Wall clock time and date at job start Sun Mar 29 2020 23:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47051 * 2 1 4 4 C 1.50701 * 109.47093 * 239.99820 * 2 1 3 5 5 H 1.08001 * 119.99848 * 245.46262 * 4 2 1 6 6 C 1.37878 * 119.99887 * 65.46037 * 4 2 1 7 7 N 1.31511 * 119.99740 * 198.47942 * 6 4 2 8 8 Si 1.86799 * 120.00064 * 18.47434 * 6 4 2 9 9 H 1.48508 * 109.46891 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.47231 * 299.99621 * 8 6 4 11 11 H 1.48498 * 109.47230 * 60.00088 * 8 6 4 12 12 C 1.50695 * 109.47000 * 119.99916 * 2 1 3 13 13 O 1.21282 * 120.00227 * 108.15353 * 12 2 1 14 14 N 1.34783 * 120.00025 * 288.15226 * 12 2 1 15 15 C 1.47068 * 136.05692 * 5.47218 * 14 12 2 16 16 C 1.53496 * 87.98459 * 152.84474 * 15 14 12 17 17 C 1.47069 * 136.05768 * 185.10829 * 14 12 2 18 18 H 1.08999 * 113.46740 * 92.37488 * 17 14 12 19 19 C 1.52992 * 113.46670 * 321.93511 * 17 14 12 20 20 C 1.54266 * 110.03439 * 182.83902 * 19 17 14 21 21 C 1.54889 * 104.19713 * 217.10646 * 20 19 17 22 22 C 1.54888 * 102.74972 * 37.93973 * 21 20 19 23 23 C 1.53881 * 110.03424 * 65.67025 * 19 17 14 24 24 H 1.08995 * 109.47259 * 175.70185 * 1 2 3 25 25 H 1.08997 * 109.47075 * 295.70471 * 1 2 3 26 26 H 1.09001 * 109.46732 * 55.69862 * 1 2 3 27 27 H 0.97004 * 120.00547 * 354.94269 * 7 6 4 28 28 H 1.08989 * 113.46953 * 267.62872 * 15 14 12 29 29 H 1.08997 * 113.46407 * 38.07088 * 15 14 12 30 30 H 1.09002 * 114.20734 * 139.65449 * 16 15 14 31 31 H 1.08994 * 114.21123 * 272.29029 * 16 15 14 32 32 H 1.09000 * 110.01938 * 304.28088 * 19 17 14 33 33 H 1.09005 * 110.48473 * 335.78172 * 20 19 17 34 34 H 1.08999 * 110.48906 * 98.42350 * 20 19 17 35 35 H 1.08998 * 110.75895 * 279.62313 * 21 20 19 36 36 H 1.08998 * 110.75467 * 156.25705 * 21 20 19 37 37 H 1.09002 * 110.48584 * 203.37676 * 22 21 20 38 38 H 1.09000 * 110.48567 * 80.73493 * 22 21 20 39 39 H 1.08994 * 110.03251 * 238.56830 * 23 19 17 40 40 H 1.08995 * 110.03260 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5786 -1.6371 -1.1338 6 6 1.7946 -0.1774 -2.4796 7 7 1.8949 -0.9369 -3.5485 8 14 1.3299 1.6234 -2.6536 9 1 1.1284 1.9462 -4.0891 10 1 0.0730 1.8847 -1.9070 11 1 2.4180 2.4709 -2.1032 12 6 2.0323 -0.7104 1.2304 13 8 2.5430 -1.8060 1.1321 14 7 1.9141 -0.1281 2.4402 15 6 1.2916 1.0941 2.9709 16 6 1.1461 0.3706 4.3168 17 6 2.3453 -0.4385 3.8116 18 1 3.3075 0.0013 4.0741 19 6 2.2613 -1.9272 4.1544 20 6 2.6622 -2.1540 5.6267 21 6 3.4410 -3.4926 5.6064 22 6 4.2372 -3.4048 4.2808 23 6 3.2627 -2.7226 3.2986 24 1 -0.3633 -1.0247 -0.0770 25 1 -0.3633 0.4457 0.9259 26 1 -0.3633 0.5792 -0.8490 27 1 2.2070 -1.8517 -3.4661 28 1 1.9701 1.9462 3.0072 29 1 0.3374 1.3340 2.5018 30 1 1.3591 0.9945 5.1849 31 1 0.2274 -0.2073 4.4166 32 1 1.2492 -2.2933 3.9816 33 1 3.3034 -1.3448 5.9764 34 1 1.7754 -2.2379 6.2549 35 1 2.7543 -4.3389 5.5893 36 1 4.1167 -3.5593 6.4592 37 1 4.5000 -4.4018 3.9269 38 1 5.1327 -2.7977 4.4131 39 1 2.7368 -3.4752 2.7113 40 1 3.8089 -2.0480 2.6394 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889414290.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:18 Heat of formation + Delta-G solvation = -36.725020 kcal Electronic energy + Delta-G solvation = -19465.569696 eV Core-core repulsion = 16665.955692 eV Total energy + Delta-G solvation = -2799.614004 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.65722 -39.10194 -38.05778 -35.78022 -33.33890 -30.89073 -30.05284 -29.39229 -26.89270 -25.39057 -24.55428 -22.25592 -21.48547 -20.87164 -19.76585 -19.31901 -17.94976 -16.83257 -16.71528 -16.46989 -15.56536 -15.50226 -15.15269 -14.71635 -14.39755 -14.19376 -13.85357 -13.61791 -13.32770 -13.28730 -13.14522 -12.98121 -12.49706 -12.21515 -12.05008 -11.93441 -11.90471 -11.80241 -11.56936 -11.50639 -11.41105 -11.02795 -10.96167 -10.47479 -10.06195 -9.51830 -8.81788 -6.39428 1.43062 1.54273 1.72233 1.89944 2.08574 2.49902 3.04474 3.46409 3.72355 3.76417 3.79238 3.93817 4.21682 4.27218 4.39527 4.41325 4.50709 4.56681 4.60486 4.65774 4.70802 4.76189 4.82056 4.84898 4.90637 4.97277 5.03319 5.08328 5.12664 5.22932 5.31130 5.38586 5.43883 5.46667 5.53887 5.58369 5.91068 6.00735 6.57117 6.93183 7.40721 7.53169 8.58455 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.031416 B = 0.006380 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.061667 B = 4387.397410 C = 5035.337817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.006 3.994 3 H 0.056 0.944 4 C -0.600 4.600 5 H 0.011 0.989 6 C -0.025 4.025 7 N -0.936 5.936 8 Si 1.089 2.911 9 H -0.288 1.288 10 H -0.227 1.227 11 H -0.261 1.261 12 C 0.542 3.458 13 O -0.575 6.575 14 N -0.662 5.662 15 C 0.089 3.911 16 C -0.123 4.123 17 C 0.124 3.876 18 H 0.097 0.903 19 C -0.091 4.091 20 C -0.102 4.102 21 C -0.118 4.118 22 C -0.130 4.130 23 C -0.103 4.103 24 H 0.024 0.976 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.246 0.754 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.019 0.981 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 6.968 23.273 24.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.016 4.016 3 H 0.074 0.926 4 C -0.638 4.638 5 H 0.029 0.971 6 C -0.221 4.221 7 N -0.572 5.572 8 Si 0.908 3.092 9 H -0.215 1.215 10 H -0.151 1.151 11 H -0.186 1.186 12 C 0.334 3.666 13 O -0.454 6.454 14 N -0.398 5.398 15 C -0.033 4.033 16 C -0.161 4.161 17 C 0.022 3.978 18 H 0.115 0.885 19 C -0.110 4.110 20 C -0.140 4.140 21 C -0.156 4.156 22 C -0.167 4.167 23 C -0.141 4.141 24 H 0.043 0.957 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.120 0.880 29 H 0.104 0.896 30 H 0.145 0.855 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.038 0.962 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.429 7.409 21.895 23.242 hybrid contribution 0.999 -2.284 -0.154 2.498 sum -1.429 5.125 21.741 22.382 Atomic orbital electron populations 1.22019 0.94750 1.00477 1.01888 1.19055 0.95360 0.96567 0.90636 0.92613 1.22041 1.39809 1.08966 0.92965 0.97104 1.27557 0.93863 1.09395 0.91302 1.70993 1.44500 1.08803 1.32867 0.83594 0.79460 0.69350 0.76831 1.21457 1.15058 1.18586 1.20795 0.76987 0.85398 0.83435 1.90581 1.46190 1.22706 1.85950 1.50119 1.57398 1.26287 1.05994 1.23309 0.98972 0.88557 0.92460 1.23378 0.97294 0.98087 0.97295 1.23038 0.99693 0.95448 0.79633 0.88513 1.21918 0.98217 0.94244 0.96610 1.22324 1.00800 0.97737 0.93108 1.22486 0.98669 0.97884 0.96521 1.22478 0.98337 0.99683 0.96236 1.22133 0.97122 0.98213 0.96623 0.95663 0.90953 0.91755 0.94534 0.87957 0.89612 0.85457 0.88869 0.93037 0.89577 0.89630 0.92037 0.89441 0.93032 0.91461 0.96224 0.94037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.64 8.85 71.98 0.64 -5.00 16 2 C 0.01 0.28 2.05 -12.29 -0.03 0.25 16 3 H 0.06 2.51 6.79 -2.39 -0.02 2.50 16 4 C -0.60 -37.27 8.63 25.60 0.22 -37.04 16 5 H 0.01 0.78 7.05 -2.91 -0.02 0.76 16 6 C -0.02 -1.49 5.33 84.66 0.45 -1.04 16 7 N -0.94 -61.93 13.70 21.45 0.29 -61.63 16 8 Si 1.09 49.10 26.44 68.60 1.81 50.91 16 9 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 10 H -0.23 -8.52 5.54 99.48 0.55 -7.97 16 11 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 12 C 0.54 25.63 7.14 87.65 0.63 26.25 16 13 O -0.58 -32.35 11.46 -3.03 -0.03 -32.38 16 14 N -0.66 -22.34 3.57 -834.21 -2.98 -25.32 16 15 C 0.09 1.88 8.23 83.18 0.68 2.56 16 16 C -0.12 -1.95 7.96 30.84 0.25 -1.71 16 17 C 0.12 3.11 3.04 41.70 0.13 3.24 16 18 H 0.10 2.20 8.10 -2.39 -0.02 2.18 16 19 C -0.09 -2.49 2.74 -10.07 -0.03 -2.52 16 20 C -0.10 -1.85 6.32 31.67 0.20 -1.65 16 21 C -0.12 -2.35 6.91 31.88 0.22 -2.13 16 22 C -0.13 -3.54 6.83 31.67 0.22 -3.33 16 23 C -0.10 -3.73 4.42 31.32 0.14 -3.59 16 24 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 2.36 6.28 -2.39 -0.01 2.35 16 26 H 0.06 2.65 4.85 -2.39 -0.01 2.63 16 27 H 0.25 16.92 8.73 -92.71 -0.81 16.12 16 28 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.09 1.71 6.51 -2.39 -0.02 1.69 16 30 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.51 8.07 -2.39 -0.02 1.49 16 32 H 0.05 1.59 8.08 -2.39 -0.02 1.57 16 33 H 0.09 1.25 7.83 -2.38 -0.02 1.23 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 39 H 0.02 0.84 7.59 -2.39 -0.02 0.82 16 40 H 0.04 1.81 5.79 -2.39 -0.01 1.79 16 Total: -1.00 -82.44 304.16 3.62 -78.82 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.81 Total: 15.31 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 3.71 Total: -25.71 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -2.68 Total: -86.95 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.03 Total: -32.38 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 1.81 Total: 50.91 kcal Total: -82.44 3.62 -78.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889414290.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.095 kcal (2) G-P(sol) polarization free energy of solvation -82.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds