Wall clock time and date at job start Sun Mar 29 2020 23:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50708 * 120.00092 * 2 1 4 4 C 1.53005 * 109.46810 * 125.73410 * 3 2 1 5 5 C 1.50697 * 112.90803 * 311.70099 * 4 3 2 6 6 O 1.21283 * 119.99559 * 115.01808 * 5 4 3 7 7 N 1.34777 * 120.00467 * 295.02133 * 5 4 3 8 8 C 1.46500 * 119.99478 * 4.72599 * 7 5 4 9 9 C 1.46504 * 120.00158 * 184.73481 * 7 5 4 10 10 H 1.08995 * 109.46626 * 359.97438 * 9 7 5 11 11 C 1.52996 * 109.47007 * 119.99670 * 9 7 5 12 12 C 1.50695 * 109.46831 * 239.99710 * 9 7 5 13 13 H 1.08005 * 120.00265 * 359.97438 * 12 9 7 14 14 C 1.37875 * 120.00208 * 180.02562 * 12 9 7 15 15 N 1.31515 * 119.99654 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 120.00295 * 179.97438 * 14 12 9 17 17 H 1.48508 * 109.46892 * 89.99988 * 16 14 12 18 18 H 1.48500 * 109.46960 * 209.99715 * 16 14 12 19 19 H 1.48496 * 109.47297 * 330.00051 * 16 14 12 20 20 C 1.53780 * 113.61094 * 82.95339 * 4 3 2 21 21 C 1.53788 * 87.07844 * 89.11549 * 20 4 3 22 22 C 1.53778 * 87.08162 * 25.42953 * 21 20 4 23 23 H 1.07999 * 119.99698 * 179.97438 * 1 2 3 24 24 H 1.08001 * 119.99987 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.00662 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.46780 * 5.73705 * 3 2 1 27 27 H 1.08992 * 109.47222 * 245.73944 * 3 2 1 28 28 H 1.09003 * 109.46822 * 85.56050 * 8 7 5 29 29 H 1.09001 * 109.46740 * 205.55678 * 8 7 5 30 30 H 1.08998 * 109.47279 * 325.55349 * 8 7 5 31 31 H 1.08995 * 109.47728 * 59.99578 * 11 9 7 32 32 H 1.08999 * 109.47091 * 179.97438 * 11 9 7 33 33 H 1.09005 * 109.47249 * 299.99484 * 11 9 7 34 34 H 0.97004 * 119.99992 * 179.97438 * 15 14 12 35 35 H 1.08998 * 113.61379 * 203.65928 * 20 4 3 36 36 H 1.08995 * 113.61821 * 334.56802 * 20 4 3 37 37 H 1.08992 * 113.61288 * 270.87717 * 21 20 4 38 38 H 1.09001 * 113.61168 * 139.97907 * 21 20 4 39 39 H 1.08995 * 113.61498 * 220.01831 * 22 21 20 40 40 H 1.09008 * 113.61403 * 89.11666 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0481 1.3255 1.1710 5 6 2.4174 0.9101 2.4750 6 8 2.7824 -0.1053 3.0288 7 7 1.4476 1.6668 3.0259 8 6 0.9342 2.8360 2.3078 9 6 0.9071 1.3203 4.3428 10 1 1.4077 0.4275 4.7174 11 6 1.1409 2.4812 5.3115 12 6 -0.5715 1.0546 4.2247 13 1 -1.0599 1.1360 3.2648 14 6 -1.3011 0.7084 5.3422 15 7 -0.7065 0.6096 6.5111 16 14 -3.1341 0.3796 5.1960 17 1 -3.3574 -1.0603 4.9095 18 1 -3.8049 0.7405 6.4707 19 1 -3.6971 1.1972 4.0916 20 6 4.3752 0.6081 0.8724 21 6 4.8939 1.9558 0.3435 22 6 3.8634 2.6258 1.2676 23 1 -0.5399 -0.9353 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3596 2.1310 0.1027 27 1 2.6108 1.4087 -0.9368 28 1 0.1454 2.5244 1.6231 29 1 0.5321 3.5538 3.0229 30 1 1.7431 3.2998 1.7434 31 1 0.6402 3.3738 4.9367 32 1 0.7384 2.2236 6.2912 33 1 2.2105 2.6734 5.3969 34 1 -1.2199 0.3664 7.2974 35 1 4.8943 0.2608 1.7657 36 1 4.2929 -0.1601 0.1037 37 1 4.6971 2.1136 -0.7169 38 1 5.9278 2.1641 0.6187 39 1 3.3680 3.4863 0.8180 40 1 4.2426 2.8300 2.2690 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121189063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:05 Heat of formation + Delta-G solvation = 2.562103 kcal Electronic energy + Delta-G solvation = -19813.201313 eV Core-core repulsion = 17015.290927 eV Total energy + Delta-G solvation = -2797.910386 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.40473 -37.35925 -35.21961 -34.08181 -32.70582 -29.61761 -27.86650 -26.22714 -25.49891 -25.17472 -24.36075 -21.35654 -19.73193 -19.09166 -17.86784 -16.51489 -16.11610 -15.56758 -15.18058 -14.58541 -14.42453 -14.16233 -13.54290 -13.48751 -12.65562 -12.50495 -12.23363 -12.11109 -11.87798 -11.62310 -11.45818 -11.30067 -11.02685 -10.90894 -10.86536 -10.71517 -10.64006 -10.31482 -10.18899 -10.13296 -9.98570 -9.10541 -9.03005 -8.62990 -8.36289 -7.46444 -6.02377 -4.09359 2.62370 3.29214 3.35528 3.37031 3.51006 4.06582 4.43471 4.62004 4.69642 4.88208 4.93619 5.24589 5.29256 5.38236 5.53853 5.59192 5.68899 5.77521 5.88429 5.94825 5.96201 6.01745 6.08850 6.16572 6.25525 6.33531 6.40398 6.54367 6.79967 6.87121 6.95064 7.08372 7.11111 7.53263 7.59597 7.78165 8.07700 8.27101 8.65474 8.90875 9.19684 9.57122 11.03012 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.026961 B = 0.007359 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.305144 B = 3804.060134 C = 4277.292517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.156 4.156 3 C -0.066 4.066 4 C -0.101 4.101 5 C 0.524 3.476 6 O -0.554 6.554 7 N -0.587 5.587 8 C 0.083 3.917 9 C 0.258 3.742 10 H 0.061 0.939 11 C -0.147 4.147 12 C -0.518 4.518 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.890 5.890 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.111 4.111 21 C -0.141 4.141 22 C -0.124 4.124 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.029 0.971 32 H 0.093 0.907 33 H 0.010 0.990 34 H 0.262 0.738 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.343 5.303 -12.714 15.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.174 4.174 3 C -0.103 4.103 4 C -0.105 4.105 5 C 0.310 3.690 6 O -0.433 6.433 7 N -0.318 5.318 8 C -0.060 4.060 9 C 0.158 3.842 10 H 0.079 0.921 11 C -0.205 4.205 12 C -0.557 4.557 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.724 3.276 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.149 4.149 21 C -0.179 4.179 22 C -0.162 4.162 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.124 0.876 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.462 4.742 -12.191 14.590 hybrid contribution -1.234 -0.168 0.076 1.247 sum 5.229 4.573 -12.115 13.965 Atomic orbital electron populations 1.23749 0.95825 1.01685 1.00171 1.22734 0.95966 0.98106 1.00629 1.20598 0.97045 0.96556 0.96107 1.22087 0.95278 0.98502 0.94604 1.20025 0.79875 0.83540 0.85548 1.90619 1.63657 1.25073 1.63955 1.48081 1.36109 1.26785 1.20793 1.21728 0.98186 0.89168 0.96963 1.18890 0.93706 0.94865 0.76762 0.92147 1.22101 0.96465 0.98210 1.03767 1.21323 0.92873 1.47016 0.94518 0.92317 1.24890 0.98531 0.95235 0.95222 1.69883 1.35843 1.48074 0.99070 0.86530 0.85069 0.78624 0.77364 1.20676 1.21191 1.19965 1.22795 0.94470 0.96133 1.01503 1.22847 0.98783 0.97045 0.99203 1.22970 0.96838 0.95702 1.00668 0.88731 0.88744 0.87619 0.90403 0.90631 0.93701 0.91101 0.92570 0.95158 0.88867 0.97123 0.92802 0.89241 0.91321 0.90182 0.91416 0.90825 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 14.32 29.02 0.42 -2.33 16 2 C -0.16 -2.40 8.57 -36.02 -0.31 -2.71 16 3 C -0.07 -0.88 4.64 -27.88 -0.13 -1.01 16 4 C -0.10 -1.55 0.34 -154.85 -0.05 -1.61 16 5 C 0.52 11.04 5.72 -10.99 -0.06 10.98 16 6 O -0.55 -14.11 15.48 5.55 0.09 -14.03 16 7 N -0.59 -12.69 2.75 -175.27 -0.48 -13.17 16 8 C 0.08 1.44 8.12 59.85 0.49 1.93 16 9 C 0.26 6.71 2.63 -69.08 -0.18 6.53 16 10 H 0.06 1.84 6.91 -51.93 -0.36 1.48 16 11 C -0.15 -3.57 8.96 37.16 0.33 -3.23 16 12 C -0.52 -14.24 8.37 -34.44 -0.29 -14.53 16 13 H 0.06 1.60 7.65 -52.48 -0.40 1.19 16 14 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 15 N -0.89 -25.61 11.32 55.43 0.63 -24.98 16 16 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.11 -1.55 6.87 -25.92 -0.18 -1.73 16 21 C -0.14 -1.53 7.73 -25.92 -0.20 -1.73 16 22 C -0.12 -1.57 5.82 -25.92 -0.15 -1.72 16 23 H 0.09 1.42 8.06 -52.49 -0.42 0.99 16 24 H 0.09 1.39 7.74 -52.49 -0.41 0.98 16 25 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 26 H 0.08 1.00 5.21 -51.93 -0.27 0.73 16 27 H 0.08 0.83 7.34 -51.93 -0.38 0.45 16 28 H 0.04 0.75 7.27 -51.93 -0.38 0.37 16 29 H 0.07 1.25 6.43 -51.93 -0.33 0.91 16 30 H 0.06 0.78 4.30 -51.93 -0.22 0.56 16 31 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 32 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 33 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.09 1.41 7.70 -51.93 -0.40 1.01 16 36 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 37 H 0.08 0.74 7.66 -51.93 -0.40 0.34 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.79 7.11 -51.93 -0.37 0.42 16 40 H 0.08 1.17 8.09 -51.92 -0.42 0.75 16 LS Contribution 312.75 15.07 4.71 4.71 Total: -1.00 -31.28 312.75 -6.74 -38.01 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.25 Total: 2.58 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -0.41 Total: -9.51 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.14 Total: -38.15 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.09 Total: -14.03 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.28 -6.74 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121189063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.576 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds