Wall clock time and date at job start Sun Mar 29 2020 23:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.76235 * 2 1 4 4 C 1.52873 * 109.61955 * 239.54753 * 2 1 3 5 5 C 1.52710 * 110.15132 * 185.74982 * 4 2 1 6 6 H 1.09002 * 114.91095 * 232.15470 * 5 4 2 7 7 C 1.53657 * 116.03078 * 90.20236 * 5 4 2 8 8 C 1.52070 * 120.52660 * 21.47089 * 5 4 2 9 9 H 1.09002 * 115.92818 * 210.74335 * 8 5 4 10 10 C 1.52079 * 120.01606 * 355.45520 * 8 5 4 11 11 C 1.52289 * 110.82904 * 20.45918 * 10 8 5 12 12 H 1.08998 * 109.18841 * 65.86261 * 11 10 8 13 13 C 1.50699 * 109.76054 * 186.03826 * 11 10 8 14 14 O 1.21285 * 119.99839 * 83.06012 * 13 11 10 15 15 N 1.34771 * 120.00187 * 263.06809 * 13 11 10 16 16 C 1.46500 * 120.00170 * 4.89947 * 15 13 11 17 17 C 1.46504 * 120.00370 * 184.90390 * 15 13 11 18 18 C 1.50692 * 109.47179 * 89.99608 * 17 15 13 19 19 H 1.07999 * 120.00192 * 0.02562 * 18 17 15 20 20 C 1.37881 * 119.99732 * 180.02562 * 18 17 15 21 21 N 1.31503 * 120.00342 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99788 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47388 * 59.99731 * 22 20 18 24 24 H 1.48499 * 109.47336 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47087 * 300.00030 * 22 20 18 26 26 H 1.08998 * 109.47103 * 178.51966 * 1 2 3 27 27 H 1.09003 * 109.47754 * 298.52126 * 1 2 3 28 28 H 1.09000 * 109.47654 * 58.51925 * 1 2 3 29 29 H 1.08996 * 109.35831 * 65.54256 * 4 2 1 30 30 H 1.09004 * 109.24335 * 305.88655 * 4 2 1 31 31 H 1.09000 * 117.53511 * 140.93841 * 7 5 4 32 32 H 1.08994 * 117.53821 * 355.68995 * 7 5 4 33 33 H 1.08999 * 109.26382 * 140.75171 * 10 8 5 34 34 H 1.09003 * 109.26414 * 260.21782 * 10 8 5 35 35 H 1.08997 * 109.47417 * 84.83687 * 16 15 13 36 36 H 1.08997 * 109.47790 * 204.84305 * 16 15 13 37 37 H 1.09007 * 109.46752 * 324.84318 * 16 15 13 38 38 H 1.09002 * 109.47311 * 209.99936 * 17 15 13 39 39 H 1.09003 * 109.46358 * 329.99698 * 17 15 13 40 40 H 0.97001 * 120.00683 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8985 1.0259 0.0000 4 6 2.0433 -0.7298 -1.2413 5 6 3.5635 -0.8620 -1.1828 6 1 4.0896 -0.5081 -2.0694 7 6 4.1045 -2.1305 -0.5051 8 6 4.2965 -0.7672 0.1461 9 1 5.3059 -0.3577 0.1055 10 6 3.5288 -0.4363 1.4165 11 6 2.0447 -0.7319 1.2448 12 1 1.9052 -1.8058 1.1217 13 6 1.2873 -0.2593 2.4589 14 8 0.9570 0.9039 2.5528 15 7 0.9772 -1.1292 3.4405 16 6 1.4679 -2.5082 3.3792 17 6 0.1492 -0.6958 4.5688 18 6 -1.3036 -0.9317 4.2455 19 1 -1.5824 -1.3617 3.2948 20 6 -2.2770 -0.5984 5.1634 21 7 -1.9376 -0.0752 6.3211 22 14 -4.0779 -0.8914 4.7629 23 1 -4.3006 -2.3382 4.5133 24 1 -4.9173 -0.4509 5.9060 25 1 -4.4478 -0.1173 3.5507 26 1 -0.3633 -1.0273 -0.0265 27 1 -0.3635 0.4907 0.9029 28 1 -0.3634 0.5366 -0.8764 29 1 1.7635 -0.1678 -2.1324 30 1 1.5957 -1.7227 -1.2851 31 1 4.9798 -2.6047 -0.9489 32 1 3.3804 -2.8078 -0.0523 33 1 3.9195 -1.0353 2.2391 34 1 3.6571 0.6208 1.6493 35 1 2.4741 -2.5547 3.7955 36 1 0.8062 -3.1553 3.9550 37 1 1.4884 -2.8407 2.3413 38 1 0.4205 -1.2647 5.4581 39 1 0.3128 0.3660 4.7526 40 1 -2.6223 0.1590 6.9671 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930592648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:38 Heat of formation + Delta-G solvation = -27.067946 kcal Electronic energy + Delta-G solvation = -19473.182297 eV Core-core repulsion = 16673.987055 eV Total energy + Delta-G solvation = -2799.195242 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.34882 -38.17606 -34.88469 -33.86976 -32.62399 -31.24807 -27.87826 -27.09769 -25.88587 -24.79754 -22.72051 -21.28489 -21.08882 -18.77072 -18.12758 -16.54963 -16.46172 -15.73648 -15.09771 -14.72133 -14.31560 -13.99715 -13.84916 -13.47406 -13.11787 -12.54029 -12.27697 -12.18043 -12.13082 -11.92475 -11.81675 -11.39886 -11.21302 -11.10982 -10.88934 -10.81980 -10.59599 -10.41949 -10.32979 -10.13774 -9.72269 -9.60797 -9.58813 -8.67850 -8.41892 -7.57850 -6.02668 -4.07665 3.32287 3.36790 3.38634 3.49362 3.69079 4.02346 4.45634 4.57803 4.74569 4.82469 4.96687 5.10004 5.22096 5.30510 5.31593 5.44062 5.53855 5.64015 5.70311 5.79304 5.86142 5.86365 5.97152 5.98489 6.05643 6.12107 6.18315 6.18904 6.26463 6.30738 6.38507 6.65135 6.82238 7.10614 7.48303 7.59170 7.94130 8.25738 8.48288 8.92446 9.16887 9.57590 11.05280 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.032986 B = 0.005916 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.637338 B = 4731.400489 C = 5056.137558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.068 4.068 3 H 0.078 0.922 4 C -0.084 4.084 5 C -0.147 4.147 6 H 0.099 0.901 7 C -0.186 4.186 8 C -0.134 4.134 9 H 0.099 0.901 10 C -0.076 4.076 11 C -0.108 4.108 12 H 0.086 0.914 13 C 0.516 3.484 14 O -0.542 6.542 15 N -0.603 5.603 16 C 0.083 3.917 17 C 0.244 3.756 18 C -0.526 4.526 19 H 0.056 0.944 20 C 0.062 3.938 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.030 0.970 39 H 0.044 0.956 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.252 -5.047 -12.877 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.086 4.086 3 H 0.096 0.904 4 C -0.122 4.122 5 C -0.165 4.165 6 H 0.117 0.883 7 C -0.222 4.222 8 C -0.152 4.152 9 H 0.117 0.883 10 C -0.114 4.114 11 C -0.129 4.129 12 H 0.104 0.896 13 C 0.302 3.698 14 O -0.420 6.420 15 N -0.334 5.334 16 C -0.061 4.061 17 C 0.125 3.875 18 C -0.565 4.565 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.985 -4.377 -12.611 17.287 hybrid contribution -0.982 -0.374 -0.133 1.059 sum 10.003 -4.751 -12.744 16.883 Atomic orbital electron populations 1.21989 0.94550 1.01642 1.03313 1.20913 0.96018 0.99525 0.92187 0.90369 1.21151 0.92225 1.00693 0.98092 1.22235 0.95963 1.02146 0.96178 0.88261 1.23146 1.03358 0.90895 1.04846 1.21784 0.99817 1.00177 0.93410 0.88279 1.20618 0.92459 1.02461 0.95837 1.21397 0.95524 1.01445 0.94551 0.89605 1.20170 0.79936 0.86077 0.83585 1.90634 1.54765 1.17695 1.78909 1.48176 1.50910 1.10024 1.24334 1.21668 0.98678 0.84561 1.01231 1.19284 0.88695 0.97035 0.82516 1.21399 0.91178 1.41891 1.02058 0.92548 1.24929 0.99179 0.95004 0.94930 1.69918 1.33772 1.42611 1.07072 0.86581 0.84538 0.78501 0.77937 1.20268 1.21162 1.20174 0.93302 0.90085 0.93151 0.91490 0.91682 0.89231 0.88683 0.91264 0.90768 0.93868 0.90750 0.92515 0.95165 0.93775 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 8.73 37.16 0.32 -2.28 16 2 C -0.07 -1.00 2.07 -90.53 -0.19 -1.19 16 3 H 0.08 1.24 8.06 -51.93 -0.42 0.82 16 4 C -0.08 -0.97 5.12 -26.95 -0.14 -1.11 16 5 C -0.15 -1.54 6.19 -90.90 -0.56 -2.10 16 6 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 7 C -0.19 -1.82 9.65 -26.74 -0.26 -2.08 16 8 C -0.13 -1.46 6.03 -91.92 -0.55 -2.02 16 9 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 10 C -0.08 -1.02 5.18 -27.56 -0.14 -1.16 16 11 C -0.11 -1.67 1.46 -91.98 -0.13 -1.80 16 12 H 0.09 1.22 4.72 -51.93 -0.25 0.98 16 13 C 0.52 10.78 5.54 -10.99 -0.06 10.72 16 14 O -0.54 -13.61 14.58 5.55 0.08 -13.53 16 15 N -0.60 -12.98 2.86 -182.95 -0.52 -13.50 16 16 C 0.08 1.35 10.23 59.85 0.61 1.96 16 17 C 0.24 6.47 5.17 -5.20 -0.03 6.45 16 18 C -0.53 -15.00 9.39 -34.44 -0.32 -15.33 16 19 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.79 13.28 55.43 0.74 -26.05 16 22 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.69 5.86 -51.93 -0.30 1.38 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.73 8.06 -51.93 -0.42 0.31 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.96 7.27 -51.93 -0.38 0.58 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.09 8.13 -51.93 -0.42 0.66 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 37 H 0.06 0.78 5.86 -51.93 -0.30 0.48 16 38 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 39 H 0.04 1.32 7.36 -51.93 -0.38 0.94 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 314.46 15.07 4.74 4.74 Total: -1.00 -31.92 314.46 -8.17 -40.09 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.64 Total: -0.40 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.55 Total: -8.27 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.21 Total: -39.56 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.08 Total: -13.53 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.92 -8.17 -40.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930592648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.023 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds