orbital electron populations 1.22102 0.97394 1.01441 0.99139 1.19318 0.93159 0.97525 0.92785 0.93151 1.20954 1.31952 1.14045 0.87253 0.88904 1.24987 0.95866 0.96568 0.95778 1.69886 1.45597 1.40206 0.97841 0.86908 0.80695 0.83865 0.77009 1.20563 1.22361 1.19302 1.21232 0.78791 0.84292 0.83991 1.90574 1.37195 1.26265 1.86488 1.46326 1.55398 1.32491 1.05626 1.20762 0.98734 0.92021 0.84036 0.89764 1.21886 0.98834 0.97826 0.98200 1.21464 1.01693 0.97623 0.94367 1.21163 0.99172 0.93812 0.97642 1.21382 0.95655 0.98643 0.96070 1.23040 0.92677 1.01998 1.03351 1.22981 1.04601 0.98044 0.95701 1.21390 1.01773 0.97130 0.92158 0.92424 0.94871 0.93381 0.92616 0.77386 0.92175 0.91164 0.91891 0.91667 0.91595 0.91978 0.88882 0.88746 0.88936 0.88975 0.91321 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.57 37.16 0.32 -2.65 16 2 C -0.01 -0.15 2.23 -92.92 -0.21 -0.35 16 3 H 0.05 1.16 7.20 -51.93 -0.37 0.78 16 4 C -0.50 -14.73 8.96 -34.44 -0.31 -15.04 16 5 H 0.09 3.10 7.00 -52.49 -0.37 2.73 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 8 Si 0.88 21.52 24.37 -169.99 -4.14 17.37 16 9 H -0.28 -6.56 6.87 56.52 0.39 -6.17 16 10 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.27 -6.06 6.53 56.52 0.37 -5.69 16 12 C 0.53 11.63 7.11 -10.99 -0.08 11.55 16 13 O -0.53 -13.82 15.12 5.56 0.08 -13.74 16 14 N -0.75 -12.20 4.97 -53.74 -0.27 -12.47 16 15 C 0.15 2.14 2.46 -67.86 -0.17 1.97 16 16 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 17 C -0.13 -1.73 5.39 -26.79 -0.14 -1.88 16 18 C -0.11 -1.25 5.93 -26.67 -0.16 -1.41 16 19 C -0.08 -0.76 5.67 -26.56 -0.15 -0.91 16 20 C -0.12 -1.15 1.97 -154.53 -0.31 -1.46 16 21 C -0.17 -1.65 9.93 -26.79 -0.27 -1.92 16 22 C -0.18 -1.50 9.99 -26.82 -0.27 -1.77 16 23 C -0.09 -0.95 5.14 -26.56 -0.14 -1.09 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.03 0.54 7.56 -51.93 -0.39 0.15 16 26 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 27 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 28 H 0.39 5.36 8.02 -40.82 -0.33 5.03 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 40 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 LS Contribution 312.43 15.07 4.71 4.71 Total: -1.00 -32.86 312.43 -7.51 -40.37 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.70 Total: 3.99 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -1.97 Total: -13.02 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.51 Total: -39.69 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.08 Total: -13.74 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.14 Total: 17.37 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.86 -7.51 -40.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888691933.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.379 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds