Wall clock time and date at job start Sun Mar 29 2020 23:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.51268 * 120.85332 * 2 1 4 4 C 1.53231 * 108.53566 * 231.32079 * 3 2 1 5 5 C 1.52955 * 109.40673 * 305.37195 * 4 3 2 6 6 C 1.50694 * 109.41470 * 183.70494 * 5 4 3 7 7 O 1.21279 * 119.99952 * 349.13132 * 6 5 4 8 8 N 1.34778 * 120.00050 * 169.13451 * 6 5 4 9 9 C 1.46498 * 119.99855 * 185.24305 * 8 6 5 10 10 C 1.46502 * 120.00221 * 5.24487 * 8 6 5 11 11 H 1.09003 * 109.46683 * 6.01591 * 10 8 6 12 12 C 1.53002 * 109.47162 * 126.01287 * 10 8 6 13 13 C 1.50696 * 109.47230 * 246.01708 * 10 8 6 14 14 H 1.07995 * 119.99702 * 333.74795 * 13 10 8 15 15 C 1.37877 * 120.00064 * 153.75215 * 13 10 8 16 16 N 1.31517 * 119.99883 * 174.33993 * 15 13 10 17 17 Si 1.86799 * 120.00106 * 354.33482 * 15 13 10 18 18 H 1.48498 * 109.47085 * 275.27991 * 17 15 13 19 19 H 1.48507 * 109.46857 * 35.27947 * 17 15 13 20 20 H 1.48495 * 109.47161 * 155.27844 * 17 15 13 21 21 C 1.52968 * 109.81787 * 63.59908 * 5 4 3 22 22 C 1.51272 * 120.84531 * 179.97438 * 2 1 3 23 23 H 1.08003 * 119.99596 * 0.02562 * 1 2 3 24 24 H 1.07989 * 120.00602 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.62316 * 111.60790 * 3 2 1 26 26 H 1.08999 * 109.62735 * 351.03705 * 3 2 1 27 27 H 1.09005 * 109.48038 * 185.39250 * 4 3 2 28 28 H 1.08996 * 109.48236 * 65.35542 * 4 3 2 29 29 H 1.09004 * 109.41674 * 303.57032 * 5 4 3 30 30 H 1.09003 * 109.47560 * 275.32774 * 9 8 6 31 31 H 1.09001 * 109.47393 * 35.33235 * 9 8 6 32 32 H 1.09003 * 109.47155 * 155.33166 * 9 8 6 33 33 H 1.08995 * 109.46976 * 55.42636 * 12 10 8 34 34 H 1.09005 * 109.46970 * 175.42833 * 12 10 8 35 35 H 1.09006 * 109.47108 * 295.42708 * 12 10 8 36 36 H 0.96997 * 120.00090 * 180.02562 * 16 15 13 37 37 H 1.08996 * 109.47910 * 56.37565 * 21 5 4 38 38 H 1.08993 * 109.48176 * 176.42496 * 21 5 4 39 39 H 1.08995 * 109.62556 * 248.39408 * 22 2 1 40 40 H 1.08998 * 109.62707 * 8.77118 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0858 1.2986 0.0000 4 6 3.1151 1.2512 -1.1342 5 6 3.9812 -0.0004 -0.9824 6 6 5.0512 -0.0007 -2.0435 7 8 4.9997 0.7955 -2.9569 8 7 6.0655 -0.8858 -1.9774 9 6 7.1656 -0.8125 -2.9421 10 6 6.0679 -1.9212 -0.9410 11 1 5.1279 -1.8862 -0.3903 12 6 6.2257 -3.2959 -1.5938 13 6 7.2145 -1.6805 0.0069 14 1 8.0942 -1.1539 -0.3325 15 6 7.1406 -2.1328 1.3072 16 7 8.1825 -2.0223 2.1021 17 14 5.5604 -2.9024 1.9401 18 1 4.6402 -1.8331 2.4037 19 1 4.9134 -3.6732 0.8480 20 1 5.8716 -3.8126 3.0713 21 6 3.1149 -1.2520 -1.1336 22 6 2.0856 -1.2988 0.0006 23 1 -0.5400 0.9354 -0.0004 24 1 -0.5400 -0.9352 -0.0004 25 1 2.5981 1.4190 0.9546 26 1 1.4030 2.1330 -0.1599 27 1 3.7470 2.1382 -1.0890 28 1 2.5981 1.2214 -2.0932 29 1 4.4477 -0.0009 0.0027 30 1 6.8890 -1.3481 -3.8502 31 1 7.3685 0.2310 -3.1833 32 1 8.0581 -1.2657 -2.5106 33 1 7.1246 -3.3043 -2.2102 34 1 6.3090 -4.0585 -0.8193 35 1 5.3559 -3.5043 -2.2168 36 1 8.1306 -2.3408 3.0168 37 1 2.5979 -1.2225 -2.0927 38 1 3.7467 -2.1390 -1.0880 39 1 2.5979 -1.4188 0.9551 40 1 1.4022 -2.1334 -0.1556 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896884297.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:26 Heat of formation + Delta-G solvation = -33.239104 kcal Electronic energy + Delta-G solvation = -19802.175279 eV Core-core repulsion = 17002.712436 eV Total energy + Delta-G solvation = -2799.462843 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.89606 -37.53724 -35.74561 -32.67515 -32.55729 -30.93455 -30.01290 -27.52577 -25.52000 -25.18038 -22.83350 -21.79940 -20.78630 -18.57454 -17.95125 -17.22982 -16.37527 -15.34663 -14.90883 -14.74222 -14.34789 -14.18428 -13.59356 -13.31477 -13.28749 -12.68300 -12.66667 -12.30878 -12.08620 -12.03901 -11.65798 -11.47965 -11.29481 -11.23565 -11.05545 -10.92216 -10.76973 -10.40522 -10.30087 -10.03249 -9.97018 -9.41626 -9.09971 -8.89509 -8.66652 -7.70313 -6.27156 -4.28732 2.32558 3.10764 3.18285 3.22205 3.32054 3.88198 4.21019 4.73475 4.85822 4.99796 5.15126 5.19756 5.32419 5.45666 5.55777 5.60132 5.74626 5.88153 5.92480 5.97212 6.01167 6.04277 6.11701 6.17914 6.26243 6.28823 6.33170 6.37125 6.43088 6.47192 6.57070 6.70628 6.75996 6.91375 6.97044 7.35320 7.55065 8.06707 8.46459 8.77647 8.92669 9.33194 10.85566 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.009906 C = 0.007512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.357674 B = 2825.840111 C = 3726.653245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 C -0.089 4.089 4 C -0.091 4.091 5 C -0.108 4.108 6 C 0.517 3.483 7 O -0.571 6.571 8 N -0.588 5.588 9 C 0.095 3.905 10 C 0.215 3.785 11 H 0.061 0.939 12 C -0.154 4.154 13 C -0.530 4.530 14 H 0.080 0.920 15 C 0.079 3.921 16 N -0.888 5.888 17 Si 0.858 3.142 18 H -0.268 1.268 19 H -0.258 1.258 20 H -0.284 1.284 21 C -0.116 4.116 22 C -0.090 4.090 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.040 0.960 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.027 0.973 36 H 0.267 0.733 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.393 0.698 -3.500 11.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.108 4.108 3 C -0.126 4.126 4 C -0.129 4.129 5 C -0.129 4.129 6 C 0.304 3.696 7 O -0.452 6.452 8 N -0.318 5.318 9 C -0.048 4.048 10 C 0.114 3.886 11 H 0.078 0.922 12 C -0.212 4.212 13 C -0.568 4.568 14 H 0.098 0.902 15 C -0.125 4.125 16 N -0.525 5.525 17 Si 0.684 3.316 18 H -0.194 1.194 19 H -0.183 1.183 20 H -0.210 1.210 21 C -0.154 4.154 22 C -0.127 4.127 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.301 1.042 -3.781 11.962 hybrid contribution -0.582 -0.569 0.649 1.041 sum -11.882 0.473 -3.132 12.297 Atomic orbital electron populations 1.23532 0.94877 1.01483 1.04653 1.22038 0.95036 0.96038 0.97695 1.20885 0.97615 0.94502 0.99605 1.21308 0.96370 0.96882 0.98360 1.21274 0.95018 0.96689 0.99892 1.20441 0.82730 0.80312 0.86067 1.90585 1.77572 1.40939 1.36106 1.48118 1.20844 1.31192 1.31611 1.21409 0.90467 1.01501 0.91435 1.19585 0.98919 0.83897 0.86231 0.92151 1.22329 0.99685 0.98981 1.00226 1.21191 1.02741 1.38138 0.94767 0.90238 1.24921 0.96062 0.94962 0.96525 1.69879 1.29200 1.46191 1.07241 0.87191 0.84643 0.80282 0.79491 1.19381 1.18257 1.20962 1.21764 0.97103 0.97635 0.98872 1.20879 0.97537 0.94783 0.99519 0.88666 0.88714 0.90681 0.91184 0.91155 0.91252 0.88179 0.94186 0.92284 0.90471 0.92872 0.92224 0.95379 0.92292 0.91422 0.89949 0.90593 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.42 13.99 29.01 0.41 -2.02 16 2 C -0.11 -1.44 5.35 -100.51 -0.54 -1.98 16 3 C -0.09 -1.19 6.03 -27.48 -0.17 -1.35 16 4 C -0.09 -1.43 4.52 -26.63 -0.12 -1.55 16 5 C -0.11 -1.92 1.58 -91.81 -0.14 -2.06 16 6 C 0.52 10.67 6.95 -10.99 -0.08 10.59 16 7 O -0.57 -12.86 15.76 5.56 0.09 -12.77 16 8 N -0.59 -12.28 2.75 -175.26 -0.48 -12.76 16 9 C 0.10 1.80 9.10 59.85 0.54 2.35 16 10 C 0.22 4.65 1.27 -69.08 -0.09 4.57 16 11 H 0.06 1.27 1.67 -51.93 -0.09 1.19 16 12 C -0.15 -3.01 8.73 37.16 0.32 -2.69 16 13 C -0.53 -13.67 8.71 -34.44 -0.30 -13.97 16 14 H 0.08 2.27 7.39 -52.49 -0.39 1.89 16 15 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 16 N -0.89 -25.44 13.96 55.43 0.77 -24.66 16 17 Si 0.86 19.22 26.27 -169.99 -4.47 14.75 16 18 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.26 -5.33 6.26 56.52 0.35 -4.98 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C -0.12 -1.86 4.75 -26.63 -0.13 -1.99 16 22 C -0.09 -1.28 6.03 -27.48 -0.17 -1.45 16 23 H 0.10 0.98 7.92 -52.48 -0.42 0.57 16 24 H 0.09 1.00 7.92 -52.49 -0.42 0.58 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.07 0.81 7.89 -51.93 -0.41 0.40 16 27 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 28 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 29 H 0.10 1.92 7.57 -51.93 -0.39 1.52 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.12 7.67 -51.93 -0.40 0.72 16 32 H 0.08 1.46 6.90 -51.93 -0.36 1.11 16 33 H 0.05 1.00 7.20 -51.93 -0.37 0.63 16 34 H 0.06 1.19 6.94 -51.93 -0.36 0.83 16 35 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 36 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.08 1.40 5.32 -51.93 -0.28 1.12 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.07 0.89 7.89 -51.93 -0.41 0.48 16 LS Contribution 309.18 15.07 4.66 4.66 Total: -1.00 -28.87 309.18 -6.40 -35.27 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.42 Total: 5.07 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -0.55 Total: -9.56 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.29 Total: -37.42 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.47 Total: 14.75 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.87 -6.40 -35.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896884297.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.026 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds