Wall clock time and date at job start Sun Mar 29 2020 23:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46880 * 2 1 4 4 C 1.50696 * 109.47091 * 239.99684 * 2 1 3 5 5 H 1.07998 * 119.99978 * 240.00149 * 4 2 1 6 6 C 1.37877 * 120.00048 * 60.00096 * 4 2 1 7 7 N 1.31515 * 120.00081 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99945 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46991 * 60.00027 * 8 6 4 10 10 H 1.48497 * 109.47048 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46952 * 299.99882 * 8 6 4 12 12 C 1.50704 * 109.46873 * 119.99829 * 2 1 3 13 13 O 1.21273 * 119.99995 * 120.00383 * 12 2 1 14 14 N 1.34783 * 119.99720 * 300.00040 * 12 2 1 15 15 C 1.46505 * 119.99624 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.46696 * 179.97438 * 15 14 12 17 17 C 1.53003 * 109.46834 * 179.97438 * 16 15 14 18 18 H 1.09007 * 110.43010 * 52.46173 * 17 16 15 19 19 C 1.55238 * 110.46855 * 289.81033 * 17 16 15 20 20 C 1.54894 * 102.58338 * 203.39183 * 19 17 16 21 21 C 1.54266 * 104.31305 * 37.93170 * 20 19 17 22 22 H 1.09004 * 117.41014 * 116.29930 * 21 20 19 23 23 C 1.52998 * 118.20104 * 272.14021 * 21 20 19 24 24 C 1.53006 * 60.37534 * 93.61933 * 23 21 20 25 25 H 1.08997 * 119.75478 * 111.13075 * 24 23 21 26 26 H 1.09004 * 109.47539 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47009 * 300.00203 * 1 2 3 28 28 H 1.08999 * 109.47180 * 60.00446 * 1 2 3 29 29 H 0.96994 * 119.99881 * 179.97438 * 7 6 4 30 30 H 0.97001 * 119.99806 * 359.97438 * 14 12 2 31 31 H 1.08996 * 109.47273 * 59.99679 * 15 14 12 32 32 H 1.08999 * 109.46493 * 299.99514 * 15 14 12 33 33 H 1.08996 * 109.47303 * 59.99965 * 16 15 14 34 34 H 1.08995 * 109.47020 * 299.99352 * 16 15 14 35 35 H 1.08996 * 110.89448 * 85.10747 * 19 17 16 36 36 H 1.08993 * 110.76342 * 321.62413 * 19 17 16 37 37 H 1.09002 * 110.48891 * 279.18596 * 20 19 17 38 38 H 1.08998 * 110.48494 * 156.67683 * 20 19 17 39 39 H 1.08994 * 117.46253 * 201.21399 * 23 21 20 40 40 H 1.08997 * 117.45883 * 346.02052 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.8257 -2.5204 -4.0075 10 1 1.8270 -0.4202 -5.2203 11 1 3.8063 -1.1212 -4.0080 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7066 -0.2498 2.4546 15 6 2.1954 -0.9401 3.6509 16 6 1.6857 -0.2185 4.9000 17 6 2.1956 -0.9397 6.1493 18 1 3.2772 -1.0668 6.1006 19 6 1.4913 -2.3140 6.3083 20 6 1.6345 -2.5932 7.8251 21 6 1.4435 -1.2127 8.4867 22 1 0.5821 -1.0854 9.1424 23 6 2.6736 -0.3211 8.6673 24 6 1.8002 -0.1615 7.4212 25 1 1.2017 0.7403 7.2920 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7088 1.1611 -3.4844 30 1 1.1493 0.5391 2.5435 31 1 3.2853 -0.9398 3.6507 32 1 1.8323 -1.9679 3.6510 33 1 0.5958 -0.2185 4.9004 34 1 2.0491 0.8091 4.8996 35 1 1.9998 -3.0812 5.7246 36 1 0.4409 -2.2447 6.0257 37 1 2.6252 -2.9893 8.0482 38 1 0.8632 -3.2867 8.1598 39 1 2.6196 0.4628 9.4227 40 1 3.6525 -0.7831 8.5392 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927475586.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:36 Heat of formation + Delta-G solvation = -56.524057 kcal Electronic energy + Delta-G solvation = -18164.287932 eV Core-core repulsion = 15363.815378 eV Total energy + Delta-G solvation = -2800.472555 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76864 -40.27577 -36.42402 -35.74657 -33.63021 -32.37233 -31.24031 -27.71239 -27.15919 -24.61529 -23.88745 -22.56903 -21.34367 -21.00267 -20.25753 -18.35753 -17.74726 -17.00582 -16.53223 -16.40741 -16.28025 -15.66966 -15.18787 -14.66948 -14.43244 -14.05516 -13.81930 -13.67563 -13.41650 -12.97701 -12.93878 -12.73169 -12.59102 -12.45929 -12.18876 -12.02511 -12.00107 -11.90508 -11.59807 -11.40034 -11.04675 -10.94143 -10.59849 -10.48357 -10.28293 -9.93687 -8.14929 -6.25509 1.41107 1.42818 1.51419 1.94556 2.36645 2.55647 2.77235 3.14451 3.51001 3.81201 3.84041 4.07354 4.17928 4.30480 4.36399 4.40733 4.56488 4.61671 4.63792 4.66649 4.75825 4.80925 4.85346 4.95380 4.96037 5.02987 5.10655 5.15065 5.17489 5.26676 5.36004 5.39829 5.50536 5.55444 5.63353 5.76002 5.95144 6.22527 6.75690 6.87832 7.40192 7.56534 8.90778 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.055096 B = 0.003552 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.081223 B = 7881.728808 C = 8070.846129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.023 3.977 3 H 0.042 0.958 4 C -0.532 4.532 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.273 1.273 11 H -0.276 1.276 12 C 0.518 3.482 13 O -0.591 6.591 14 N -0.726 5.726 15 C 0.120 3.880 16 C -0.107 4.107 17 C -0.058 4.058 18 H 0.071 0.929 19 C -0.124 4.124 20 C -0.096 4.096 21 C -0.170 4.170 22 H 0.116 0.884 23 C -0.151 4.151 24 C -0.166 4.166 25 H 0.116 0.884 26 H 0.021 0.979 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.265 0.735 30 H 0.410 0.590 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.564 0.041 22.059 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.002 3.998 3 H 0.059 0.941 4 C -0.571 4.571 5 H 0.066 0.934 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.307 3.693 13 O -0.471 6.471 14 N -0.379 5.379 15 C -0.003 4.003 16 C -0.144 4.144 17 C -0.077 4.077 18 H 0.090 0.910 19 C -0.161 4.161 20 C -0.134 4.134 21 C -0.188 4.188 22 H 0.134 0.866 23 C -0.188 4.188 24 C -0.184 4.184 25 H 0.134 0.866 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.247 0.753 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.161 -0.552 21.849 21.886 hybrid contribution 0.150 -0.110 -1.022 1.039 sum -1.011 -0.662 20.827 20.862 Atomic orbital electron populations 1.21553 0.94966 0.99371 1.01786 1.18815 0.95424 0.95923 0.89667 0.94064 1.21286 1.31709 1.12799 0.91276 0.93433 1.25603 0.95171 0.95760 1.01422 1.69939 1.37144 1.23578 1.24395 0.85650 0.78675 0.78745 0.78805 1.20154 1.19816 1.20182 1.21576 0.78231 0.83701 0.85805 1.90495 1.40116 1.28833 1.87649 1.46036 1.54332 1.32603 1.04953 1.21353 0.98326 0.96358 0.84308 1.21695 1.01746 0.99671 0.91324 1.21536 0.99740 0.94238 0.92199 0.91033 1.22870 1.00789 0.96145 0.96296 1.21953 1.02042 0.95413 0.93978 1.23323 1.00509 0.92350 1.02659 0.86612 1.23129 0.95043 1.01869 0.98768 1.23254 1.05269 1.00545 0.89300 0.86572 0.95958 0.92809 0.91080 0.92554 0.75348 0.93451 0.93074 0.90201 0.90191 0.91951 0.91118 0.91543 0.90586 0.87295 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.87 71.98 0.64 -4.82 16 2 C 0.02 1.17 2.64 -12.29 -0.03 1.14 16 3 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.53 -31.48 8.37 25.60 0.21 -31.27 16 5 H 0.05 3.00 6.75 -2.91 -0.02 2.98 16 6 C 0.02 1.11 5.30 84.65 0.45 1.56 16 7 N -0.91 -51.69 11.32 21.45 0.24 -51.45 16 8 Si 0.96 45.47 29.54 68.60 2.03 47.49 16 9 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 C 0.52 24.40 7.15 87.66 0.63 25.02 16 13 O -0.59 -32.53 15.46 -3.01 -0.05 -32.58 16 14 N -0.73 -24.96 5.45 -463.05 -2.52 -27.48 16 15 C 0.12 3.48 5.55 86.38 0.48 3.96 16 16 C -0.11 -2.11 4.80 30.60 0.15 -1.96 16 17 C -0.06 -1.05 2.66 -9.60 -0.03 -1.08 16 18 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 19 C -0.12 -2.23 5.70 32.01 0.18 -2.05 16 20 C -0.10 -1.48 6.61 31.67 0.21 -1.27 16 21 C -0.17 -2.46 6.94 -10.07 -0.07 -2.53 16 22 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 23 C -0.15 -2.07 10.07 30.60 0.31 -1.76 16 24 C -0.17 -2.56 6.36 -10.07 -0.06 -2.62 16 25 H 0.12 1.66 8.05 -2.39 -0.02 1.64 16 26 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.05 1.97 7.56 -2.38 -0.02 1.95 16 28 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 29 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.41 11.61 7.89 -92.71 -0.73 10.87 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 1.59 7.56 -2.39 -0.02 1.58 16 33 H 0.08 1.46 8.02 -2.39 -0.02 1.44 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.23 8.06 -2.39 -0.02 1.21 16 36 H 0.07 1.29 7.97 -2.39 -0.02 1.27 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -67.69 321.78 3.04 -64.65 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.28 Total: 17.05 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 3.06 Total: -17.69 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -2.28 Total: -78.93 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.05 Total: -32.58 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -67.69 3.04 -64.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927475586.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.125 kcal (2) G-P(sol) polarization free energy of solvation -67.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds