Wall clock time and date at job start Sun Mar 29 2020 23:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 115.54691 * 2 1 4 4 C 1.53004 * 117.49799 * 214.33432 * 2 1 3 5 5 C 1.53002 * 117.49879 * 145.71022 * 2 1 3 6 6 H 1.08995 * 117.49401 * 214.97759 * 5 2 1 7 7 C 1.52995 * 117.49926 * 359.97438 * 5 2 1 8 8 H 1.09005 * 115.54924 * 39.49747 * 7 5 2 9 9 C 1.53002 * 117.49959 * 185.16587 * 7 5 2 10 10 C 1.53000 * 117.49826 * 253.82983 * 7 5 2 11 11 H 1.09001 * 117.49634 * 145.02236 * 10 7 5 12 12 C 1.52997 * 117.50132 * 0.02562 * 10 7 5 13 13 N 1.46490 * 109.47308 * 175.61569 * 12 10 7 14 14 C 1.34777 * 120.00567 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99270 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00436 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.47015 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.47015 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00214 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99883 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99933 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99862 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47075 * 90.00109 * 22 20 18 24 24 H 1.48502 * 109.47125 * 210.00037 * 22 20 18 25 25 H 1.48498 * 109.47467 * 329.99983 * 22 20 18 26 26 H 1.09006 * 109.47319 * 149.32316 * 1 2 3 27 27 H 1.08994 * 109.47187 * 269.32560 * 1 2 3 28 28 H 1.09001 * 109.47128 * 29.32870 * 1 2 3 29 29 H 1.08991 * 117.50051 * 359.97438 * 4 2 1 30 30 H 1.09003 * 117.49930 * 145.02595 * 4 2 1 31 31 H 1.08997 * 117.50372 * 214.97840 * 9 7 5 32 32 H 1.08998 * 117.49578 * 0.02562 * 9 7 5 33 33 H 1.08998 * 109.47183 * 295.62304 * 12 10 7 34 34 H 1.09007 * 109.46674 * 55.61772 * 12 10 7 35 35 H 0.97005 * 120.00027 * 0.02562 * 13 12 10 36 36 H 1.09002 * 109.47131 * 299.99531 * 16 14 13 37 37 H 1.08997 * 109.47454 * 59.99998 * 16 14 13 38 38 H 1.08998 * 109.47447 * 299.99891 * 17 16 14 39 39 H 1.08997 * 109.47509 * 59.99974 * 17 16 14 40 40 H 0.96999 * 120.00004 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9834 0.0000 4 6 2.2364 -1.1207 -0.7655 5 6 2.2364 -1.1213 0.7646 6 1 3.1715 -0.8756 1.2679 7 6 1.3588 -2.1564 1.4711 8 1 0.4673 -2.4672 0.9264 9 6 2.0608 -3.2062 2.3349 10 6 1.2637 -2.0789 2.9962 11 1 0.3098 -2.3392 3.4548 12 6 2.0530 -0.9719 3.6980 13 7 1.7555 -0.9941 5.1322 14 6 2.3407 -0.1020 5.9558 15 8 3.1140 0.7188 5.5094 16 6 2.0351 -0.1252 7.4312 17 6 2.8233 0.9827 8.1328 18 6 2.5172 0.9599 9.6082 19 1 1.8290 0.2287 10.0057 20 6 3.1159 1.8727 10.4506 21 7 3.9535 2.7634 9.9665 22 14 2.7359 1.8449 12.2793 23 1 3.6976 0.9495 12.9711 24 1 2.8542 3.2188 12.8304 25 1 1.3538 1.3444 12.4902 26 1 -0.3634 -0.8839 -0.5243 27 1 -0.3633 -0.0121 1.0275 28 1 -0.3633 0.8959 -0.5034 29 1 1.6112 -1.8582 -1.2687 30 1 3.1716 -0.8747 -1.2686 31 1 1.6310 -4.2075 2.3588 32 1 3.1478 -3.1591 2.4001 33 1 3.1201 -1.1340 3.5456 34 1 1.7695 -0.0046 3.2830 35 1 1.1373 -1.6508 5.4892 36 1 0.9679 0.0362 7.5838 37 1 2.3193 -1.0923 7.8460 38 1 3.8905 0.8219 7.9802 39 1 2.5387 1.9497 7.7180 40 1 4.3744 3.4058 10.5591 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899398458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:41 Heat of formation + Delta-G solvation = -35.261807 kcal Electronic energy + Delta-G solvation = -17744.225375 eV Core-core repulsion = 14944.674821 eV Total energy + Delta-G solvation = -2799.550554 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.81506 -39.83948 -37.17730 -35.57503 -35.00030 -32.97967 -29.40470 -28.85475 -26.90939 -24.67213 -23.53059 -22.37396 -21.95425 -21.12247 -19.68512 -18.75258 -17.49046 -17.27916 -16.66018 -16.65507 -16.37179 -15.75631 -15.07695 -14.63631 -14.61756 -14.16546 -13.97159 -13.80768 -13.72906 -13.26082 -13.23052 -12.80803 -12.48791 -12.39376 -12.31884 -12.12221 -11.91486 -11.76841 -11.63334 -11.31994 -11.30498 -10.81011 -10.64964 -10.56582 -10.19855 -10.00040 -8.17743 -6.32015 1.42330 1.45400 1.56351 1.71721 2.21266 2.44073 2.59610 3.15120 3.18167 3.49300 3.80054 3.85335 3.99490 4.08281 4.24726 4.29376 4.34479 4.36884 4.48008 4.51986 4.56004 4.73583 4.76255 4.91224 4.94836 4.97033 4.99256 5.08979 5.20553 5.22933 5.25146 5.37573 5.44146 5.48024 5.55282 5.63371 5.85798 6.17846 6.63893 6.86651 7.36067 7.38616 8.95092 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.044444 B = 0.003245 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.859503 B = 8627.834463 C = 8873.074520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.161 4.161 3 H 0.092 0.908 4 C -0.160 4.160 5 C -0.138 4.138 6 H 0.086 0.914 7 C -0.100 4.100 8 H 0.124 0.876 9 C -0.163 4.163 10 C -0.162 4.162 11 H 0.131 0.869 12 C 0.155 3.845 13 N -0.715 5.715 14 C 0.508 3.492 15 O -0.593 6.593 16 C -0.119 4.119 17 C 0.041 3.959 18 C -0.543 4.543 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.939 5.939 22 Si 0.976 3.024 23 H -0.271 1.271 24 H -0.286 1.286 25 H -0.254 1.254 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.417 0.583 36 H 0.105 0.895 37 H 0.105 0.895 38 H -0.019 1.019 39 H -0.019 1.019 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.772 -14.266 -19.490 26.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.179 4.179 3 H 0.111 0.889 4 C -0.197 4.197 5 C -0.157 4.157 6 H 0.104 0.896 7 C -0.118 4.118 8 H 0.142 0.858 9 C -0.200 4.200 10 C -0.180 4.180 11 H 0.148 0.852 12 C 0.032 3.968 13 N -0.369 5.369 14 C 0.297 3.703 15 O -0.474 6.474 16 C -0.158 4.158 17 C 0.003 3.997 18 C -0.581 4.581 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.579 5.579 22 Si 0.799 3.201 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.178 1.178 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.114 0.886 31 H 0.136 0.864 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.255 0.745 36 H 0.124 0.876 37 H 0.124 0.876 38 H -0.001 1.001 39 H 0.000 1.000 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.130 -13.558 -19.784 25.663 hybrid contribution 0.311 0.452 0.983 1.126 sum -8.819 -13.106 -18.801 24.556 Atomic orbital electron populations 1.21321 0.91868 1.02428 1.01847 1.22428 0.96350 0.94183 1.04928 0.88941 1.23162 1.02698 1.01002 0.92808 1.21839 0.99907 0.99524 0.94387 0.89556 1.21798 1.00723 0.98577 0.90718 0.85795 1.23237 0.99150 0.95035 1.02537 1.22454 1.01601 0.98623 0.95315 0.85159 1.20747 0.98256 0.98196 0.79636 1.45908 1.47834 1.35388 1.07776 1.21393 0.79132 0.79703 0.90116 1.90651 1.37785 1.40163 1.78758 1.21636 1.03048 1.02222 0.88932 1.18694 0.93813 0.92728 0.94418 1.21726 1.26664 1.16444 0.93254 0.90492 1.26172 0.94741 0.94868 1.04824 1.70185 1.30656 1.19635 1.37393 0.85294 0.79404 0.77306 0.78069 1.19683 1.21202 1.17810 0.91334 0.92624 0.92060 0.87353 0.88634 0.86446 0.89482 0.93505 0.93124 0.74534 0.87638 0.87649 1.00067 1.00034 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 9.07 71.98 0.65 -1.05 16 2 C -0.16 -2.76 6.41 -10.79 -0.07 -2.83 16 3 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 4 C -0.16 -2.32 9.90 30.60 0.30 -2.02 16 5 C -0.14 -2.46 5.02 -10.79 -0.05 -2.52 16 6 H 0.09 1.86 7.53 -2.39 -0.02 1.85 16 7 C -0.10 -1.48 5.00 -10.79 -0.05 -1.53 16 8 H 0.12 1.45 7.55 -2.38 -0.02 1.43 16 9 C -0.16 -2.35 9.90 30.62 0.30 -2.05 16 10 C -0.16 -2.70 5.84 -10.77 -0.06 -2.76 16 11 H 0.13 1.69 8.05 -2.39 -0.02 1.67 16 12 C 0.16 4.00 4.83 86.38 0.42 4.42 16 13 N -0.72 -19.94 5.56 -463.08 -2.57 -22.51 16 14 C 0.51 20.37 7.83 87.66 0.69 21.06 16 15 O -0.59 -30.41 15.98 -3.04 -0.05 -30.46 16 16 C -0.12 -4.85 5.64 29.85 0.17 -4.69 16 17 C 0.04 2.34 4.26 29.85 0.13 2.47 16 18 C -0.54 -31.32 9.11 25.60 0.23 -31.09 16 19 H 0.08 4.02 7.74 -2.91 -0.02 3.99 16 20 C -0.01 -0.52 5.46 84.66 0.46 -0.06 16 21 N -0.94 -60.40 13.29 21.45 0.28 -60.12 16 22 Si 0.98 44.68 29.54 68.60 2.03 46.71 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 25 H -0.25 -10.77 7.11 99.48 0.71 -10.06 16 26 H 0.07 0.78 7.67 -2.38 -0.02 0.77 16 27 H 0.05 0.88 8.03 -2.39 -0.02 0.86 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.11 1.25 8.03 -2.39 -0.02 1.24 16 30 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.46 8.04 -2.39 -0.02 1.44 16 33 H 0.05 1.37 7.64 -2.39 -0.02 1.35 16 34 H 0.05 1.50 8.05 -2.38 -0.02 1.48 16 35 H 0.42 8.27 8.41 -92.70 -0.78 7.49 16 36 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 37 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 38 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 39 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 40 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -76.98 334.03 3.03 -73.95 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.22 Total: 15.07 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 3.11 Total: -22.64 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -2.29 Total: -82.63 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.05 Total: -30.46 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -76.98 3.03 -73.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899398458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.688 kcal (2) G-P(sol) polarization free energy of solvation -76.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds