Wall clock time and date at job start Sun Mar 29 2020 23:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.76846 * 2 1 4 4 C 1.53675 * 109.52872 * 238.77447 * 2 1 3 5 5 C 1.52710 * 109.80038 * 184.98146 * 4 2 1 6 6 H 1.09004 * 115.38578 * 232.90360 * 5 4 2 7 7 C 1.53649 * 115.15492 * 91.49696 * 5 4 2 8 8 C 1.52063 * 120.52692 * 23.15286 * 5 4 2 9 9 H 1.09000 * 115.93201 * 208.89809 * 8 5 4 10 10 C 1.52072 * 120.02214 * 353.61960 * 8 5 4 11 11 C 1.52880 * 110.51350 * 21.69560 * 10 8 5 12 12 H 1.08999 * 109.61636 * 65.01895 * 11 10 8 13 13 C 1.50699 * 109.61971 * 185.37777 * 11 10 8 14 14 O 1.21280 * 119.99406 * 36.06033 * 13 11 10 15 15 N 1.34769 * 120.00162 * 216.05520 * 13 11 10 16 16 C 1.46501 * 119.99856 * 180.27854 * 15 13 11 17 17 C 1.53004 * 109.46926 * 179.72363 * 16 15 13 18 18 C 1.50707 * 109.46839 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99760 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99586 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00373 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99664 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47180 * 60.00115 * 22 20 18 24 24 H 1.48500 * 109.47039 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47392 * 300.00085 * 22 20 18 26 26 H 1.09000 * 109.46603 * 305.55042 * 1 2 3 27 27 H 1.08998 * 109.47154 * 65.55278 * 1 2 3 28 28 H 1.08993 * 109.47030 * 185.55211 * 1 2 3 29 29 H 1.08994 * 108.15393 * 65.71175 * 4 2 1 30 30 H 1.09007 * 110.79266 * 305.87438 * 4 2 1 31 31 H 1.09004 * 117.53792 * 140.54613 * 7 5 4 32 32 H 1.08999 * 117.53279 * 355.30345 * 7 5 4 33 33 H 1.09000 * 109.26681 * 261.43294 * 10 8 5 34 34 H 1.09001 * 109.24314 * 141.94176 * 10 8 5 35 35 H 0.96998 * 120.00300 * 359.97438 * 15 13 11 36 36 H 1.09000 * 109.47171 * 299.72241 * 16 15 13 37 37 H 1.08999 * 109.47534 * 59.72319 * 16 15 13 38 38 H 1.08994 * 109.47426 * 299.99671 * 17 16 15 39 39 H 1.08997 * 109.46777 * 60.00387 * 17 16 15 40 40 H 0.96996 * 120.00003 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8986 1.0257 0.0000 4 6 2.0437 -0.7508 -1.2385 5 6 3.5657 -0.8622 -1.1816 6 1 4.0936 -0.5082 -2.0671 7 6 4.1027 -2.1331 -0.5053 8 6 4.2976 -0.7713 0.1482 9 1 5.3127 -0.3763 0.1076 10 6 3.5324 -0.4238 1.4156 11 6 2.0448 -0.7319 1.2448 12 1 1.9053 -1.8059 1.1216 13 6 1.2875 -0.2593 2.4589 14 8 1.6243 0.7588 3.0253 15 7 0.2359 -0.9681 2.9153 16 6 -0.5040 -0.5054 4.0920 17 6 -1.6448 -1.4796 4.3926 18 6 -2.4056 -1.0040 5.6035 19 1 -2.1057 -0.0973 6.1078 20 6 -3.4845 -1.7264 6.0673 21 7 -3.8494 -2.8307 5.4535 22 14 -4.4271 -1.1372 7.5686 23 1 -4.9864 0.2127 7.3037 24 1 -5.5336 -2.0833 7.8611 25 1 -3.5102 -1.0729 8.7350 26 1 -0.3632 0.5975 0.8361 27 1 -0.3633 0.4253 -0.9355 28 1 -0.3633 -1.0228 0.0994 29 1 1.7557 -0.1833 -2.1234 30 1 1.6102 -1.7495 -1.2930 31 1 4.9772 -2.6090 -0.9491 32 1 3.3763 -2.8092 -0.0543 33 1 3.6574 0.6372 1.6318 34 1 3.9278 -1.0091 2.2458 35 1 -0.0337 -1.7821 2.4621 36 1 0.1684 -0.4579 4.9486 37 1 -0.9143 0.4854 3.8969 38 1 -2.3173 -1.5271 3.5362 39 1 -1.2345 -2.4704 4.5879 40 1 -4.6086 -3.3387 5.7796 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935339406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:42 Heat of formation + Delta-G solvation = -66.415286 kcal Electronic energy + Delta-G solvation = -18648.168822 eV Core-core repulsion = 15847.267351 eV Total energy + Delta-G solvation = -2800.901471 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.60192 -39.61649 -36.60004 -35.34204 -34.73354 -32.38078 -31.40085 -28.22297 -27.25653 -25.58766 -23.14408 -22.44199 -22.19333 -21.19243 -19.48080 -18.62321 -18.15330 -16.86738 -16.66749 -16.52777 -16.05777 -15.47518 -15.18317 -14.79112 -14.67883 -14.36612 -14.23430 -13.79961 -13.32772 -13.21584 -13.13610 -12.93332 -12.58386 -12.53620 -12.31301 -12.24071 -11.95201 -11.70385 -11.64187 -11.56350 -11.46649 -10.74644 -10.60825 -10.59805 -10.41699 -10.00545 -8.24791 -6.35526 1.41069 1.43260 1.51329 1.66818 2.26266 2.45445 2.88068 3.09801 3.54800 3.71096 3.74685 3.97720 4.07329 4.13420 4.20521 4.34887 4.47044 4.48957 4.51660 4.53228 4.71396 4.81757 4.83532 4.92500 4.94183 5.00868 5.09940 5.17170 5.23112 5.27935 5.32467 5.35292 5.38886 5.47578 5.50971 5.56999 5.77782 6.15486 6.64601 6.77256 7.30015 7.33836 8.86788 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.042551 B = 0.004018 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.871010 B = 6966.540965 C = 7103.281556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.070 4.070 3 H 0.068 0.932 4 C -0.078 4.078 5 C -0.147 4.147 6 H 0.117 0.883 7 C -0.180 4.180 8 C -0.145 4.145 9 H 0.109 0.891 10 C -0.071 4.071 11 C -0.095 4.095 12 H 0.106 0.894 13 C 0.514 3.486 14 O -0.593 6.593 15 N -0.716 5.716 16 C 0.140 3.860 17 C 0.025 3.975 18 C -0.550 4.550 19 H 0.057 0.943 20 C 0.009 3.991 21 N -0.925 5.925 22 Si 0.964 3.036 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.269 1.269 26 H 0.029 0.971 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.409 0.591 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.009 0.991 39 H 0.008 0.992 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.662 0.768 -15.646 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.089 4.089 3 H 0.087 0.913 4 C -0.115 4.115 5 C -0.165 4.165 6 H 0.135 0.865 7 C -0.217 4.217 8 C -0.163 4.163 9 H 0.127 0.873 10 C -0.109 4.109 11 C -0.116 4.116 12 H 0.124 0.876 13 C 0.302 3.698 14 O -0.474 6.474 15 N -0.366 5.366 16 C 0.017 3.983 17 C -0.013 4.013 18 C -0.588 4.588 19 H 0.075 0.925 20 C -0.190 4.190 21 N -0.565 5.565 22 Si 0.788 3.212 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.194 1.194 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.244 0.756 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.027 0.973 39 H 0.026 0.974 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.760 1.330 -15.228 20.567 hybrid contribution -0.829 -0.117 0.970 1.281 sum 12.931 1.213 -14.258 19.286 Atomic orbital electron populations 1.21932 0.94910 1.02363 1.01861 1.21207 0.95336 0.99242 0.93165 0.91325 1.21278 0.92629 1.00976 0.96660 1.22357 0.95565 1.02306 0.96257 0.86500 1.23256 1.03980 0.90417 1.04007 1.21754 1.00192 1.01785 0.92603 0.87254 1.20642 0.91509 1.01737 0.97000 1.21472 0.95753 1.02385 0.92018 0.87619 1.21239 0.79954 0.83111 0.85510 1.90631 1.68801 1.26994 1.60985 1.46251 1.31203 1.28310 1.30849 1.21190 0.93070 0.97712 0.86363 1.19111 0.92123 0.93978 0.96051 1.21443 1.14180 1.09809 1.13382 0.92480 1.25849 0.98021 0.94878 1.00221 1.70044 1.27899 1.16523 1.42020 0.85517 0.78078 0.78334 0.79241 1.19367 1.20447 1.19398 0.95216 0.90548 0.91595 0.89965 0.90086 0.87709 0.88752 0.91968 0.91869 0.75568 0.93881 0.93886 0.97269 0.97372 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.38 71.98 0.60 -2.88 16 2 C -0.07 -1.50 2.44 -10.47 -0.03 -1.52 16 3 H 0.07 1.64 8.05 -2.39 -0.02 1.62 16 4 C -0.08 -1.19 5.12 30.72 0.16 -1.03 16 5 C -0.15 -2.15 6.22 -10.98 -0.07 -2.21 16 6 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 7 C -0.18 -2.58 9.61 30.58 0.29 -2.29 16 8 C -0.15 -2.51 6.00 -11.64 -0.07 -2.58 16 9 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 10 C -0.07 -1.65 5.01 30.25 0.15 -1.50 16 11 C -0.10 -2.31 1.97 -11.48 -0.02 -2.33 16 12 H 0.11 2.16 7.05 -2.39 -0.02 2.15 16 13 C 0.51 17.58 5.23 87.66 0.46 18.04 16 14 O -0.59 -25.32 16.19 -3.03 -0.05 -25.37 16 15 N -0.72 -25.34 5.23 -463.07 -2.42 -27.76 16 16 C 0.14 6.20 5.61 86.38 0.48 6.68 16 17 C 0.02 1.27 5.09 29.85 0.15 1.42 16 18 C -0.55 -31.06 9.11 25.60 0.23 -30.83 16 19 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 20 C 0.01 0.52 5.46 84.65 0.46 0.98 16 21 N -0.93 -54.35 13.29 21.45 0.28 -54.07 16 22 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 H 0.03 0.86 7.14 -2.39 -0.02 0.84 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.12 8.03 -2.38 -0.02 1.10 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.40 7.26 -2.39 -0.02 1.38 16 33 H 0.06 1.69 7.66 -2.39 -0.02 1.67 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.41 12.43 8.44 -92.71 -0.78 11.65 16 36 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -66.31 320.06 2.87 -63.43 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.22 Total: 17.98 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 2.81 Total: -20.04 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -2.14 Total: -81.83 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.05 Total: -25.37 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -66.31 2.87 -63.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935339406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.981 kcal (2) G-P(sol) polarization free energy of solvation -66.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds