Wall clock time and date at job start Sun Mar 29 2020 23:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42903 * 109.52306 * 200.36644 * 3 2 1 5 5 C 1.53114 * 109.52253 * 320.49986 * 3 2 1 6 6 C 1.53031 * 109.28184 * 62.31216 * 5 3 2 7 7 N 1.46848 * 109.52337 * 59.17971 * 6 5 3 8 8 C 1.46901 * 110.99899 * 174.16040 * 7 6 5 9 9 C 1.53003 * 109.46955 * 176.29777 * 8 7 6 10 10 H 1.09004 * 109.47177 * 301.81663 * 9 8 7 11 11 C 1.53001 * 109.46961 * 181.81990 * 9 8 7 12 12 C 1.52995 * 109.47573 * 61.81752 * 9 8 7 13 13 C 1.50695 * 109.47689 * 185.00100 * 12 9 8 14 14 H 1.08006 * 119.99388 * 0.02562 * 13 12 9 15 15 C 1.37876 * 120.00452 * 180.02562 * 13 12 9 16 16 N 1.31507 * 120.00295 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99737 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46934 * 90.00343 * 17 15 13 19 19 H 1.48501 * 109.46979 * 209.99976 * 17 15 13 20 20 H 1.48492 * 109.47068 * 330.00115 * 17 15 13 21 21 C 1.46846 * 111.19520 * 298.25670 * 7 6 5 22 22 C 1.53037 * 109.52276 * 61.74698 * 21 7 6 23 23 H 4.38558 * 5.44009 * 180.02562 * 4 1 2 24 24 H 0.96697 * 114.00001 * 300.13394 * 4 3 2 25 25 H 1.08997 * 109.50478 * 302.36696 * 5 3 2 26 26 H 1.08999 * 109.53182 * 182.27806 * 5 3 2 27 27 H 1.08992 * 109.46291 * 299.16376 * 6 5 3 28 28 H 1.09000 * 109.45412 * 179.18944 * 6 5 3 29 29 H 1.09002 * 109.47016 * 296.29134 * 8 7 6 30 30 H 1.09004 * 109.47235 * 56.29621 * 8 7 6 31 31 H 1.08998 * 109.47038 * 294.55885 * 11 9 8 32 32 H 1.08997 * 109.47187 * 54.56226 * 11 9 8 33 33 H 1.09003 * 109.46933 * 174.56083 * 11 9 8 34 34 H 1.09003 * 109.47262 * 305.00287 * 12 9 8 35 35 H 1.09003 * 109.46891 * 64.99695 * 12 9 8 36 36 H 0.97000 * 120.00606 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.45668 * 181.75562 * 21 7 6 38 38 H 1.09000 * 109.46477 * 301.72632 * 21 7 6 39 39 H 1.08999 * 109.50355 * 180.88079 * 22 21 7 40 40 H 1.08996 * 109.53907 * 60.77954 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 1.2635 0.4687 5 6 3.1582 -1.1127 0.9179 6 6 2.6950 -2.4670 0.3766 7 7 3.2122 -2.6541 -0.9850 8 6 2.9039 -4.0007 -1.4848 9 6 3.3754 -4.1267 -2.9349 10 1 2.8882 -3.3644 -3.5429 11 6 3.0138 -5.5138 -3.4700 12 6 4.8921 -3.9358 -2.9966 13 6 5.3407 -3.9375 -4.4352 14 1 4.6162 -4.0618 -5.2265 15 6 6.6758 -3.7803 -4.7414 16 7 7.0671 -3.7812 -5.9969 17 14 7.9287 -3.5645 -3.3727 18 1 8.4372 -4.8950 -2.9529 19 1 9.0587 -2.7347 -3.8624 20 1 7.2862 -2.8923 -2.2150 21 6 2.6958 -1.6240 -1.8953 22 6 3.1591 -0.2444 -1.4218 23 1 -1.0503 -0.0004 0.0000 24 1 2.8361 2.0158 -0.0669 25 1 2.7613 -0.9673 1.9226 26 1 4.2474 -1.0865 0.9497 27 1 1.6057 -2.4977 0.3587 28 1 3.0703 -3.2627 1.0201 29 1 3.4154 -4.7420 -0.8708 30 1 1.8280 -4.1687 -1.4366 31 1 3.5758 -6.2716 -2.9242 32 1 1.9460 -5.6874 -3.3371 33 1 3.2620 -5.5704 -4.5299 34 1 5.1578 -2.9851 -2.5343 35 1 5.3827 -4.7493 -2.4621 36 1 8.0064 -3.6702 -6.2123 37 1 3.0716 -1.8075 -2.9019 38 1 1.6064 -1.6586 -1.9025 39 1 2.7627 0.5213 -2.0886 40 1 4.2483 -0.2037 -1.4276 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895385058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:14 Heat of formation + Delta-G solvation = -1.912452 kcal Electronic energy + Delta-G solvation = -19177.841438 eV Core-core repulsion = 16379.737020 eV Total energy + Delta-G solvation = -2798.104418 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.79978 -37.22661 -34.87362 -32.97348 -32.12515 -30.91171 -30.68762 -27.64098 -25.76883 -23.62716 -23.14489 -22.03538 -20.85392 -18.76147 -18.25817 -16.83284 -16.68149 -15.93059 -15.02076 -14.86381 -14.51443 -14.26357 -13.96698 -13.48533 -13.17416 -12.57454 -12.39721 -12.09990 -12.05888 -11.70122 -11.46486 -11.21592 -11.17908 -11.00720 -10.94413 -10.77866 -10.68091 -10.58732 -10.35440 -9.94743 -9.64142 -9.54632 -9.36718 -8.92455 -8.43353 -7.95135 -5.94720 -3.90754 2.57492 2.65075 3.39454 3.46962 3.55480 4.01350 4.12081 4.21994 4.56064 4.78360 4.82051 5.21717 5.37371 5.40507 5.44310 5.54762 5.61226 5.62058 5.74203 5.77518 5.87358 5.93364 6.00673 6.11534 6.16781 6.21769 6.33585 6.35026 6.43920 6.83642 6.96876 7.09917 7.37159 7.40470 7.41847 7.44435 7.52200 7.66704 7.93200 8.64650 9.10887 9.69650 11.18788 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.023646 B = 0.006311 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.823927 B = 4435.461721 C = 4958.333294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.203 4.203 3 C 0.241 3.759 4 O -0.549 6.549 5 C -0.097 4.097 6 C 0.058 3.942 7 N -0.529 5.529 8 C 0.062 3.938 9 C -0.081 4.081 10 H 0.063 0.937 11 C -0.133 4.133 12 C -0.003 4.003 13 C -0.513 4.513 14 H 0.069 0.931 15 C 0.065 3.935 16 N -0.909 5.909 17 Si 0.875 3.125 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.260 1.260 21 C 0.052 3.948 22 C -0.135 4.135 23 H 0.217 0.783 24 H 0.378 0.622 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.031 0.969 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.020 0.980 31 H 0.046 0.954 32 H 0.030 0.970 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.007 0.993 36 H 0.260 0.740 37 H 0.101 0.899 38 H 0.028 0.972 39 H 0.070 0.930 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.859 6.159 12.793 18.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.203 4.203 3 C 0.200 3.800 4 O -0.355 6.355 5 C -0.134 4.134 6 C -0.070 4.070 7 N -0.253 5.253 8 C -0.065 4.065 9 C -0.100 4.100 10 H 0.082 0.918 11 C -0.190 4.190 12 C -0.040 4.040 13 C -0.551 4.551 14 H 0.087 0.913 15 C -0.135 4.135 16 N -0.549 5.549 17 Si 0.703 3.297 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.184 1.184 21 C -0.075 4.075 22 C -0.173 4.173 23 H 0.234 0.766 24 H 0.226 0.774 25 H 0.090 0.910 26 H 0.108 0.892 27 H 0.049 0.951 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.025 0.975 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.046 0.954 39 H 0.088 0.912 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.908 5.841 13.165 18.068 hybrid contribution -0.652 0.361 0.110 0.754 sum -11.561 6.202 13.275 18.664 Atomic orbital electron populations 1.24990 0.95909 0.99220 1.00999 1.23984 0.95153 1.01105 1.00051 1.18246 0.81513 0.85087 0.95151 1.86603 1.75939 1.15649 1.57297 1.21506 1.02811 0.91561 0.97554 1.22032 0.97090 0.96612 0.91304 1.61916 1.59224 1.03101 1.01103 1.22272 0.97052 0.89086 0.98082 1.21178 0.99782 0.96992 0.92059 0.91843 1.21690 0.98072 0.96760 1.02520 1.19558 0.90211 0.97066 0.97158 1.21221 0.93451 1.48946 0.91515 0.91256 1.25000 0.98519 0.94873 0.95118 1.69920 1.16125 1.51535 1.17305 0.86834 0.81115 0.78384 0.83398 1.20636 1.21769 1.18377 1.22156 0.96667 0.90113 0.98600 1.22273 1.03324 0.97765 0.93976 0.76643 0.77393 0.90961 0.89198 0.95101 0.90193 0.91085 0.96143 0.93456 0.95089 0.91507 0.94993 0.97506 0.92989 0.88120 0.95356 0.91153 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 19.25 29.55 0.57 -1.53 16 2 C -0.20 -2.53 9.86 -37.12 -0.37 -2.90 16 3 C 0.24 3.10 1.09 -93.28 -0.10 3.00 16 4 O -0.55 -6.73 12.96 -35.23 -0.46 -7.19 16 5 C -0.10 -1.25 5.23 -26.66 -0.14 -1.39 16 6 C 0.06 0.78 5.25 -3.84 -0.02 0.76 16 7 N -0.53 -8.45 3.99 -234.67 -0.94 -9.38 16 8 C 0.06 1.02 4.55 -3.82 -0.02 1.00 16 9 C -0.08 -1.57 1.85 -90.62 -0.17 -1.74 16 10 H 0.06 1.25 6.08 -51.93 -0.32 0.94 16 11 C -0.13 -2.42 8.91 37.16 0.33 -2.09 16 12 C 0.00 -0.06 3.36 -27.89 -0.09 -0.15 16 13 C -0.51 -14.40 9.03 -34.44 -0.31 -14.71 16 14 H 0.07 2.09 7.31 -52.48 -0.38 1.70 16 15 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 16 N -0.91 -28.22 13.96 55.43 0.77 -27.45 16 17 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 18 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 21 C 0.05 0.81 4.78 -3.83 -0.02 0.79 16 22 C -0.14 -1.86 5.20 -26.65 -0.14 -2.00 16 23 H 0.22 1.54 7.80 -54.08 -0.42 1.12 16 24 H 0.38 3.23 9.03 45.56 0.41 3.64 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.03 0.41 7.32 -51.93 -0.38 0.03 16 28 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 1.35 7.12 -51.93 -0.37 0.98 16 34 H 0.03 0.78 6.52 -51.93 -0.34 0.44 16 35 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.10 1.76 5.74 -51.93 -0.30 1.46 16 38 H 0.03 0.42 7.32 -51.93 -0.38 0.04 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 316.33 15.07 4.77 4.77 Total: -1.00 -31.86 316.33 -6.93 -38.80 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.84 Total: 2.14 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -0.57 Total: -19.17 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.16 Total: -36.83 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.46 Total: -7.19 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.86 -6.93 -38.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895385058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.885 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds