Wall clock time and date at job start Sun Mar 29 2020 23:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 115.54585 * 2 1 4 4 C 1.52997 * 117.50041 * 214.33169 * 2 1 3 5 5 C 1.52995 * 117.50008 * 145.66966 * 2 1 3 6 6 H 1.08999 * 117.50112 * 214.97955 * 5 2 1 7 7 C 1.53000 * 117.49836 * 0.02562 * 5 2 1 8 8 H 1.09003 * 115.54669 * 34.33256 * 7 5 2 9 9 C 1.52996 * 117.50055 * 248.62229 * 7 5 2 10 10 C 1.52999 * 117.49916 * 179.97438 * 7 5 2 11 11 H 1.09002 * 117.49912 * 214.99913 * 10 7 5 12 12 C 1.52996 * 117.50073 * 0.02562 * 10 7 5 13 13 N 1.46497 * 109.47316 * 184.99834 * 12 10 7 14 14 C 1.34775 * 120.00281 * 179.97438 * 13 12 10 15 15 O 1.21283 * 119.99686 * 359.97438 * 14 13 12 16 16 C 1.50695 * 120.00246 * 179.97438 * 14 13 12 17 17 C 1.53006 * 109.46969 * 179.97438 * 16 14 13 18 18 C 1.50708 * 109.46799 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99971 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99570 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00615 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47276 * 60.00266 * 22 20 18 24 24 H 1.48506 * 109.47164 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47291 * 300.00129 * 22 20 18 26 26 H 1.09001 * 109.47002 * 154.41394 * 1 2 3 27 27 H 1.08993 * 109.46955 * 274.41831 * 1 2 3 28 28 H 1.09000 * 109.47050 * 34.41660 * 1 2 3 29 29 H 1.09005 * 117.49810 * 359.97438 * 4 2 1 30 30 H 1.08998 * 117.49639 * 145.01797 * 4 2 1 31 31 H 1.08994 * 117.50156 * 0.02562 * 9 7 5 32 32 H 1.09007 * 117.49824 * 145.02199 * 9 7 5 33 33 H 1.09003 * 109.46663 * 304.99315 * 12 10 7 34 34 H 1.08997 * 109.47164 * 64.99288 * 12 10 7 35 35 H 0.96999 * 119.99749 * 359.97438 * 13 12 10 36 36 H 1.09003 * 109.46972 * 299.99647 * 16 14 13 37 37 H 1.08997 * 109.47343 * 59.99919 * 16 14 13 38 38 H 1.09003 * 109.47001 * 299.99648 * 17 16 14 39 39 H 1.08997 * 109.47139 * 59.99813 * 17 16 14 40 40 H 0.96999 * 120.00609 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1207 -0.7654 5 6 2.2365 -1.1207 0.7653 6 1 3.1716 -0.8747 1.2685 7 6 1.3589 -2.1560 1.4716 8 1 0.4243 -2.4022 0.9677 9 6 1.3584 -2.1558 3.0016 10 6 2.0654 -3.2770 2.2365 11 1 1.5952 -4.2605 2.2361 12 6 3.5953 -3.2767 2.2371 13 7 4.0837 -4.4811 2.9130 14 6 5.4088 -4.6959 3.0336 15 8 6.1969 -3.8922 2.5820 16 6 5.9111 -5.9346 3.7294 17 6 7.4412 -5.9349 3.7287 18 6 7.9436 -7.1740 4.4241 19 1 7.2418 -7.8894 4.8266 20 6 9.2991 -7.3941 4.5463 21 7 10.1538 -6.5227 4.0566 22 14 9.9219 -8.9297 5.4088 23 1 9.4258 -10.1338 4.6954 24 1 11.4069 -8.9300 5.4080 25 1 9.4281 -8.9455 6.8092 26 1 -0.3633 -0.9269 -0.4438 27 1 -0.3633 0.0792 1.0246 28 1 -0.3633 0.8478 -0.5808 29 1 1.6113 -1.8583 -1.2686 30 1 3.1716 -0.8746 -1.2686 31 1 1.9829 -1.4179 3.5050 32 1 0.4231 -2.4018 3.5046 33 1 3.9590 -3.2640 1.2096 34 1 3.9583 -2.3930 2.7619 35 1 3.4534 -5.1241 3.2739 36 1 5.5479 -5.9466 4.7571 37 1 5.5478 -6.8185 3.2053 38 1 7.8041 -5.9231 2.7009 39 1 7.8049 -5.0510 4.2526 40 1 11.1074 -6.6774 4.1429 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899398459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:43 Heat of formation + Delta-G solvation = -14.182487 kcal Electronic energy + Delta-G solvation = -17630.833792 eV Core-core repulsion = 14832.197305 eV Total energy + Delta-G solvation = -2798.636486 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.60622 -38.72856 -36.35441 -33.71542 -33.39961 -30.95756 -28.78785 -27.40298 -25.11735 -23.91494 -21.96463 -21.51903 -20.99031 -19.60560 -18.82310 -16.82730 -16.49540 -15.80631 -15.43774 -15.14903 -14.70813 -14.36138 -14.13065 -13.52952 -13.26060 -13.12040 -12.91095 -12.72268 -12.15187 -12.02094 -11.72747 -11.60117 -11.41352 -11.12981 -11.08290 -10.89142 -10.59733 -10.53822 -9.94419 -9.91481 -9.63641 -9.59073 -9.13833 -8.95171 -8.68085 -8.29046 -5.93328 -3.97773 3.16544 3.32523 3.36200 3.40571 3.42303 3.62922 3.89844 4.19633 4.48484 4.50490 4.59640 4.71883 4.93494 5.01339 5.03908 5.10565 5.13274 5.41309 5.47642 5.52062 5.53392 5.59201 5.62888 5.74650 5.76488 5.84755 5.90656 6.02540 6.08071 6.09908 6.27603 6.29133 6.80925 6.94016 7.77099 7.90156 7.96221 8.10605 8.41920 8.84573 9.10960 9.65504 11.17632 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.056999 B = 0.003065 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.114775 B = 9132.357918 C = 9444.900069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.153 4.153 3 H 0.103 0.897 4 C -0.172 4.172 5 C -0.123 4.123 6 H 0.107 0.893 7 C -0.109 4.109 8 H 0.106 0.894 9 C -0.169 4.169 10 C -0.159 4.159 11 H 0.110 0.890 12 C 0.152 3.848 13 N -0.743 5.743 14 C 0.508 3.492 15 O -0.537 6.537 16 C -0.130 4.130 17 C 0.037 3.963 18 C -0.527 4.527 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.397 0.603 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.960 9.893 -5.938 24.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.171 4.171 3 H 0.121 0.879 4 C -0.209 4.209 5 C -0.141 4.141 6 H 0.125 0.875 7 C -0.128 4.128 8 H 0.124 0.876 9 C -0.206 4.206 10 C -0.177 4.177 11 H 0.128 0.872 12 C 0.029 3.971 13 N -0.397 5.397 14 C 0.297 3.703 15 O -0.412 6.412 16 C -0.170 4.170 17 C -0.001 4.001 18 C -0.566 4.566 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.230 0.770 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.164 10.529 -6.294 24.462 hybrid contribution 0.073 -1.136 0.626 1.299 sum -21.091 9.393 -5.668 23.773 Atomic orbital electron populations 1.21330 0.92946 1.01617 1.01806 1.22357 0.95386 0.94420 1.04918 0.87936 1.23115 1.02629 1.01243 0.93900 1.21852 1.00108 0.98477 0.93694 0.87474 1.21760 0.99591 0.97816 0.93611 0.87590 1.23151 1.02506 1.01264 0.93680 1.22560 0.94569 0.95054 1.05545 0.87204 1.20749 0.90131 0.88481 0.97788 1.46204 1.07815 1.24552 1.61128 1.21555 0.81013 0.88795 0.78972 1.90665 1.55234 1.47322 1.47995 1.21858 1.02536 0.93103 0.99486 1.18895 0.85861 0.97152 0.98153 1.21198 0.91713 1.06420 1.37228 0.92662 1.25029 0.97057 0.96595 0.95733 1.69988 1.02076 1.35332 1.45499 0.86649 0.77654 0.83497 0.80097 1.20257 1.21298 1.20263 0.92643 0.92102 0.92468 0.88754 0.88686 0.88453 0.88655 0.91402 0.91906 0.76963 0.90288 0.90293 0.95839 0.95846 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.05 37.16 0.34 -0.47 16 2 C -0.15 -1.22 6.40 -90.62 -0.58 -1.80 16 3 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.17 -1.49 9.90 -26.70 -0.26 -1.75 16 5 C -0.12 -1.13 5.10 -90.58 -0.46 -1.59 16 6 H 0.11 1.10 7.35 -51.93 -0.38 0.72 16 7 C -0.11 -0.93 5.18 -90.62 -0.47 -1.40 16 8 H 0.11 0.81 7.19 -51.93 -0.37 0.44 16 9 C -0.17 -1.42 9.90 -26.71 -0.26 -1.69 16 10 C -0.16 -1.50 5.85 -90.60 -0.53 -2.03 16 11 H 0.11 0.92 8.04 -51.93 -0.42 0.51 16 12 C 0.15 1.98 4.76 -4.05 -0.02 1.96 16 13 N -0.74 -10.79 5.56 -60.30 -0.33 -11.12 16 14 C 0.51 10.09 7.83 -10.99 -0.09 10.01 16 15 O -0.54 -13.07 15.98 5.56 0.09 -12.98 16 16 C -0.13 -2.69 5.64 -27.88 -0.16 -2.85 16 17 C 0.04 1.01 4.26 -27.88 -0.12 0.90 16 18 C -0.53 -15.18 9.11 -34.44 -0.31 -15.49 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.80 13.29 55.43 0.74 -27.06 16 22 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 H 0.05 0.36 7.40 -51.93 -0.38 -0.03 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 0.88 8.03 -51.93 -0.42 0.46 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.97 8.02 -51.93 -0.42 0.56 16 34 H 0.06 0.89 7.62 -51.93 -0.40 0.49 16 35 H 0.40 4.51 8.40 -40.82 -0.34 4.16 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 333.46 15.07 5.03 5.03 Total: -1.00 -33.81 333.46 -9.42 -43.23 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.89 Total: 0.67 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -3.03 Total: -14.61 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.40 Total: -38.19 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.09 Total: -12.98 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.81 -9.42 -43.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899398459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.045 kcal (2) G-P(sol) polarization free energy of solvation -33.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds