Wall clock time and date at job start Sun Mar 29 2020 23:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42903 * 109.52306 * 200.36644 * 3 2 1 5 5 C 1.53114 * 109.52253 * 320.49986 * 3 2 1 6 6 C 1.53031 * 109.28184 * 62.31216 * 5 3 2 7 7 N 1.46848 * 109.52337 * 59.17971 * 6 5 3 8 8 C 1.46901 * 110.99899 * 174.16040 * 7 6 5 9 9 C 1.53003 * 109.46955 * 176.29777 * 8 7 6 10 10 H 1.09004 * 109.47177 * 301.81663 * 9 8 7 11 11 C 1.53001 * 109.46961 * 181.81990 * 9 8 7 12 12 C 1.52995 * 109.47573 * 61.81752 * 9 8 7 13 13 C 1.50695 * 109.47689 * 185.00100 * 12 9 8 14 14 H 1.08006 * 119.99388 * 0.02562 * 13 12 9 15 15 C 1.37876 * 120.00452 * 180.02562 * 13 12 9 16 16 N 1.31507 * 120.00295 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99737 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46934 * 90.00343 * 17 15 13 19 19 H 1.48501 * 109.46979 * 209.99976 * 17 15 13 20 20 H 1.48492 * 109.47068 * 330.00115 * 17 15 13 21 21 C 1.46846 * 111.19520 * 298.25670 * 7 6 5 22 22 C 1.53037 * 109.52276 * 61.74698 * 21 7 6 23 23 H 4.38558 * 5.44009 * 180.02562 * 4 1 2 24 24 H 0.96697 * 114.00001 * 300.13394 * 4 3 2 25 25 H 1.08997 * 109.50478 * 302.36696 * 5 3 2 26 26 H 1.08999 * 109.53182 * 182.27806 * 5 3 2 27 27 H 1.08992 * 109.46291 * 299.16376 * 6 5 3 28 28 H 1.09000 * 109.45412 * 179.18944 * 6 5 3 29 29 H 1.09002 * 109.47016 * 296.29134 * 8 7 6 30 30 H 1.09004 * 109.47235 * 56.29621 * 8 7 6 31 31 H 1.08998 * 109.47038 * 294.55885 * 11 9 8 32 32 H 1.08997 * 109.47187 * 54.56226 * 11 9 8 33 33 H 1.09003 * 109.46933 * 174.56083 * 11 9 8 34 34 H 1.09003 * 109.47262 * 305.00287 * 12 9 8 35 35 H 1.09003 * 109.46891 * 64.99695 * 12 9 8 36 36 H 0.97000 * 120.00606 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.45668 * 181.75562 * 21 7 6 38 38 H 1.09000 * 109.46477 * 301.72632 * 21 7 6 39 39 H 1.08999 * 109.50355 * 180.88079 * 22 21 7 40 40 H 1.08996 * 109.53907 * 60.77954 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 1.2635 0.4687 5 6 3.1582 -1.1127 0.9179 6 6 2.6950 -2.4670 0.3766 7 7 3.2122 -2.6541 -0.9850 8 6 2.9039 -4.0007 -1.4848 9 6 3.3754 -4.1267 -2.9349 10 1 2.8882 -3.3644 -3.5429 11 6 3.0138 -5.5138 -3.4700 12 6 4.8921 -3.9358 -2.9966 13 6 5.3407 -3.9375 -4.4352 14 1 4.6162 -4.0618 -5.2265 15 6 6.6758 -3.7803 -4.7414 16 7 7.0671 -3.7812 -5.9969 17 14 7.9287 -3.5645 -3.3727 18 1 8.4372 -4.8950 -2.9529 19 1 9.0587 -2.7347 -3.8624 20 1 7.2862 -2.8923 -2.2150 21 6 2.6958 -1.6240 -1.8953 22 6 3.1591 -0.2444 -1.4218 23 1 -1.0503 -0.0004 0.0000 24 1 2.8361 2.0158 -0.0669 25 1 2.7613 -0.9673 1.9226 26 1 4.2474 -1.0865 0.9497 27 1 1.6057 -2.4977 0.3587 28 1 3.0703 -3.2627 1.0201 29 1 3.4154 -4.7420 -0.8708 30 1 1.8280 -4.1687 -1.4366 31 1 3.5758 -6.2716 -2.9242 32 1 1.9460 -5.6874 -3.3371 33 1 3.2620 -5.5704 -4.5299 34 1 5.1578 -2.9851 -2.5343 35 1 5.3827 -4.7493 -2.4621 36 1 8.0064 -3.6702 -6.2123 37 1 3.0716 -1.8075 -2.9019 38 1 1.6064 -1.6586 -1.9025 39 1 2.7627 0.5213 -2.0886 40 1 4.2483 -0.2037 -1.4276 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895385058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:13 Heat of formation + Delta-G solvation = -24.273169 kcal Electronic energy + Delta-G solvation = -19178.811071 eV Core-core repulsion = 16379.737020 eV Total energy + Delta-G solvation = -2799.074051 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.87825 -38.44078 -36.29303 -34.46445 -33.66123 -32.01219 -31.85682 -29.56482 -27.02497 -25.06448 -24.27910 -23.66880 -21.91911 -20.31224 -19.22051 -18.86663 -17.78885 -16.96808 -16.51500 -16.03863 -15.80011 -15.67430 -15.17610 -15.12156 -14.61292 -14.29381 -13.75076 -13.57909 -13.27790 -13.18993 -12.85626 -12.75179 -12.56333 -12.31191 -12.25991 -12.03609 -11.94516 -11.67177 -11.54695 -11.53520 -11.38494 -11.10592 -10.99984 -10.69821 -10.67011 -9.14675 -8.21851 -6.21963 1.37655 1.40474 1.54560 1.72597 1.79321 2.42075 2.94168 3.15065 3.24194 3.29258 3.75048 3.78372 4.04033 4.19488 4.26822 4.37575 4.45882 4.48517 4.53211 4.72947 4.73510 4.82235 4.85376 4.88508 4.92993 4.96242 5.09594 5.11219 5.16901 5.26780 5.37745 5.48578 5.63941 5.74852 5.80412 6.17472 6.26137 6.40137 6.58672 6.67858 6.86034 7.41741 8.94915 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.023646 B = 0.006311 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.823927 B = 4435.461721 C = 4958.333294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.243 4.243 3 C 0.245 3.755 4 O -0.560 6.560 5 C -0.097 4.097 6 C 0.062 3.938 7 N -0.547 5.547 8 C 0.072 3.928 9 C -0.079 4.079 10 H 0.053 0.947 11 C -0.128 4.128 12 C 0.006 3.994 13 C -0.513 4.513 14 H 0.033 0.967 15 C 0.004 3.996 16 N -0.956 5.956 17 Si 0.941 3.059 18 H -0.271 1.271 19 H -0.289 1.289 20 H -0.247 1.247 21 C 0.058 3.942 22 C -0.133 4.133 23 H 0.249 0.751 24 H 0.393 0.607 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.037 0.963 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.026 0.974 35 H 0.006 0.994 36 H 0.262 0.738 37 H 0.072 0.928 38 H 0.035 0.965 39 H 0.082 0.918 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.192 6.366 15.323 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.244 4.244 3 C 0.205 3.795 4 O -0.368 6.368 5 C -0.135 4.135 6 C -0.065 4.065 7 N -0.272 5.272 8 C -0.056 4.056 9 C -0.097 4.097 10 H 0.072 0.928 11 C -0.186 4.186 12 C -0.031 4.031 13 C -0.551 4.551 14 H 0.052 0.948 15 C -0.192 4.192 16 N -0.598 5.598 17 Si 0.766 3.234 18 H -0.197 1.197 19 H -0.215 1.215 20 H -0.170 1.170 21 C -0.070 4.070 22 C -0.171 4.171 23 H 0.265 0.735 24 H 0.243 0.757 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.055 0.945 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.025 0.975 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.100 0.900 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.260 6.056 15.705 20.824 hybrid contribution -0.338 0.325 -0.751 0.885 sum -12.598 6.382 14.954 20.568 Atomic orbital electron populations 1.25807 0.96693 0.97275 0.98935 1.24016 0.95432 1.02961 1.01952 1.18034 0.82228 0.85255 0.94002 1.86563 1.76275 1.16117 1.57808 1.21504 1.02120 0.91584 0.98276 1.22051 0.97388 0.97250 0.89826 1.61893 1.60140 1.02854 1.02350 1.22110 0.98188 0.89725 0.95552 1.21074 0.96687 0.97331 0.94635 0.92837 1.21621 1.00316 0.96251 1.00405 1.19434 0.93377 0.96546 0.93765 1.21552 0.92831 1.47564 0.93157 0.94836 1.25893 1.00880 0.94920 0.97459 1.70068 1.16685 1.53432 1.19624 0.85777 0.78372 0.78747 0.80512 1.19654 1.21545 1.17013 1.22022 0.96849 0.90916 0.97193 1.22223 1.02164 0.97260 0.95439 0.73466 0.75719 0.89749 0.90374 0.94469 0.88979 0.90357 0.94109 0.92997 0.91796 0.94623 0.95523 0.97519 0.92906 0.91006 0.94676 0.89983 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 19.25 74.32 1.43 -1.66 16 2 C -0.24 -5.47 9.86 31.12 0.31 -5.17 16 3 C 0.25 5.93 1.09 -12.52 -0.01 5.92 16 4 O -0.56 -12.92 12.96 -148.98 -1.93 -14.85 16 5 C -0.10 -2.34 5.23 30.64 0.16 -2.18 16 6 C 0.06 1.52 5.25 86.32 0.45 1.97 16 7 N -0.55 -16.54 3.99 -896.36 -3.58 -20.12 16 8 C 0.07 2.17 4.55 86.30 0.39 2.57 16 9 C -0.08 -2.99 1.85 -10.79 -0.02 -3.01 16 10 H 0.05 2.14 6.08 -2.38 -0.01 2.12 16 11 C -0.13 -4.57 8.91 71.98 0.64 -3.93 16 12 C 0.01 0.29 3.36 29.84 0.10 0.39 16 13 C -0.51 -29.56 9.03 25.60 0.23 -29.32 16 14 H 0.03 2.12 7.31 -2.91 -0.02 2.09 16 15 C 0.00 0.25 5.47 84.66 0.46 0.71 16 16 N -0.96 -61.04 13.96 21.45 0.30 -60.74 16 17 Si 0.94 45.97 27.47 68.60 1.88 47.85 16 18 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 19 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 20 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 21 C 0.06 1.75 4.78 86.33 0.41 2.16 16 22 C -0.13 -3.57 5.20 30.65 0.16 -3.41 16 23 H 0.25 2.44 7.80 -4.40 -0.03 2.41 16 24 H 0.39 6.14 9.03 -74.06 -0.67 5.48 16 25 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 27 H 0.04 0.87 7.32 -2.39 -0.02 0.85 16 28 H 0.09 2.00 8.12 -2.39 -0.02 1.98 16 29 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.03 1.46 7.12 -2.39 -0.02 1.45 16 34 H 0.03 1.28 6.52 -2.39 -0.02 1.26 16 35 H 0.01 0.31 7.57 -2.39 -0.02 0.29 16 36 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 37 H 0.07 2.55 5.74 -2.39 -0.01 2.54 16 38 H 0.04 1.00 7.32 -2.39 -0.02 0.98 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -69.29 316.33 1.67 -67.62 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.28 Total: 15.21 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 4.72 Total: -34.96 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -3.28 Total: -80.86 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -1.93 Total: -14.85 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.88 Total: 47.85 kcal Total: -69.29 1.67 -67.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895385058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.343 kcal (2) G-P(sol) polarization free energy of solvation -69.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds