Wall clock time and date at job start Sun Mar 29 2020 23:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47051 * 2 1 4 4 C 1.50701 * 109.47093 * 239.99820 * 2 1 3 5 5 H 1.08001 * 119.99848 * 245.46262 * 4 2 1 6 6 C 1.37878 * 119.99887 * 65.46037 * 4 2 1 7 7 N 1.31511 * 119.99740 * 198.47942 * 6 4 2 8 8 Si 1.86799 * 120.00064 * 18.47434 * 6 4 2 9 9 H 1.48508 * 109.46891 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.47231 * 299.99621 * 8 6 4 11 11 H 1.48498 * 109.47230 * 60.00088 * 8 6 4 12 12 C 1.50695 * 109.47000 * 119.99916 * 2 1 3 13 13 O 1.21282 * 120.00227 * 108.15353 * 12 2 1 14 14 N 1.34783 * 120.00025 * 288.15226 * 12 2 1 15 15 C 1.47068 * 136.05692 * 5.47218 * 14 12 2 16 16 C 1.53496 * 87.98459 * 152.84474 * 15 14 12 17 17 C 1.47069 * 136.05768 * 185.10829 * 14 12 2 18 18 H 1.08999 * 113.46740 * 92.37488 * 17 14 12 19 19 C 1.52992 * 113.46670 * 321.93511 * 17 14 12 20 20 C 1.54266 * 110.03439 * 182.83902 * 19 17 14 21 21 C 1.54889 * 104.19713 * 217.10646 * 20 19 17 22 22 C 1.54888 * 102.74972 * 37.93973 * 21 20 19 23 23 C 1.53881 * 110.03424 * 65.67025 * 19 17 14 24 24 H 1.08995 * 109.47259 * 175.70185 * 1 2 3 25 25 H 1.08997 * 109.47075 * 295.70471 * 1 2 3 26 26 H 1.09001 * 109.46732 * 55.69862 * 1 2 3 27 27 H 0.97004 * 120.00547 * 354.94269 * 7 6 4 28 28 H 1.08989 * 113.46953 * 267.62872 * 15 14 12 29 29 H 1.08997 * 113.46407 * 38.07088 * 15 14 12 30 30 H 1.09002 * 114.20734 * 139.65449 * 16 15 14 31 31 H 1.08994 * 114.21123 * 272.29029 * 16 15 14 32 32 H 1.09000 * 110.01938 * 304.28088 * 19 17 14 33 33 H 1.09005 * 110.48473 * 335.78172 * 20 19 17 34 34 H 1.08999 * 110.48906 * 98.42350 * 20 19 17 35 35 H 1.08998 * 110.75895 * 279.62313 * 21 20 19 36 36 H 1.08998 * 110.75467 * 156.25705 * 21 20 19 37 37 H 1.09002 * 110.48584 * 203.37676 * 22 21 20 38 38 H 1.09000 * 110.48567 * 80.73493 * 22 21 20 39 39 H 1.08994 * 110.03251 * 238.56830 * 23 19 17 40 40 H 1.08995 * 110.03260 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5786 -1.6371 -1.1338 6 6 1.7946 -0.1774 -2.4796 7 7 1.8949 -0.9369 -3.5485 8 14 1.3299 1.6234 -2.6536 9 1 1.1284 1.9462 -4.0891 10 1 0.0730 1.8847 -1.9070 11 1 2.4180 2.4709 -2.1032 12 6 2.0323 -0.7104 1.2304 13 8 2.5430 -1.8060 1.1321 14 7 1.9141 -0.1281 2.4402 15 6 1.2916 1.0941 2.9709 16 6 1.1461 0.3706 4.3168 17 6 2.3453 -0.4385 3.8116 18 1 3.3075 0.0013 4.0741 19 6 2.2613 -1.9272 4.1544 20 6 2.6622 -2.1540 5.6267 21 6 3.4410 -3.4926 5.6064 22 6 4.2372 -3.4048 4.2808 23 6 3.2627 -2.7226 3.2986 24 1 -0.3633 -1.0247 -0.0770 25 1 -0.3633 0.4457 0.9259 26 1 -0.3633 0.5792 -0.8490 27 1 2.2070 -1.8517 -3.4661 28 1 1.9701 1.9462 3.0072 29 1 0.3374 1.3340 2.5018 30 1 1.3591 0.9945 5.1849 31 1 0.2274 -0.2073 4.4166 32 1 1.2492 -2.2933 3.9816 33 1 3.3034 -1.3448 5.9764 34 1 1.7754 -2.2379 6.2549 35 1 2.7543 -4.3389 5.5893 36 1 4.1167 -3.5593 6.4592 37 1 4.5000 -4.4018 3.9269 38 1 5.1327 -2.7977 4.4131 39 1 2.7368 -3.4752 2.7113 40 1 3.8089 -2.0480 2.6394 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889414290.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:19 Heat of formation + Delta-G solvation = -14.419554 kcal Electronic energy + Delta-G solvation = -19464.602459 eV Core-core repulsion = 16665.955692 eV Total energy + Delta-G solvation = -2798.646766 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.37900 -37.57829 -36.82941 -33.70818 -31.28554 -29.60177 -28.89590 -28.24722 -24.84941 -24.27585 -22.93175 -20.82432 -20.49264 -19.61672 -18.25851 -17.29602 -16.28588 -15.66609 -15.39294 -15.12025 -14.15649 -13.83225 -13.58392 -13.16879 -13.03781 -12.77065 -12.34764 -12.18355 -12.14341 -11.88742 -11.53078 -11.36654 -10.99745 -10.95962 -10.93930 -10.60874 -10.59359 -10.43295 -10.15881 -10.06229 -9.87743 -9.71326 -8.85928 -8.46449 -8.17236 -8.06387 -6.43329 -3.99998 3.33696 3.37795 3.40782 3.58302 3.64753 4.47023 4.49789 4.77927 4.81614 4.82644 5.12078 5.21130 5.30179 5.40732 5.44313 5.57422 5.61328 5.68335 5.74782 5.75707 5.80693 5.87877 5.91525 5.99844 6.10026 6.28068 6.29694 6.32445 6.38159 6.48009 6.55644 6.66202 6.77162 6.94569 7.00551 7.29452 7.94138 8.42553 8.51776 9.06630 9.20206 9.68273 10.98612 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.031416 B = 0.006380 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.061667 B = 4387.397410 C = 5035.337817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.011 3.989 3 H 0.036 0.964 4 C -0.589 4.589 5 H 0.074 0.926 6 C 0.030 3.970 7 N -0.905 5.905 8 Si 1.043 2.957 9 H -0.284 1.284 10 H -0.274 1.274 11 H -0.284 1.284 12 C 0.554 3.446 13 O -0.523 6.523 14 N -0.654 5.654 15 C 0.099 3.901 16 C -0.153 4.153 17 C 0.135 3.865 18 H 0.083 0.917 19 C -0.091 4.091 20 C -0.114 4.114 21 C -0.124 4.124 22 C -0.131 4.131 23 C -0.105 4.105 24 H 0.050 0.950 25 H 0.026 0.974 26 H 0.061 0.939 27 H 0.269 0.731 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.962 3.340 19.222 19.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.011 4.011 3 H 0.054 0.946 4 C -0.627 4.627 5 H 0.092 0.908 6 C -0.175 4.175 7 N -0.539 5.539 8 Si 0.872 3.128 9 H -0.210 1.210 10 H -0.200 1.200 11 H -0.211 1.211 12 C 0.346 3.654 13 O -0.398 6.398 14 N -0.392 5.392 15 C -0.025 4.025 16 C -0.191 4.191 17 C 0.031 3.969 18 H 0.101 0.899 19 C -0.111 4.111 20 C -0.152 4.152 21 C -0.161 4.161 22 C -0.169 4.169 23 C -0.142 4.142 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.102 3.762 17.757 18.185 hybrid contribution 0.505 -1.052 1.076 1.587 sum -0.597 2.711 18.833 19.036 Atomic orbital electron populations 1.22179 0.97060 1.01499 0.99443 1.19122 0.93666 0.96471 0.91849 0.94579 1.21950 1.40302 1.10723 0.89706 0.90819 1.25732 0.94744 1.04970 0.92075 1.70830 1.41889 1.09594 1.31572 0.84085 0.76899 0.75626 0.76203 1.21003 1.20048 1.21069 1.21104 0.76816 0.85721 0.81716 1.90578 1.43909 1.20544 1.84728 1.50129 1.58281 1.24497 1.06337 1.22843 0.98378 0.89459 0.91846 1.23454 0.99299 0.99326 0.97031 1.22629 0.97150 0.95227 0.81870 0.89948 1.21925 1.00310 0.94225 0.94600 1.22343 0.99561 0.97498 0.95820 1.22487 0.98605 0.97474 0.97576 1.22494 0.98481 1.00385 0.95495 1.22308 0.96177 0.99445 0.96279 0.93128 0.95506 0.92012 0.92073 0.90518 0.90425 0.90035 0.89109 0.91191 0.91689 0.91979 0.91838 0.92144 0.92283 0.92346 0.91620 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.85 37.16 0.33 -2.82 16 2 C 0.01 0.26 2.05 -92.92 -0.19 0.07 16 3 H 0.04 0.85 6.79 -51.93 -0.35 0.50 16 4 C -0.59 -17.30 8.63 -34.44 -0.30 -17.60 16 5 H 0.07 2.44 7.05 -52.49 -0.37 2.07 16 6 C 0.03 0.87 5.33 -17.82 -0.10 0.77 16 7 N -0.90 -28.40 13.70 55.43 0.76 -27.64 16 8 Si 1.04 24.93 26.44 -169.99 -4.49 20.43 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.27 -5.89 5.54 56.52 0.31 -5.58 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.55 12.71 7.14 -10.99 -0.08 12.63 16 13 O -0.52 -13.52 11.46 5.56 0.06 -13.46 16 14 N -0.65 -11.53 3.57 -177.61 -0.63 -12.17 16 15 C 0.10 1.28 8.23 -8.50 -0.07 1.21 16 16 C -0.15 -1.64 7.96 -26.35 -0.21 -1.85 16 17 C 0.13 1.88 3.04 -72.53 -0.22 1.66 16 18 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 19 C -0.09 -1.30 2.74 -89.50 -0.24 -1.55 16 20 C -0.11 -1.25 6.32 -25.07 -0.16 -1.41 16 21 C -0.12 -1.39 6.91 -24.74 -0.17 -1.56 16 22 C -0.13 -1.77 6.83 -25.07 -0.17 -1.94 16 23 C -0.10 -1.78 4.42 -25.61 -0.11 -1.89 16 24 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.03 0.48 6.28 -51.93 -0.33 0.15 16 26 H 0.06 1.36 4.85 -51.93 -0.25 1.11 16 27 H 0.27 8.54 8.73 -40.82 -0.36 8.18 16 28 H 0.08 0.87 8.14 -51.94 -0.42 0.45 16 29 H 0.08 0.98 6.51 -51.93 -0.34 0.65 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.97 8.07 -51.93 -0.42 0.55 16 32 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 33 H 0.06 0.65 7.83 -51.93 -0.41 0.24 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.28 7.59 -51.93 -0.39 0.89 16 40 H 0.08 1.63 5.79 -51.93 -0.30 1.33 16 LS Contribution 304.16 15.07 4.58 4.58 Total: -1.00 -32.85 304.16 -8.03 -40.88 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.62 Total: 1.63 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -1.69 Total: -14.26 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.13 Total: -39.81 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.06 Total: -13.46 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -4.49 Total: 20.43 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.85 -8.03 -40.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889414290.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.464 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds