Wall clock time and date at job start Sun Mar 29 2020 23:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47107 * 2 1 4 4 C 1.50694 * 109.47085 * 240.00305 * 2 1 3 5 5 H 1.08004 * 120.00063 * 274.83414 * 4 2 1 6 6 C 1.37880 * 120.00070 * 94.83338 * 4 2 1 7 7 N 1.31511 * 120.00051 * 174.68218 * 6 4 2 8 8 Si 1.86793 * 119.99958 * 354.68267 * 6 4 2 9 9 H 1.48498 * 109.47242 * 94.46861 * 8 6 4 10 10 H 1.48510 * 109.47174 * 214.46729 * 8 6 4 11 11 H 1.48500 * 109.47428 * 334.46441 * 8 6 4 12 12 N 1.46494 * 109.47283 * 119.99971 * 2 1 3 13 13 C 1.34777 * 120.00300 * 275.00046 * 12 2 1 14 14 O 1.21280 * 119.99910 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00004 * 180.02562 * 13 12 2 16 16 H 1.09001 * 108.78363 * 59.99876 * 15 13 12 17 17 C 1.51424 * 108.80922 * 301.60277 * 15 13 12 18 18 C 1.52132 * 112.27339 * 192.75983 * 17 15 13 19 19 H 1.08996 * 115.24958 * 230.03975 * 18 17 15 20 20 C 1.53683 * 116.29108 * 87.70615 * 18 17 15 21 21 C 1.51996 * 120.65589 * 18.82872 * 18 17 15 22 22 H 1.08998 * 115.70429 * 210.88576 * 21 18 17 23 23 C 1.51443 * 120.13252 * 354.37268 * 21 18 17 24 24 C 1.51280 * 108.71829 * 178.34793 * 15 13 12 25 25 H 1.09000 * 108.80376 * 304.68692 * 24 15 13 26 26 C 1.52994 * 108.80929 * 62.95567 * 24 15 13 27 27 H 1.09004 * 109.46933 * 305.02460 * 1 2 3 28 28 H 1.08990 * 109.47182 * 65.02973 * 1 2 3 29 29 H 1.09006 * 109.46921 * 185.03333 * 1 2 3 30 30 H 0.96998 * 120.00297 * 179.97438 * 7 6 4 31 31 H 0.97002 * 120.00032 * 95.00425 * 12 2 1 32 32 H 1.08998 * 108.92230 * 313.47806 * 17 15 13 33 33 H 1.09001 * 108.91870 * 72.12901 * 17 15 13 34 34 H 1.09000 * 117.53778 * 355.63656 * 20 18 17 35 35 H 1.08995 * 117.53732 * 140.82398 * 20 18 17 36 36 H 1.09006 * 108.84107 * 139.91688 * 23 21 18 37 37 H 1.08995 * 108.84456 * 258.26782 * 23 21 18 38 38 H 1.08998 * 109.47306 * 38.97733 * 26 24 15 39 39 H 1.09005 * 109.47175 * 158.97526 * 26 24 15 40 40 H 1.08996 * 109.47130 * 278.97510 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1380 -1.7852 -1.2282 6 6 2.3570 0.0119 -2.3592 7 7 2.8933 -0.5940 -3.3959 8 14 2.0351 1.8510 -2.4158 9 1 3.2637 2.5813 -2.0129 10 1 1.6555 2.2449 -3.7966 11 1 0.9300 2.1892 -1.4833 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1584 2.4117 15 6 2.6500 -0.7286 3.5874 16 1 3.6489 -1.1155 3.3856 17 6 1.7284 -1.8911 3.8910 18 6 1.9714 -2.4732 5.2754 19 1 2.0956 -3.5555 5.3094 20 6 1.1948 -1.8250 6.4323 21 6 2.7064 -1.6699 6.3358 22 1 3.2883 -2.2516 7.0508 23 6 3.3174 -0.3290 5.9862 24 6 2.7329 0.2673 4.7232 25 1 3.3545 1.1062 4.4103 26 6 1.3263 0.7862 5.0278 27 1 -0.3633 0.5898 0.8416 28 1 -0.3633 0.4338 -0.9315 29 1 -0.3633 -1.0238 0.0902 30 1 3.1214 -0.0860 -4.1901 31 1 2.2491 -1.6317 1.1525 32 1 0.6954 -1.5491 3.8277 33 1 1.8880 -2.6721 3.1475 34 1 0.5830 -0.9527 6.2023 35 1 0.8031 -2.4833 7.2076 36 1 3.1478 0.3613 6.8126 37 1 4.3915 -0.4560 5.8512 38 1 0.6114 -0.0326 4.9466 39 1 1.2999 1.1926 6.0389 40 1 1.0653 1.5683 4.3149 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931155518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:46 Heat of formation + Delta-G solvation = -48.808212 kcal Electronic energy + Delta-G solvation = -19377.249008 eV Core-core repulsion = 16577.111038 eV Total energy + Delta-G solvation = -2800.137971 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.81289 -39.69289 -36.77997 -34.73321 -34.44534 -32.86775 -31.01458 -28.62378 -27.31229 -26.09331 -23.53022 -22.19388 -22.09863 -21.17948 -19.34006 -18.43647 -17.89585 -17.33254 -17.07449 -16.01958 -15.79927 -15.52294 -14.98540 -14.68949 -14.51303 -14.43875 -14.21971 -13.74893 -13.40575 -13.15053 -13.10812 -12.99940 -12.79447 -12.75231 -12.36968 -12.00093 -11.85712 -11.77863 -11.72263 -11.21173 -11.14685 -10.87620 -10.52230 -10.47938 -10.39845 -9.74990 -8.39944 -6.45300 1.27495 1.32961 1.44746 1.83226 2.26729 2.48160 2.90319 3.04826 3.66017 3.74173 3.84477 4.02338 4.13767 4.23971 4.28413 4.42087 4.45065 4.57970 4.63462 4.71882 4.74790 4.82868 4.88426 4.99976 5.03910 5.05902 5.09499 5.13774 5.21598 5.33007 5.35775 5.36477 5.41091 5.47288 5.54278 5.63838 5.80917 6.12827 6.59521 6.94915 7.21045 7.52072 8.75161 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.038190 B = 0.005563 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.999257 B = 5031.995691 C = 5238.210254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.235 3.765 3 H 0.027 0.973 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.032 3.968 7 N -0.930 5.930 8 Si 0.925 3.075 9 H -0.278 1.278 10 H -0.275 1.275 11 H -0.252 1.252 12 N -0.704 5.704 13 C 0.501 3.499 14 O -0.589 6.589 15 C -0.087 4.087 16 H 0.101 0.899 17 C -0.076 4.076 18 C -0.149 4.149 19 H 0.118 0.882 20 C -0.194 4.194 21 C -0.133 4.133 22 H 0.114 0.886 23 C -0.078 4.078 24 C -0.070 4.070 25 H 0.057 0.943 26 C -0.154 4.154 27 H 0.033 0.967 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.270 0.730 31 H 0.403 0.597 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.218 -3.181 20.053 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.131 3.869 3 H 0.045 0.955 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.168 4.168 7 N -0.569 5.569 8 Si 0.750 3.250 9 H -0.204 1.204 10 H -0.201 1.201 11 H -0.175 1.175 12 N -0.353 5.353 13 C 0.289 3.711 14 O -0.470 6.470 15 C -0.109 4.109 16 H 0.119 0.881 17 C -0.114 4.114 18 C -0.167 4.167 19 H 0.136 0.864 20 C -0.231 4.231 21 C -0.151 4.151 22 H 0.132 0.868 23 C -0.115 4.115 24 C -0.089 4.089 25 H 0.075 0.925 26 C -0.210 4.210 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.238 0.762 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.366 -2.332 19.869 20.052 hybrid contribution 0.091 0.455 -0.898 1.011 sum -1.275 -1.877 18.971 19.107 Atomic orbital electron populations 1.22134 0.97302 1.00930 0.99618 1.18800 0.91780 0.92967 0.83318 0.95546 1.21196 1.44117 0.94807 0.96363 0.92595 1.25600 0.93551 1.02255 0.95390 1.69988 1.42502 1.38349 1.06062 0.86077 0.79707 0.81201 0.78034 1.20420 1.20067 1.17536 1.46393 1.65285 1.14307 1.09331 1.21346 0.77212 0.87140 0.85415 1.90581 1.52826 1.17952 1.85677 1.20607 1.01666 0.96735 0.91865 0.88060 1.20510 0.98335 0.95591 0.96943 1.22010 1.06099 0.99040 0.89545 0.86424 1.23510 0.94703 1.03702 1.01153 1.21676 0.94597 0.97670 1.01178 0.86754 1.20474 0.99937 0.95239 0.95861 1.20171 0.97953 0.96591 0.94141 0.92463 1.22250 0.96656 1.01187 1.00939 0.94768 0.93303 0.92280 0.92069 0.76162 0.92371 0.90090 0.88319 0.87854 0.90288 0.90820 0.91928 0.91853 0.93982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.09 9.16 71.98 0.66 -5.43 16 2 C 0.24 11.20 2.10 44.25 0.09 11.29 16 3 H 0.03 1.39 5.07 -2.39 -0.01 1.38 16 4 C -0.53 -28.59 9.05 25.60 0.23 -28.36 16 5 H 0.06 3.22 8.06 -2.91 -0.02 3.20 16 6 C 0.03 1.83 5.47 84.66 0.46 2.29 16 7 N -0.93 -55.70 13.96 21.45 0.30 -55.40 16 8 Si 0.93 44.76 26.53 68.60 1.82 46.58 16 9 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.25 -11.83 6.17 99.48 0.61 -11.22 16 12 N -0.70 -27.97 4.95 -446.12 -2.21 -30.18 16 13 C 0.50 18.76 6.72 87.66 0.59 19.35 16 14 O -0.59 -26.30 13.41 -3.03 -0.04 -26.34 16 15 C -0.09 -2.37 2.25 -12.62 -0.03 -2.40 16 16 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 17 C -0.08 -1.72 4.39 29.79 0.13 -1.59 16 18 C -0.15 -2.66 6.19 -11.18 -0.07 -2.73 16 19 H 0.12 1.76 8.14 -2.39 -0.02 1.75 16 20 C -0.19 -3.26 9.54 30.58 0.29 -2.97 16 21 C -0.13 -2.18 5.96 -11.88 -0.07 -2.26 16 22 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 23 C -0.08 -1.44 5.39 29.56 0.16 -1.28 16 24 C -0.07 -1.77 2.13 -11.88 -0.03 -1.80 16 25 H 0.06 1.68 7.91 -2.39 -0.02 1.66 16 26 C -0.15 -4.09 7.25 71.98 0.52 -3.57 16 27 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 2.13 7.23 -2.39 -0.02 2.11 16 29 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.40 14.16 8.08 -92.71 -0.75 13.41 16 32 H 0.06 1.46 6.70 -2.39 -0.02 1.45 16 33 H 0.08 1.69 7.75 -2.39 -0.02 1.67 16 34 H 0.10 1.88 4.73 -2.39 -0.01 1.87 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.32 7.70 -2.38 -0.02 1.30 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 1.60 3.79 -2.39 -0.01 1.59 16 39 H 0.06 1.41 7.61 -2.38 -0.02 1.39 16 40 H 0.04 1.41 6.27 -2.39 -0.01 1.39 16 Total: -1.00 -65.00 301.03 3.01 -61.99 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.19 Total: 22.80 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 2.95 Total: -19.45 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -1.91 Total: -85.58 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.04 Total: -26.34 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.82 Total: 46.58 kcal Total: -65.00 3.01 -61.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931155518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.177 kcal (2) G-P(sol) polarization free energy of solvation -64.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds