Wall clock time and date at job start Sun Mar 29 2020 23:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 13 13 O 1.21282 * 119.99544 * 119.99884 * 12 2 1 14 14 N 1.34774 * 120.00011 * 300.00244 * 12 2 1 15 15 C 1.46500 * 119.99881 * 179.97438 * 14 12 2 16 16 H 1.09003 * 112.88500 * 26.84946 * 15 14 12 17 17 C 1.53958 * 113.66352 * 255.49597 * 15 14 12 18 18 C 1.53236 * 86.24765 * 218.96355 * 17 15 14 19 19 H 1.08999 * 111.34592 * 275.49524 * 18 17 15 20 20 C 1.50517 * 115.71018 * 147.24533 * 18 17 15 21 21 C 1.51629 * 114.39419 * 290.09290 * 20 18 17 22 22 C 1.52602 * 111.07323 * 313.08859 * 21 20 18 23 23 C 1.52986 * 108.83428 * 63.69801 * 22 21 20 24 24 C 1.52536 * 87.67806 * 26.89082 * 18 17 15 25 25 H 1.08996 * 113.95205 * 218.48085 * 24 18 17 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 30 30 H 0.96998 * 120.00125 * 0.02562 * 14 12 2 31 31 H 1.08997 * 113.74931 * 333.29828 * 17 15 14 32 32 H 1.08997 * 113.74717 * 104.52555 * 17 15 14 33 33 H 1.09005 * 108.49636 * 51.36378 * 20 18 17 34 34 H 1.08997 * 108.49649 * 168.82228 * 20 18 17 35 35 H 1.09003 * 109.15709 * 73.49558 * 21 20 18 36 36 H 1.08996 * 109.15955 * 192.67617 * 21 20 18 37 37 H 1.08997 * 109.57593 * 183.49888 * 22 21 20 38 38 H 1.08997 * 109.57608 * 303.76155 * 22 21 20 39 39 H 1.09001 * 109.51716 * 56.25626 * 23 22 21 40 40 H 1.08999 * 109.51651 * 176.41747 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 2.1946 -0.9408 3.6508 16 1 3.1284 -1.4764 3.4797 17 6 1.1190 -1.7845 4.3590 18 6 1.7433 -1.2965 5.6706 19 1 2.5938 -1.9142 5.9591 20 6 0.7887 -1.1136 6.8198 21 6 -0.1681 0.0517 6.6598 22 6 0.5694 1.3093 6.2088 23 6 1.1664 1.0612 4.8222 24 6 2.2083 -0.0555 4.9153 25 1 3.2006 0.2918 5.2031 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.7089 1.1612 -3.4844 30 1 1.1487 0.5385 2.5436 31 1 0.1026 -1.4260 4.1966 32 1 1.2230 -2.8568 4.1937 33 1 0.2051 -2.0272 6.9334 34 1 1.3686 -0.9624 7.7303 35 1 -0.9239 -0.2054 5.9175 36 1 -0.6571 0.2467 7.6142 37 1 -0.1288 2.1449 6.1615 38 1 1.3663 1.5387 6.9160 39 1 0.3757 0.7649 4.1330 40 1 1.6417 1.9735 4.4619 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119441075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:54 Heat of formation + Delta-G solvation = -41.918288 kcal Electronic energy + Delta-G solvation = -19088.978477 eV Core-core repulsion = 16289.139276 eV Total energy + Delta-G solvation = -2799.839201 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.77099 -38.23456 -34.69028 -33.67187 -32.57848 -30.98919 -30.05984 -26.27182 -25.10133 -24.34586 -22.97985 -22.03331 -20.56660 -19.22981 -17.75085 -16.49707 -16.16265 -16.01348 -14.98702 -14.71419 -14.57576 -13.99857 -13.93416 -13.73208 -13.06013 -12.74650 -12.57859 -12.40952 -11.84537 -11.59350 -11.47851 -11.41939 -11.12330 -10.98601 -10.93055 -10.67181 -10.63546 -10.22269 -10.18818 -9.99197 -9.89062 -9.82976 -8.93049 -8.53521 -8.29241 -8.25930 -5.99370 -4.02126 3.36254 3.41729 3.48991 3.77814 4.02558 4.41665 4.48045 4.51085 4.66725 4.91689 4.98358 5.07403 5.20181 5.32872 5.33950 5.39297 5.53117 5.63690 5.76420 5.78737 5.87937 5.94516 6.00535 6.05314 6.09067 6.12189 6.25084 6.33275 6.44365 6.59304 6.66528 6.87286 6.97533 7.22531 7.52520 7.79797 8.04109 8.21232 8.53009 9.07128 9.33067 9.63415 11.08277 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.044522 B = 0.004817 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.746766 B = 5811.114049 C = 6122.141358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.051 0.949 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.519 3.481 13 O -0.548 6.548 14 N -0.736 5.736 15 C 0.126 3.874 16 H 0.106 0.894 17 C -0.148 4.148 18 C -0.101 4.101 19 H 0.082 0.918 20 C -0.101 4.101 21 C -0.117 4.117 22 C -0.115 4.115 23 C -0.108 4.108 24 C -0.109 4.109 25 H 0.079 0.921 26 H 0.030 0.970 27 H 0.093 0.907 28 H 0.010 0.990 29 H 0.260 0.740 30 H 0.396 0.604 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 1.255 18.278 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.309 3.691 13 O -0.424 6.424 14 N -0.390 5.390 15 C 0.020 3.980 16 H 0.124 0.876 17 C -0.187 4.187 18 C -0.119 4.119 19 H 0.100 0.900 20 C -0.139 4.139 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.146 4.146 24 C -0.128 4.128 25 H 0.097 0.903 26 H 0.049 0.951 27 H 0.111 0.889 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.232 0.768 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.959 0.637 18.014 18.132 hybrid contribution 0.020 -0.099 -0.757 0.764 sum -1.939 0.538 17.257 17.374 Atomic orbital electron populations 1.21731 0.96632 0.99744 1.00803 1.18874 0.94091 0.96809 0.89571 0.93117 1.21155 1.30806 1.12714 0.89036 0.90826 1.24951 0.95180 0.95074 0.99088 1.69870 1.37258 1.23154 1.23446 0.86461 0.79452 0.79243 0.82111 1.20707 1.21325 1.19768 1.21982 0.78247 0.84214 0.84699 1.90514 1.38115 1.26959 1.86859 1.46359 1.54878 1.32384 1.05371 1.22489 0.98008 0.93813 0.83689 0.87589 1.23458 0.99616 1.00373 0.95276 1.21461 0.98720 0.97611 0.94155 0.90002 1.20499 0.97294 0.98434 0.97673 1.21149 0.98175 0.95066 1.01062 1.21362 0.99646 0.97356 0.96852 1.21383 0.98040 0.97788 0.97363 1.22673 0.99164 0.94870 0.96110 0.90258 0.95052 0.88887 0.97061 0.93029 0.76821 0.89887 0.91506 0.92091 0.92622 0.92133 0.92274 0.91962 0.92020 0.91215 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.87 37.16 0.33 -2.73 16 2 C 0.03 0.70 2.64 -92.92 -0.25 0.45 16 3 H 0.05 1.33 8.14 -51.93 -0.42 0.90 16 4 C -0.50 -14.39 8.37 -34.44 -0.29 -14.68 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.89 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.47 11.32 55.43 0.63 -24.84 16 8 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.52 12.08 7.15 -10.98 -0.08 12.01 16 13 O -0.55 -14.63 15.10 5.56 0.08 -14.54 16 14 N -0.74 -13.09 5.06 -52.68 -0.27 -13.36 16 15 C 0.13 1.92 4.04 -66.77 -0.27 1.65 16 16 H 0.11 1.81 7.54 -51.93 -0.39 1.42 16 17 C -0.15 -1.97 7.09 -26.11 -0.18 -2.15 16 18 C -0.10 -1.08 3.63 -92.04 -0.33 -1.42 16 19 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 20 C -0.10 -0.93 5.51 -28.67 -0.16 -1.09 16 21 C -0.12 -1.03 5.75 -27.63 -0.16 -1.19 16 22 C -0.11 -1.03 5.90 -26.94 -0.16 -1.19 16 23 C -0.11 -1.15 4.50 -26.74 -0.12 -1.27 16 24 C -0.11 -1.27 4.28 -90.14 -0.39 -1.65 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 28 H 0.01 0.21 7.56 -51.93 -0.39 -0.19 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.40 6.23 5.75 -40.82 -0.23 5.99 16 31 H 0.08 1.10 7.40 -51.93 -0.38 0.72 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.57 7.94 -51.93 -0.41 0.16 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.80 5.78 -51.93 -0.30 0.50 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 308.03 15.07 4.64 4.64 Total: -1.00 -30.84 308.03 -8.65 -39.50 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.57 Total: 3.28 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -2.15 Total: -11.75 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.36 Total: -38.20 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.08 Total: -14.54 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.84 -8.65 -39.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119441075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.421 kcal (2) G-P(sol) polarization free energy of solvation -30.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds