Wall clock time and date at job start Sun Mar 29 2020 23:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.76846 * 2 1 4 4 C 1.53675 * 109.52872 * 238.77447 * 2 1 3 5 5 C 1.52710 * 109.80038 * 184.98146 * 4 2 1 6 6 H 1.09004 * 115.38578 * 232.90360 * 5 4 2 7 7 C 1.53649 * 115.15492 * 91.49696 * 5 4 2 8 8 C 1.52063 * 120.52692 * 23.15286 * 5 4 2 9 9 H 1.09000 * 115.93201 * 208.89809 * 8 5 4 10 10 C 1.52072 * 120.02214 * 353.61960 * 8 5 4 11 11 C 1.52880 * 110.51350 * 21.69560 * 10 8 5 12 12 H 1.08999 * 109.61636 * 65.01895 * 11 10 8 13 13 C 1.50699 * 109.61971 * 185.37777 * 11 10 8 14 14 O 1.21280 * 119.99406 * 36.06033 * 13 11 10 15 15 N 1.34769 * 120.00162 * 216.05520 * 13 11 10 16 16 C 1.46501 * 119.99856 * 180.27854 * 15 13 11 17 17 C 1.53004 * 109.46926 * 179.72363 * 16 15 13 18 18 C 1.50707 * 109.46839 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99760 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99586 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00373 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99664 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47180 * 60.00115 * 22 20 18 24 24 H 1.48500 * 109.47039 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47392 * 300.00085 * 22 20 18 26 26 H 1.09000 * 109.46603 * 305.55042 * 1 2 3 27 27 H 1.08998 * 109.47154 * 65.55278 * 1 2 3 28 28 H 1.08993 * 109.47030 * 185.55211 * 1 2 3 29 29 H 1.08994 * 108.15393 * 65.71175 * 4 2 1 30 30 H 1.09007 * 110.79266 * 305.87438 * 4 2 1 31 31 H 1.09004 * 117.53792 * 140.54613 * 7 5 4 32 32 H 1.08999 * 117.53279 * 355.30345 * 7 5 4 33 33 H 1.09000 * 109.26681 * 261.43294 * 10 8 5 34 34 H 1.09001 * 109.24314 * 141.94176 * 10 8 5 35 35 H 0.96998 * 120.00300 * 359.97438 * 15 13 11 36 36 H 1.09000 * 109.47171 * 299.72241 * 16 15 13 37 37 H 1.08999 * 109.47534 * 59.72319 * 16 15 13 38 38 H 1.08994 * 109.47426 * 299.99671 * 17 16 15 39 39 H 1.08997 * 109.46777 * 60.00387 * 17 16 15 40 40 H 0.96996 * 120.00003 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8986 1.0257 0.0000 4 6 2.0437 -0.7508 -1.2385 5 6 3.5657 -0.8622 -1.1816 6 1 4.0936 -0.5082 -2.0671 7 6 4.1027 -2.1331 -0.5053 8 6 4.2976 -0.7713 0.1482 9 1 5.3127 -0.3763 0.1076 10 6 3.5324 -0.4238 1.4156 11 6 2.0448 -0.7319 1.2448 12 1 1.9053 -1.8059 1.1216 13 6 1.2875 -0.2593 2.4589 14 8 1.6243 0.7588 3.0253 15 7 0.2359 -0.9681 2.9153 16 6 -0.5040 -0.5054 4.0920 17 6 -1.6448 -1.4796 4.3926 18 6 -2.4056 -1.0040 5.6035 19 1 -2.1057 -0.0973 6.1078 20 6 -3.4845 -1.7264 6.0673 21 7 -3.8494 -2.8307 5.4535 22 14 -4.4271 -1.1372 7.5686 23 1 -4.9864 0.2127 7.3037 24 1 -5.5336 -2.0833 7.8611 25 1 -3.5102 -1.0729 8.7350 26 1 -0.3632 0.5975 0.8361 27 1 -0.3633 0.4253 -0.9355 28 1 -0.3633 -1.0228 0.0994 29 1 1.7557 -0.1833 -2.1234 30 1 1.6102 -1.7495 -1.2930 31 1 4.9772 -2.6090 -0.9491 32 1 3.3763 -2.8092 -0.0543 33 1 3.6574 0.6372 1.6318 34 1 3.9278 -1.0091 2.2458 35 1 -0.0337 -1.7821 2.4621 36 1 0.1684 -0.4579 4.9486 37 1 -0.9143 0.4854 3.8969 38 1 -2.3173 -1.5271 3.5362 39 1 -1.2345 -2.4704 4.5879 40 1 -4.6086 -3.3387 5.7796 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935339406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:43 Heat of formation + Delta-G solvation = -48.443829 kcal Electronic energy + Delta-G solvation = -18647.389521 eV Core-core repulsion = 15847.267351 eV Total energy + Delta-G solvation = -2800.122170 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.49806 -38.44056 -34.83667 -34.36638 -32.77815 -31.36710 -29.56428 -27.38436 -25.66050 -24.13872 -21.81650 -21.42392 -20.88122 -19.92507 -18.57103 -17.11064 -16.38822 -15.65152 -15.33036 -14.84890 -14.46405 -14.32231 -14.04085 -13.73057 -13.50720 -12.92156 -12.65038 -12.42415 -12.30066 -12.27256 -11.63224 -11.49658 -11.20727 -11.07268 -11.00626 -10.77722 -10.67148 -10.63959 -10.30301 -9.88309 -9.83379 -9.68535 -9.40029 -9.07672 -8.51571 -8.32546 -6.08982 -4.11866 3.05708 3.31342 3.35111 3.38124 3.55226 3.75347 4.41141 4.42705 4.57414 4.70266 4.78528 4.90258 5.00918 5.12946 5.27979 5.31226 5.34219 5.46230 5.56293 5.61086 5.71925 5.77807 5.84487 5.87881 5.98916 6.06986 6.11905 6.18247 6.27708 6.33281 6.36932 6.39766 6.75705 6.96900 7.52405 7.62550 7.89220 8.06873 8.28860 8.71516 8.94038 9.52941 11.02569 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.042551 B = 0.004018 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.871010 B = 6966.540965 C = 7103.281556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.075 4.075 3 H 0.081 0.919 4 C -0.083 4.083 5 C -0.149 4.149 6 H 0.101 0.899 7 C -0.187 4.187 8 C -0.134 4.134 9 H 0.099 0.901 10 C -0.074 4.074 11 C -0.104 4.104 12 H 0.085 0.915 13 C 0.514 3.486 14 O -0.553 6.553 15 N -0.721 5.721 16 C 0.121 3.879 17 C 0.013 3.987 18 C -0.522 4.522 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.396 0.604 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.181 1.262 -14.425 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.094 4.094 3 H 0.099 0.901 4 C -0.120 4.120 5 C -0.168 4.168 6 H 0.119 0.881 7 C -0.224 4.224 8 C -0.153 4.153 9 H 0.118 0.882 10 C -0.111 4.111 11 C -0.125 4.125 12 H 0.104 0.896 13 C 0.299 3.701 14 O -0.431 6.431 15 N -0.371 5.371 16 C -0.001 4.001 17 C -0.024 4.024 18 C -0.561 4.561 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.230 0.770 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.268 1.839 -13.982 19.363 hybrid contribution -0.690 -0.280 0.600 0.957 sum 12.578 1.559 -13.382 18.431 Atomic orbital electron populations 1.21943 0.94485 1.02481 1.02289 1.21224 0.95781 0.99636 0.92723 0.90103 1.21285 0.92395 1.00628 0.97730 1.22262 0.95779 1.02351 0.96359 0.88098 1.23182 1.03534 0.90900 1.04806 1.21820 0.99874 1.00239 0.93339 0.88246 1.20704 0.91807 1.03049 0.95559 1.21434 0.95976 1.01239 0.93899 0.89625 1.20431 0.80654 0.84064 0.84918 1.90653 1.67815 1.25166 1.59495 1.46417 1.31164 1.27688 1.31824 1.21699 0.94079 0.99185 0.85161 1.19310 0.91657 0.94092 0.97348 1.21025 1.13315 1.09541 1.12222 0.92341 1.24987 0.97160 0.94850 0.97217 1.69942 1.27341 1.15538 1.40515 0.86579 0.79396 0.78581 0.83020 1.20110 1.21236 1.20114 0.91963 0.92350 0.92252 0.91466 0.91083 0.89173 0.88614 0.89960 0.91287 0.77023 0.92697 0.92705 0.95981 0.96010 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.38 37.16 0.31 -1.52 16 2 C -0.07 -0.84 2.44 -90.11 -0.22 -1.07 16 3 H 0.08 0.99 8.05 -51.93 -0.42 0.57 16 4 C -0.08 -0.76 5.12 -26.53 -0.14 -0.89 16 5 C -0.15 -1.33 6.22 -90.91 -0.57 -1.89 16 6 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 7 C -0.19 -1.63 9.61 -26.75 -0.26 -1.89 16 8 C -0.13 -1.30 6.00 -91.92 -0.55 -1.85 16 9 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 10 C -0.07 -0.88 5.01 -27.27 -0.14 -1.01 16 11 C -0.10 -1.31 1.97 -91.68 -0.18 -1.49 16 12 H 0.09 0.96 7.05 -51.93 -0.37 0.60 16 13 C 0.51 8.68 5.23 -10.99 -0.06 8.63 16 14 O -0.55 -11.45 16.19 5.56 0.09 -11.36 16 15 N -0.72 -12.60 5.23 -60.29 -0.32 -12.92 16 16 C 0.12 2.60 5.61 -4.04 -0.02 2.57 16 17 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 18 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 22 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H 0.06 0.90 7.14 -51.93 -0.37 0.53 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.62 8.03 -51.93 -0.42 0.20 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.10 0.86 7.26 -51.93 -0.38 0.48 16 33 H 0.08 1.09 7.66 -51.93 -0.40 0.70 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.40 6.07 8.44 -40.82 -0.34 5.72 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 320.06 15.07 4.82 4.82 Total: -1.00 -30.72 320.06 -8.94 -39.66 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.88 Total: 2.32 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -2.37 Total: -13.51 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.42 Total: -38.34 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.72 -8.94 -39.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935339406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.783 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds