Wall clock time and date at job start Sun Mar 29 2020 23:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47223 * 2 1 4 4 C 1.50695 * 109.47147 * 239.99833 * 2 1 3 5 5 H 1.07998 * 119.99906 * 240.00053 * 4 2 1 6 6 C 1.37876 * 119.99958 * 60.00557 * 4 2 1 7 7 N 1.31509 * 120.00089 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00059 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47059 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47194 * 119.99650 * 8 6 4 11 11 H 1.48500 * 109.47147 * 239.99726 * 8 6 4 12 12 C 1.50703 * 109.46880 * 119.99725 * 2 1 3 13 13 O 1.21283 * 119.99776 * 119.99552 * 12 2 1 14 14 N 1.34777 * 120.00431 * 300.00275 * 12 2 1 15 15 C 1.46501 * 120.00094 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47057 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47118 * 179.97438 * 16 15 14 18 18 H 1.08996 * 110.53849 * 56.15669 * 17 16 15 19 19 C 1.54889 * 110.48592 * 293.54400 * 17 16 15 20 20 C 1.54891 * 102.74891 * 203.37985 * 19 17 16 21 21 C 1.54266 * 104.31343 * 37.87666 * 20 19 17 22 22 H 1.09000 * 117.41374 * 196.48160 * 21 20 19 23 23 C 1.55782 * 118.11191 * 39.94747 * 21 20 19 24 24 C 1.53003 * 59.86518 * 266.78956 * 23 21 20 25 25 H 1.08996 * 119.29698 * 248.36500 * 24 23 21 26 26 H 1.08998 * 109.47684 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47336 * 300.00044 * 1 2 3 28 28 H 1.09001 * 109.47177 * 59.99873 * 1 2 3 29 29 H 0.97001 * 120.00305 * 180.02562 * 7 6 4 30 30 H 0.97004 * 119.99561 * 359.97438 * 14 12 2 31 31 H 1.08994 * 109.47063 * 59.99610 * 15 14 12 32 32 H 1.08998 * 109.46732 * 299.99403 * 15 14 12 33 33 H 1.09001 * 109.46994 * 59.99442 * 16 15 14 34 34 H 1.09002 * 109.46915 * 299.99835 * 16 15 14 35 35 H 1.08998 * 110.75807 * 85.06488 * 19 17 16 36 36 H 1.08998 * 110.91370 * 321.76573 * 19 17 16 37 37 H 1.09002 * 110.48740 * 156.62163 * 20 19 17 38 38 H 1.08998 * 110.48604 * 279.13048 * 20 19 17 39 39 H 1.08995 * 117.11858 * 159.22272 * 23 21 20 40 40 H 1.09005 * 118.10909 * 13.90670 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 3.1484 -2.2857 -3.6037 10 1 1.1679 -1.5866 -4.8165 11 1 3.1474 -0.1858 -4.8160 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1193 14 7 1.7066 -0.2500 2.4547 15 6 2.1954 -0.9402 3.6508 16 6 1.6847 -0.2195 4.9001 17 6 2.1947 -0.9407 6.1493 18 1 3.2823 -1.0100 6.1336 19 6 1.5631 -2.3509 6.2568 20 6 1.6735 -2.6604 7.7704 21 6 1.3889 -1.3090 8.4578 22 1 1.6760 -1.2080 9.5044 23 6 0.2658 -0.4063 7.8655 24 6 1.7182 -0.2145 7.4242 25 1 2.2475 0.6938 7.7119 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.7083 1.1609 -3.4844 30 1 1.1492 0.5390 2.5436 31 1 3.2854 -0.9398 3.6506 32 1 1.8324 -1.9680 3.6510 33 1 0.5947 -0.2202 4.8999 34 1 2.0473 0.8085 4.9001 35 1 2.1313 -3.0743 5.6721 36 1 0.5200 -2.3352 5.9409 37 1 0.9299 -3.4015 8.0636 38 1 2.6763 -3.0097 8.0162 39 1 -0.1634 0.3490 8.5238 40 1 -0.4236 -0.8493 7.1467 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927475588.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:38 Heat of formation + Delta-G solvation = -36.627854 kcal Electronic energy + Delta-G solvation = -18250.968405 eV Core-core repulsion = 15451.358615 eV Total energy + Delta-G solvation = -2799.609791 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.96222 -38.64208 -34.94566 -33.67306 -32.13293 -30.67885 -30.05105 -26.54102 -25.08918 -23.88203 -22.84396 -21.66634 -19.84907 -19.54889 -18.78886 -16.78421 -16.21302 -15.87770 -15.18808 -14.96900 -14.63873 -14.30999 -13.75525 -13.58533 -12.90888 -12.80442 -12.70576 -12.29958 -12.05201 -11.57313 -11.41248 -11.29628 -11.09731 -10.99371 -10.87570 -10.66977 -10.65353 -10.59149 -10.20097 -10.17495 -9.92663 -9.71584 -8.91856 -8.55407 -8.34675 -8.27581 -5.99648 -4.02361 3.34643 3.41923 3.43824 3.50788 3.81665 3.99420 4.22168 4.43723 4.51428 4.65453 4.89336 4.91423 5.07679 5.21068 5.28616 5.33646 5.38076 5.46156 5.55175 5.57816 5.70901 5.80489 5.83028 5.95593 5.98665 6.04458 6.08642 6.19232 6.30976 6.42513 6.66364 6.87388 6.97723 7.18248 7.52528 7.80000 8.03907 8.20795 8.52309 9.07414 9.32302 9.63267 11.08096 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.052826 B = 0.003676 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.919090 B = 7614.724714 C = 7887.856211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.027 3.973 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.518 3.482 13 O -0.549 6.549 14 N -0.748 5.748 15 C 0.120 3.880 16 C -0.120 4.120 17 C -0.059 4.059 18 H 0.083 0.917 19 C -0.128 4.128 20 C -0.096 4.096 21 C -0.173 4.173 22 H 0.108 0.892 23 C -0.154 4.154 24 C -0.157 4.157 25 H 0.106 0.894 26 H 0.030 0.970 27 H 0.012 0.988 28 H 0.092 0.908 29 H 0.259 0.741 30 H 0.395 0.605 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.514 -0.683 20.574 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.006 3.994 3 H 0.069 0.931 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.307 3.693 13 O -0.425 6.425 14 N -0.402 5.402 15 C -0.005 4.005 16 C -0.158 4.158 17 C -0.078 4.078 18 H 0.101 0.899 19 C -0.166 4.166 20 C -0.133 4.133 21 C -0.191 4.191 22 H 0.126 0.874 23 C -0.191 4.191 24 C -0.175 4.175 25 H 0.124 0.876 26 H 0.049 0.951 27 H 0.031 0.969 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.228 0.772 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.049 -1.321 20.335 20.405 hybrid contribution 0.031 0.098 -0.668 0.676 sum -1.018 -1.224 19.667 19.731 Atomic orbital electron populations 1.21731 0.96590 0.99755 1.00868 1.18878 0.94130 0.96832 0.89519 0.93066 1.21206 1.30736 1.12727 0.89040 0.90751 1.24956 0.95178 0.95094 0.99117 1.69881 1.37287 1.23209 1.23359 0.86410 0.78613 0.79798 0.82510 1.19559 1.21070 1.21076 1.21954 0.78465 0.84281 0.84577 1.90523 1.38085 1.26987 1.86868 1.46300 1.55504 1.32662 1.05762 1.21205 0.98819 0.96381 0.84073 1.21743 1.01274 0.99655 0.93118 1.21515 1.00133 0.93928 0.92238 0.89916 1.22636 1.01369 0.96633 0.95941 1.21910 1.01380 0.95347 0.94706 1.23615 1.04817 0.92901 0.97725 0.87432 1.23303 0.91315 1.01707 1.02747 1.23177 0.98386 0.99679 0.96269 0.87556 0.95062 0.96938 0.88901 0.93074 0.77158 0.92478 0.92283 0.91345 0.91342 0.90842 0.91090 0.91642 0.91041 0.88594 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 2 C 0.03 0.70 2.64 -92.93 -0.25 0.45 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.44 8.37 -34.44 -0.29 -14.73 16 5 H 0.07 2.28 6.75 -52.49 -0.35 1.93 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.53 11.32 55.43 0.63 -24.90 16 8 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.52 12.14 7.15 -10.98 -0.08 12.06 16 13 O -0.55 -14.76 15.46 5.55 0.09 -14.68 16 14 N -0.75 -13.31 5.45 -60.29 -0.33 -13.64 16 15 C 0.12 1.79 5.52 -4.04 -0.02 1.76 16 16 C -0.12 -1.32 4.87 -26.73 -0.13 -1.45 16 17 C -0.06 -0.58 2.83 -88.96 -0.25 -0.83 16 18 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.13 -1.24 5.03 -24.74 -0.12 -1.36 16 20 C -0.10 -0.81 6.77 -25.07 -0.17 -0.98 16 21 C -0.17 -1.44 7.19 -87.90 -0.63 -2.07 16 22 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 23 C -0.15 -1.28 9.95 -25.25 -0.25 -1.53 16 24 C -0.16 -1.38 6.33 -89.38 -0.57 -1.95 16 25 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 28 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.39 6.07 7.89 -40.82 -0.32 5.75 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.93 7.38 -51.93 -0.38 0.55 16 33 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.74 8.01 -51.93 -0.42 0.33 16 36 H 0.07 0.71 7.31 -51.93 -0.38 0.33 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.82 7.27 -51.93 -0.38 0.44 16 LS Contribution 319.97 15.07 4.82 4.82 Total: -1.00 -31.42 319.97 -9.06 -40.48 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.72 Total: 2.69 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -2.52 Total: -11.86 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.30 Total: -38.54 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.09 Total: -14.68 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.42 -9.06 -40.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927475588.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.853 kcal (2) G-P(sol) polarization free energy of solvation -31.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds