Wall clock time and date at job start Sun Mar 29 2020 23:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47107 * 2 1 4 4 C 1.50694 * 109.47085 * 240.00305 * 2 1 3 5 5 H 1.08004 * 120.00063 * 274.83414 * 4 2 1 6 6 C 1.37880 * 120.00070 * 94.83338 * 4 2 1 7 7 N 1.31511 * 120.00051 * 174.68218 * 6 4 2 8 8 Si 1.86793 * 119.99958 * 354.68267 * 6 4 2 9 9 H 1.48498 * 109.47242 * 94.46861 * 8 6 4 10 10 H 1.48510 * 109.47174 * 214.46729 * 8 6 4 11 11 H 1.48500 * 109.47428 * 334.46441 * 8 6 4 12 12 N 1.46494 * 109.47283 * 119.99971 * 2 1 3 13 13 C 1.34777 * 120.00300 * 275.00046 * 12 2 1 14 14 O 1.21280 * 119.99910 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00004 * 180.02562 * 13 12 2 16 16 H 1.09001 * 108.78363 * 59.99876 * 15 13 12 17 17 C 1.51424 * 108.80922 * 301.60277 * 15 13 12 18 18 C 1.52132 * 112.27339 * 192.75983 * 17 15 13 19 19 H 1.08996 * 115.24958 * 230.03975 * 18 17 15 20 20 C 1.53683 * 116.29108 * 87.70615 * 18 17 15 21 21 C 1.51996 * 120.65589 * 18.82872 * 18 17 15 22 22 H 1.08998 * 115.70429 * 210.88576 * 21 18 17 23 23 C 1.51443 * 120.13252 * 354.37268 * 21 18 17 24 24 C 1.51280 * 108.71829 * 178.34793 * 15 13 12 25 25 H 1.09000 * 108.80376 * 304.68692 * 24 15 13 26 26 C 1.52994 * 108.80929 * 62.95567 * 24 15 13 27 27 H 1.09004 * 109.46933 * 305.02460 * 1 2 3 28 28 H 1.08990 * 109.47182 * 65.02973 * 1 2 3 29 29 H 1.09006 * 109.46921 * 185.03333 * 1 2 3 30 30 H 0.96998 * 120.00297 * 179.97438 * 7 6 4 31 31 H 0.97002 * 120.00032 * 95.00425 * 12 2 1 32 32 H 1.08998 * 108.92230 * 313.47806 * 17 15 13 33 33 H 1.09001 * 108.91870 * 72.12901 * 17 15 13 34 34 H 1.09000 * 117.53778 * 355.63656 * 20 18 17 35 35 H 1.08995 * 117.53732 * 140.82398 * 20 18 17 36 36 H 1.09006 * 108.84107 * 139.91688 * 23 21 18 37 37 H 1.08995 * 108.84456 * 258.26782 * 23 21 18 38 38 H 1.08998 * 109.47306 * 38.97733 * 26 24 15 39 39 H 1.09005 * 109.47175 * 158.97526 * 26 24 15 40 40 H 1.08996 * 109.47130 * 278.97510 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1380 -1.7852 -1.2282 6 6 2.3570 0.0119 -2.3592 7 7 2.8933 -0.5940 -3.3959 8 14 2.0351 1.8510 -2.4158 9 1 3.2637 2.5813 -2.0129 10 1 1.6555 2.2449 -3.7966 11 1 0.9300 2.1892 -1.4833 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1584 2.4117 15 6 2.6500 -0.7286 3.5874 16 1 3.6489 -1.1155 3.3856 17 6 1.7284 -1.8911 3.8910 18 6 1.9714 -2.4732 5.2754 19 1 2.0956 -3.5555 5.3094 20 6 1.1948 -1.8250 6.4323 21 6 2.7064 -1.6699 6.3358 22 1 3.2883 -2.2516 7.0508 23 6 3.3174 -0.3290 5.9862 24 6 2.7329 0.2673 4.7232 25 1 3.3545 1.1062 4.4103 26 6 1.3263 0.7862 5.0278 27 1 -0.3633 0.5898 0.8416 28 1 -0.3633 0.4338 -0.9315 29 1 -0.3633 -1.0238 0.0902 30 1 3.1214 -0.0860 -4.1901 31 1 2.2491 -1.6317 1.1525 32 1 0.6954 -1.5491 3.8277 33 1 1.8880 -2.6721 3.1475 34 1 0.5830 -0.9527 6.2023 35 1 0.8031 -2.4833 7.2076 36 1 3.1478 0.3613 6.8126 37 1 4.3915 -0.4560 5.8512 38 1 0.6114 -0.0326 4.9466 39 1 1.2999 1.1926 6.0389 40 1 1.0653 1.5683 4.3149 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931155518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:47 Heat of formation + Delta-G solvation = -30.300479 kcal Electronic energy + Delta-G solvation = -19376.446453 eV Core-core repulsion = 16577.111038 eV Total energy + Delta-G solvation = -2799.335415 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.65783 -38.33857 -35.02384 -33.63129 -32.52120 -31.54100 -29.41734 -27.60698 -25.29530 -24.96147 -22.24718 -21.31332 -20.70518 -19.51318 -17.74195 -17.15740 -16.66746 -15.86107 -15.41976 -14.61069 -14.50880 -14.08676 -13.75657 -13.27396 -13.21681 -12.77039 -12.54663 -12.32016 -12.26937 -12.02415 -11.83631 -11.43668 -11.17736 -10.97810 -10.81630 -10.74280 -10.67998 -10.48714 -10.17161 -9.85265 -9.71365 -9.60552 -9.15572 -8.87717 -8.72331 -8.01575 -6.22833 -4.25589 3.25070 3.33918 3.34989 3.42717 3.70351 4.01962 4.33611 4.64873 4.68935 4.78129 4.90427 5.09515 5.15293 5.21960 5.36656 5.38567 5.58358 5.62186 5.72596 5.78126 5.88516 5.97319 6.02058 6.06178 6.12188 6.16147 6.28051 6.32994 6.38429 6.54570 6.56044 6.68705 6.74259 6.97482 7.20107 7.43549 7.60047 8.16524 8.62076 8.78733 9.05723 9.40267 10.89032 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.038190 B = 0.005563 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.999257 B = 5031.995691 C = 5238.210254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.232 3.768 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.890 5.890 8 Si 0.873 3.127 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.257 1.257 12 N -0.703 5.703 13 C 0.505 3.495 14 O -0.556 6.556 15 C -0.098 4.098 16 H 0.089 0.911 17 C -0.079 4.079 18 C -0.144 4.144 19 H 0.101 0.899 20 C -0.195 4.195 21 C -0.137 4.137 22 H 0.094 0.906 23 C -0.082 4.082 24 C -0.069 4.069 25 H 0.077 0.923 26 C -0.159 4.159 27 H 0.028 0.972 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.267 0.733 31 H 0.392 0.608 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.044 0.956 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.151 -2.601 17.832 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.129 3.871 3 H 0.067 0.933 4 C -0.569 4.569 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.699 3.301 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.181 1.181 12 N -0.351 5.351 13 C 0.290 3.710 14 O -0.435 6.435 15 C -0.119 4.119 16 H 0.107 0.893 17 C -0.117 4.117 18 C -0.162 4.162 19 H 0.119 0.881 20 C -0.232 4.232 21 C -0.155 4.155 22 H 0.113 0.887 23 C -0.119 4.119 24 C -0.088 4.088 25 H 0.095 0.905 26 C -0.216 4.216 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.226 0.774 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.297 -1.733 17.627 17.759 hybrid contribution 0.070 0.302 -0.245 0.395 sum -1.227 -1.432 17.382 17.484 Atomic orbital electron populations 1.22253 0.98857 0.99921 0.99688 1.19052 0.90659 0.94306 0.83050 0.93329 1.21016 1.45007 0.95641 0.95219 0.90428 1.24926 0.93386 0.98533 0.95525 1.69896 1.40688 1.36761 1.05257 0.86915 0.79917 0.85639 0.77613 1.20113 1.21094 1.18119 1.46603 1.64891 1.13791 1.09842 1.20524 0.78327 0.87465 0.84722 1.90587 1.51601 1.16253 1.85100 1.20611 1.00915 0.96296 0.94125 0.89303 1.20537 0.99711 0.96337 0.95074 1.22009 1.05216 0.98184 0.90767 0.88061 1.23483 0.94707 1.03884 1.01125 1.21606 0.94408 0.98202 1.01261 0.88748 1.20508 0.99497 0.94588 0.97320 1.20157 0.98382 0.97234 0.93059 0.90466 1.22310 0.96263 1.02077 1.00927 0.95283 0.92786 0.93733 0.92318 0.77448 0.91137 0.90870 0.87284 0.89477 0.91395 0.91839 0.92343 0.93681 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.16 37.16 0.34 -2.92 16 2 C 0.23 5.53 2.10 -69.09 -0.15 5.38 16 3 H 0.05 1.27 5.07 -51.93 -0.26 1.01 16 4 C -0.53 -14.29 9.05 -34.44 -0.31 -14.61 16 5 H 0.08 2.20 8.06 -52.48 -0.42 1.78 16 6 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 7 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 8 Si 0.87 21.58 26.53 -169.99 -4.51 17.07 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.26 -6.23 6.17 56.52 0.35 -5.88 16 12 N -0.70 -14.10 4.95 -54.94 -0.27 -14.37 16 13 C 0.50 9.53 6.72 -10.99 -0.07 9.46 16 14 O -0.56 -12.30 13.41 5.56 0.07 -12.23 16 15 C -0.10 -1.40 2.25 -93.44 -0.21 -1.61 16 16 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 17 C -0.08 -0.97 4.39 -27.97 -0.12 -1.10 16 18 C -0.14 -1.51 6.19 -91.22 -0.56 -2.08 16 19 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 20 C -0.20 -1.96 9.54 -26.75 -0.26 -2.22 16 21 C -0.14 -1.37 5.96 -92.29 -0.55 -1.92 16 22 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 23 C -0.08 -0.88 5.39 -28.32 -0.15 -1.03 16 24 C -0.07 -0.93 2.13 -92.29 -0.20 -1.13 16 25 H 0.08 1.15 7.91 -51.93 -0.41 0.74 16 26 C -0.16 -2.18 7.25 37.15 0.27 -1.92 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 1.20 7.23 -51.93 -0.38 0.83 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.39 7.01 8.08 -40.82 -0.33 6.68 16 32 H 0.07 0.94 6.70 -51.93 -0.35 0.59 16 33 H 0.07 0.85 7.75 -51.93 -0.40 0.44 16 34 H 0.11 1.18 4.73 -51.93 -0.25 0.93 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.68 7.70 -51.93 -0.40 0.28 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.78 3.79 -51.93 -0.20 0.58 16 39 H 0.04 0.53 7.61 -51.93 -0.40 0.14 16 40 H 0.08 1.27 6.27 -51.93 -0.33 0.95 16 LS Contribution 301.03 15.07 4.54 4.54 Total: -1.00 -30.17 301.03 -7.73 -37.90 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.26 Total: 6.12 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -2.07 Total: -13.52 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.50 Total: -39.88 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.07 Total: -12.23 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.51 Total: 17.07 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.17 -7.73 -37.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931155518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.603 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds