Wall clock time and date at job start Sun Mar 29 2020 23:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.46499 * 119.99936 * 299.99999 * 12 2 1 14 14 C 1.34777 * 120.00000 * 119.99453 * 12 2 1 15 15 O 1.21274 * 120.00150 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99735 * 180.02562 * 14 12 2 17 17 C 1.52998 * 109.46973 * 180.02562 * 16 14 12 18 18 H 1.09000 * 109.64428 * 304.57845 * 17 16 14 19 19 C 1.53026 * 109.64464 * 65.00031 * 17 16 14 20 20 C 1.50067 * 110.14569 * 169.11850 * 19 17 16 21 21 C 1.29442 * 124.08044 * 342.87232 * 20 19 17 22 22 C 1.50064 * 124.07128 * 0.48836 * 21 20 19 23 23 C 1.53030 * 110.14209 * 342.83270 * 22 21 20 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.46842 * 89.99634 * 13 12 2 29 29 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 30 30 H 1.08998 * 109.46730 * 330.00200 * 13 12 2 31 31 H 1.09002 * 109.47152 * 300.00044 * 16 14 12 32 32 H 1.09000 * 109.47333 * 60.00571 * 16 14 12 33 33 H 1.08997 * 109.35570 * 289.32457 * 19 17 16 34 34 H 1.08997 * 109.35495 * 49.05154 * 19 17 16 35 35 H 1.08010 * 117.95963 * 162.88960 * 20 19 17 36 36 H 1.08002 * 117.96302 * 180.46538 * 21 20 19 37 37 H 1.09000 * 109.35685 * 103.06002 * 22 21 20 38 38 H 1.09005 * 109.35659 * 222.77314 * 22 21 20 39 39 H 1.09006 * 109.66090 * 289.77839 * 23 22 21 40 40 H 1.08999 * 109.63700 * 169.14384 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.0864 1.1255 -1.8913 16 6 3.2950 -0.7457 -3.3141 17 6 4.1455 0.2158 -4.1466 18 1 3.5679 1.1114 -4.3758 19 6 5.4023 0.6010 -3.3632 20 6 6.3674 1.3234 -4.2569 21 6 6.3125 1.3036 -5.5500 22 6 5.2698 0.5640 -6.3360 23 6 4.5769 -0.4719 -5.4481 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 28 1 0.7376 -2.1442 -1.9994 29 1 2.4629 -2.5818 -1.9864 30 1 1.5295 -2.5968 -0.4710 31 1 3.9004 -1.6023 -3.0178 32 1 2.4470 -1.0878 -3.9074 33 1 5.1253 1.2491 -2.5317 34 1 5.8771 -0.3006 -2.9760 35 1 7.1571 1.8953 -3.7923 36 1 7.0636 1.8539 -6.0973 37 1 4.5304 1.2717 -6.7108 38 1 5.7433 0.0572 -7.1769 39 1 5.2692 -1.2829 -5.2219 40 1 3.7004 -0.8670 -5.9617 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931942564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:02 Heat of formation + Delta-G solvation = -57.209627 kcal Electronic energy + Delta-G solvation = -18950.656965 eV Core-core repulsion = 16150.154682 eV Total energy + Delta-G solvation = -2800.502283 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.98526 -39.14594 -37.04492 -34.82266 -33.65336 -31.59357 -31.35480 -28.14585 -27.42126 -27.26491 -24.16873 -23.21346 -21.78043 -19.74525 -18.83172 -18.49246 -17.72023 -17.06003 -16.76292 -16.28619 -16.09257 -15.15704 -14.89241 -14.54300 -14.21877 -13.91658 -13.87305 -13.51665 -13.46896 -13.19411 -13.06188 -12.85847 -12.77147 -12.74146 -12.57750 -12.38749 -12.18897 -12.10383 -11.57258 -11.38391 -11.18814 -10.96866 -10.57368 -10.33424 -9.80994 -9.25502 -8.13971 -6.30814 1.40875 1.43381 1.45085 1.50816 1.91469 2.35300 2.55829 3.13603 3.73720 3.79618 3.89401 4.15376 4.29711 4.42946 4.49746 4.52741 4.62496 4.74820 4.77457 4.80249 4.80368 4.87513 4.90649 4.99412 5.06722 5.08457 5.10215 5.15585 5.28227 5.43729 5.49417 5.55468 5.63553 5.69773 5.82698 6.06783 6.12488 6.18169 6.77778 6.92342 7.35130 7.57458 8.90067 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.033167 B = 0.005014 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.003251 B = 5583.016245 C = 5858.892222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.260 3.740 3 H 0.005 0.995 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.261 1.261 12 N -0.606 5.606 13 C 0.080 3.920 14 C 0.489 3.511 15 O -0.601 6.601 16 C -0.121 4.121 17 C -0.067 4.067 18 H 0.053 0.947 19 C -0.093 4.093 20 C -0.168 4.168 21 C -0.159 4.159 22 C -0.091 4.091 23 C -0.108 4.108 24 H 0.065 0.935 25 H 0.046 0.954 26 H 0.018 0.982 27 H 0.264 0.736 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.901 -7.360 -16.277 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.158 3.842 3 H 0.023 0.977 4 C -0.577 4.577 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.186 1.186 12 N -0.336 5.336 13 C -0.062 4.062 14 C 0.278 3.722 15 O -0.484 6.484 16 C -0.161 4.161 17 C -0.086 4.086 18 H 0.071 0.929 19 C -0.130 4.130 20 C -0.186 4.186 21 C -0.177 4.177 22 C -0.128 4.128 23 C -0.145 4.145 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.132 0.868 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.945 -6.672 -16.027 18.350 hybrid contribution 0.177 0.317 1.501 1.544 sum 6.122 -6.355 -14.526 16.996 Atomic orbital electron populations 1.21853 0.97353 0.99978 0.99719 1.18478 0.91488 0.92167 0.82071 0.97666 1.21565 1.31834 1.13056 0.91212 0.92085 1.25758 0.95089 0.95654 1.02082 1.70025 1.37389 1.23936 1.24419 0.85513 0.78363 0.79044 0.78113 1.20319 1.20952 1.18563 1.48296 1.49407 1.13429 1.22513 1.21837 1.01316 0.80617 1.02453 1.21578 0.78024 0.86928 0.85621 1.90589 1.59692 1.19813 1.78262 1.21807 1.01863 0.99439 0.92969 1.20906 0.94809 0.97580 0.95329 0.92854 1.20545 0.94764 0.99777 0.97890 1.22131 0.99736 1.00946 0.95835 1.22280 1.00008 1.00437 0.94945 1.20517 0.96675 0.97581 0.98037 1.21664 1.01164 0.97844 0.93842 0.91608 0.93503 0.96337 0.92702 0.91732 0.88918 0.91657 0.87164 0.86450 0.93151 0.91272 0.88458 0.86758 0.90788 0.88875 0.90796 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.45 8.97 71.98 0.65 -5.81 16 2 C 0.26 13.87 2.64 44.24 0.12 13.98 16 3 H 0.01 0.34 6.90 -2.39 -0.02 0.33 16 4 C -0.54 -29.70 7.99 25.60 0.20 -29.50 16 5 H 0.06 3.25 7.33 -2.91 -0.02 3.23 16 6 C 0.01 0.75 5.30 84.66 0.45 1.20 16 7 N -0.92 -53.96 11.32 21.45 0.24 -53.72 16 8 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 12 N -0.61 -25.79 2.75 -826.82 -2.28 -28.07 16 13 C 0.08 2.47 9.24 127.77 1.18 3.65 16 14 C 0.49 20.11 7.43 87.66 0.65 20.76 16 15 O -0.60 -30.74 13.36 -3.01 -0.04 -30.78 16 16 C -0.12 -3.26 3.73 29.85 0.11 -3.15 16 17 C -0.07 -1.81 1.88 -10.65 -0.02 -1.83 16 18 H 0.05 1.70 7.96 -2.39 -0.02 1.68 16 19 C -0.09 -2.85 5.03 29.66 0.15 -2.70 16 20 C -0.17 -4.43 9.80 27.04 0.27 -4.17 16 21 C -0.16 -3.39 9.80 27.04 0.27 -3.12 16 22 C -0.09 -1.59 6.12 29.66 0.18 -1.41 16 23 C -0.11 -1.97 5.31 30.74 0.16 -1.80 16 24 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 25 H 0.05 2.09 7.67 -2.39 -0.02 2.07 16 26 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.09 2.12 6.44 -2.39 -0.02 2.10 16 30 H 0.06 2.21 7.02 -2.39 -0.02 2.20 16 31 H 0.11 2.48 7.37 -2.39 -0.02 2.46 16 32 H 0.12 2.44 8.11 -2.39 -0.02 2.43 16 33 H 0.05 2.01 6.22 -2.39 -0.01 1.99 16 34 H 0.07 1.99 8.08 -2.39 -0.02 1.97 16 35 H 0.10 2.48 8.06 -2.91 -0.02 2.45 16 36 H 0.11 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.07 1.23 8.12 -2.38 -0.02 1.21 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -70.45 313.96 5.31 -65.14 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.99 Total: 15.81 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 4.36 Total: -13.90 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -2.03 Total: -81.78 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.04 Total: -30.78 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -70.45 5.31 -65.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931942564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.930 kcal (2) G-P(sol) polarization free energy of solvation -70.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds