Wall clock time and date at job start Sun Mar 29 2020 23:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.46499 * 119.99936 * 299.99999 * 12 2 1 14 14 C 1.34777 * 120.00000 * 119.99453 * 12 2 1 15 15 O 1.21274 * 120.00150 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99735 * 180.02562 * 14 12 2 17 17 C 1.52998 * 109.46973 * 180.02562 * 16 14 12 18 18 H 1.09000 * 109.64428 * 304.57845 * 17 16 14 19 19 C 1.53026 * 109.64464 * 65.00031 * 17 16 14 20 20 C 1.50067 * 110.14569 * 169.11850 * 19 17 16 21 21 C 1.29442 * 124.08044 * 342.87232 * 20 19 17 22 22 C 1.50064 * 124.07128 * 0.48836 * 21 20 19 23 23 C 1.53030 * 110.14209 * 342.83270 * 22 21 20 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.46842 * 89.99634 * 13 12 2 29 29 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 30 30 H 1.08998 * 109.46730 * 330.00200 * 13 12 2 31 31 H 1.09002 * 109.47152 * 300.00044 * 16 14 12 32 32 H 1.09000 * 109.47333 * 60.00571 * 16 14 12 33 33 H 1.08997 * 109.35570 * 289.32457 * 19 17 16 34 34 H 1.08997 * 109.35495 * 49.05154 * 19 17 16 35 35 H 1.08010 * 117.95963 * 162.88960 * 20 19 17 36 36 H 1.08002 * 117.96302 * 180.46538 * 21 20 19 37 37 H 1.09000 * 109.35685 * 103.06002 * 22 21 20 38 38 H 1.09005 * 109.35659 * 222.77314 * 22 21 20 39 39 H 1.09006 * 109.66090 * 289.77839 * 23 22 21 40 40 H 1.08999 * 109.63700 * 169.14384 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.0864 1.1255 -1.8913 16 6 3.2950 -0.7457 -3.3141 17 6 4.1455 0.2158 -4.1466 18 1 3.5679 1.1114 -4.3758 19 6 5.4023 0.6010 -3.3632 20 6 6.3674 1.3234 -4.2569 21 6 6.3125 1.3036 -5.5500 22 6 5.2698 0.5640 -6.3360 23 6 4.5769 -0.4719 -5.4481 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 28 1 0.7376 -2.1442 -1.9994 29 1 2.4629 -2.5818 -1.9864 30 1 1.5295 -2.5968 -0.4710 31 1 3.9004 -1.6023 -3.0178 32 1 2.4470 -1.0878 -3.9074 33 1 5.1253 1.2491 -2.5317 34 1 5.8771 -0.3006 -2.9760 35 1 7.1571 1.8953 -3.7923 36 1 7.0636 1.8539 -6.0973 37 1 4.5304 1.2717 -6.7108 38 1 5.7433 0.0572 -7.1769 39 1 5.2692 -1.2829 -5.2219 40 1 3.7004 -0.8670 -5.9617 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931942564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:02 Heat of formation + Delta-G solvation = -40.107292 kcal Electronic energy + Delta-G solvation = -18949.915352 eV Core-core repulsion = 16150.154682 eV Total energy + Delta-G solvation = -2799.760670 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.53130 -37.93612 -35.26803 -32.98477 -32.36235 -30.62803 -29.52932 -26.88234 -25.93097 -25.18558 -23.13007 -21.76319 -20.35130 -18.15091 -17.80852 -16.54985 -16.15951 -15.68847 -15.26904 -14.81001 -14.40036 -14.04142 -13.44418 -13.30277 -12.77111 -12.51515 -12.44504 -12.20306 -12.11566 -11.91962 -11.54986 -11.44167 -11.35326 -11.00703 -10.83171 -10.67750 -10.51045 -10.36464 -10.19758 -10.13813 -9.98700 -9.16166 -8.90424 -8.70288 -8.39533 -7.52575 -6.05377 -4.13417 2.42308 3.28430 3.33702 3.34924 3.48281 4.02367 4.41198 4.78728 4.83180 4.96901 5.24687 5.27627 5.33789 5.43901 5.46433 5.62488 5.69906 5.77566 5.86680 5.90213 5.96515 5.96562 6.07664 6.10279 6.29137 6.40053 6.53176 6.62497 6.78156 6.79152 6.86750 7.10167 7.11494 7.47879 7.57603 7.74693 8.04820 8.23291 8.59876 8.86103 9.14152 9.53187 10.99820 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.033167 B = 0.005014 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.003251 B = 5583.016245 C = 5858.892222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.596 5.596 13 C 0.084 3.916 14 C 0.502 3.498 15 O -0.551 6.551 16 C -0.136 4.136 17 C -0.069 4.069 18 H 0.078 0.922 19 C -0.095 4.095 20 C -0.138 4.138 21 C -0.175 4.175 22 C -0.086 4.086 23 C -0.116 4.116 24 H 0.092 0.908 25 H 0.028 0.972 26 H 0.010 0.990 27 H 0.263 0.737 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.389 -4.683 -14.241 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.327 5.327 13 C -0.060 4.060 14 C 0.289 3.711 15 O -0.431 6.431 16 C -0.176 4.176 17 C -0.087 4.087 18 H 0.097 0.903 19 C -0.132 4.132 20 C -0.156 4.156 21 C -0.193 4.193 22 C -0.123 4.123 23 C -0.153 4.153 24 H 0.111 0.889 25 H 0.047 0.953 26 H 0.029 0.971 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.437 -3.954 -13.963 15.497 hybrid contribution 0.321 -0.583 0.917 1.133 sum 5.758 -4.538 -13.046 14.965 Atomic orbital electron populations 1.22076 0.98340 0.99294 1.00695 1.18905 0.90785 0.94549 0.80071 0.91942 1.21289 1.31795 1.12979 0.90380 0.92372 1.24892 0.94959 0.94984 0.98929 1.69872 1.36342 1.22575 1.23806 0.86568 0.79229 0.79573 0.82071 1.20268 1.21173 1.20259 1.48259 1.49198 1.11564 1.23664 1.21580 0.98700 0.83482 1.02227 1.20448 0.79051 0.87208 0.84377 1.90601 1.58236 1.17249 1.76994 1.21783 1.00536 0.99510 0.95755 1.20924 0.95906 0.98179 0.93730 0.90321 1.20676 0.93514 1.00379 0.98625 1.22180 0.99141 0.99159 0.95121 1.21951 0.99996 1.01875 0.95490 1.20391 0.96891 0.97473 0.97588 1.21688 0.99970 0.97836 0.95844 0.88931 0.95255 0.97110 0.92663 0.94046 0.92820 0.90254 0.89602 0.89691 0.88470 0.91518 0.88362 0.88566 0.91194 0.91588 0.91873 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.97 37.16 0.33 -3.20 16 2 C 0.26 6.62 2.64 -69.08 -0.18 6.44 16 3 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 4 C -0.53 -14.25 7.99 -34.44 -0.28 -14.53 16 5 H 0.06 1.55 7.33 -52.49 -0.38 1.16 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.27 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.60 -12.71 2.75 -175.27 -0.48 -13.19 16 13 C 0.08 1.41 9.24 59.85 0.55 1.96 16 14 C 0.50 10.23 7.43 -10.99 -0.08 10.15 16 15 O -0.55 -13.28 13.36 5.56 0.07 -13.21 16 16 C -0.14 -1.98 3.73 -27.89 -0.10 -2.09 16 17 C -0.07 -0.97 1.88 -90.40 -0.17 -1.14 16 18 H 0.08 1.25 7.96 -51.93 -0.41 0.84 16 19 C -0.10 -1.43 5.03 -28.18 -0.14 -1.58 16 20 C -0.14 -1.83 9.80 -35.90 -0.35 -2.18 16 21 C -0.18 -2.05 9.80 -35.90 -0.35 -2.41 16 22 C -0.09 -0.91 6.12 -28.17 -0.17 -1.08 16 23 C -0.12 -1.27 5.31 -26.51 -0.14 -1.41 16 24 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 25 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 26 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.72 6.44 -51.93 -0.33 0.39 16 30 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 31 H 0.09 1.13 7.37 -51.93 -0.38 0.74 16 32 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 33 H 0.10 1.79 6.22 -51.93 -0.32 1.46 16 34 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.10 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -30.28 313.96 -7.88 -38.16 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.63 Total: 1.47 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.18 Total: -9.37 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.14 Total: -37.84 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.07 Total: -13.21 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.28 -7.88 -38.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931942564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.945 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds