Wall clock time and date at job start Sun Mar 29 2020 23:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46903 * 109.47271 * 2 1 4 4 C 1.46894 * 110.99830 * 297.54305 * 3 2 1 5 5 C 1.50710 * 109.47060 * 292.79684 * 4 3 2 6 6 H 1.07996 * 119.99711 * 354.98504 * 5 4 3 7 7 C 1.37875 * 120.00160 * 174.98823 * 5 4 3 8 8 N 1.31513 * 119.99935 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99984 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47082 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46706 * 119.99943 * 9 7 5 12 12 H 1.48498 * 109.47112 * 239.99971 * 9 7 5 13 13 C 1.46903 * 111.00147 * 61.49354 * 3 2 1 14 14 C 1.53005 * 109.46830 * 66.04298 * 13 3 2 15 15 C 1.53007 * 109.46806 * 179.97438 * 14 13 3 16 16 C 1.50695 * 109.46758 * 180.02562 * 15 14 13 17 17 C 1.34521 * 125.79143 * 90.00610 * 16 15 14 18 18 C 1.41377 * 106.84144 * 180.02562 * 17 16 15 19 19 C 1.34518 * 106.84332 * 359.97438 * 18 17 16 20 20 C 1.50693 * 125.78940 * 179.73815 * 19 18 17 21 21 O 1.34302 * 125.79011 * 270.02115 * 16 15 14 22 22 H 1.08994 * 109.47003 * 179.50875 * 1 2 3 23 23 H 1.08998 * 109.46968 * 299.51013 * 1 2 3 24 24 H 1.09003 * 109.46806 * 59.50334 * 1 2 3 25 25 H 1.08995 * 109.47228 * 239.99796 * 2 1 3 26 26 H 1.09007 * 109.46565 * 119.99619 * 2 1 3 27 27 H 1.09004 * 109.47417 * 52.79514 * 4 3 2 28 28 H 1.09004 * 109.47148 * 172.79665 * 4 3 2 29 29 H 0.97000 * 120.00003 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.46992 * 306.04797 * 13 3 2 31 31 H 1.08993 * 109.47217 * 186.04618 * 13 3 2 32 32 H 1.09002 * 109.46925 * 60.00458 * 14 13 3 33 33 H 1.08993 * 109.47481 * 300.00158 * 14 13 3 34 34 H 1.09002 * 109.46988 * 60.00516 * 15 14 13 35 35 H 1.09000 * 109.46909 * 300.00577 * 15 14 13 36 36 H 1.07999 * 126.57714 * 0.03218 * 17 16 15 37 37 H 1.07999 * 126.57837 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.47501 * 90.00387 * 20 19 18 39 39 H 1.09004 * 109.46961 * 209.99875 * 20 19 18 40 40 H 1.08997 * 109.47426 * 329.99772 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.5974 2.0927 -1.2160 5 6 2.2906 1.4933 -2.4124 6 1 3.0363 0.7243 -2.2753 7 6 1.9727 1.9268 -3.6821 8 7 1.0650 2.8636 -3.8491 9 14 2.8325 1.1844 -5.1650 10 1 3.8046 0.1577 -4.7110 11 1 1.8261 0.5528 -6.0558 12 1 3.5498 2.2520 -5.9072 13 6 1.5782 2.0996 1.2052 14 6 2.2403 1.4793 2.4372 15 6 1.7809 2.2239 3.6923 16 6 2.4336 1.6134 4.9057 17 6 3.6124 1.9857 5.4360 18 6 3.8392 1.1528 6.5557 19 6 2.7851 0.3216 6.6430 20 6 2.5920 -0.7504 7.6843 21 8 1.9371 0.6050 5.6408 22 1 -0.3633 -1.0276 -0.0088 23 1 -0.3633 0.5062 0.8943 24 1 -0.3633 0.5216 -0.8855 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 0.5181 1.9971 -1.3357 28 1 1.8618 3.1469 -1.1332 29 1 0.8416 3.1689 -4.7423 30 1 0.4948 2.0219 1.2971 31 1 1.8621 3.1492 1.1298 32 1 3.3237 1.5569 2.3452 33 1 1.9564 0.4297 2.5126 34 1 0.6975 2.1467 3.7845 35 1 2.0652 3.2735 3.6166 36 1 4.2611 2.7704 5.0757 37 1 4.6942 1.1794 7.2149 38 1 2.0630 -0.3335 8.5413 39 1 2.0092 -1.5680 7.2603 40 1 3.5642 -1.1251 8.0046 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207947789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:59 Heat of formation + Delta-G solvation = 0.311969 kcal Electronic energy + Delta-G solvation = -18111.065070 eV Core-core repulsion = 15313.057111 eV Total energy + Delta-G solvation = -2798.007960 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.58330 -37.60227 -34.36496 -33.18695 -32.55101 -31.31522 -29.39172 -28.00361 -25.89038 -23.99304 -23.27856 -21.82040 -21.30352 -20.07598 -19.02824 -16.55111 -16.20045 -16.12894 -15.49177 -14.92050 -14.51703 -14.35227 -13.81677 -13.37500 -13.21696 -13.01443 -12.87136 -12.81121 -12.47364 -12.03642 -11.83961 -11.74231 -11.51378 -11.24257 -11.14760 -10.81595 -10.59019 -10.45655 -10.39121 -9.98321 -9.86270 -9.60455 -9.14836 -8.40611 -8.24241 -7.12339 -5.99888 -4.00507 1.69869 2.60083 2.88266 3.32398 3.39878 3.45123 4.44383 4.56777 4.81950 4.99822 5.02485 5.05747 5.22132 5.29815 5.35433 5.43739 5.51248 5.59880 5.71678 5.81403 5.87958 5.90492 5.99111 6.03567 6.10559 6.19365 6.23126 6.43699 6.52161 6.54798 6.63483 6.75096 6.96211 7.18913 7.35772 7.48516 7.85779 8.15044 8.25539 8.61148 9.08357 9.63633 11.10840 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.041985 B = 0.003592 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.741525 B = 7792.389140 C = 7871.068442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.059 3.941 3 N -0.536 5.536 4 C 0.187 3.813 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.284 1.284 13 C 0.051 3.949 14 C -0.110 4.110 15 C -0.041 4.041 16 C 0.002 3.998 17 C -0.214 4.214 18 C -0.210 4.210 19 C -0.027 4.027 20 C -0.071 4.071 21 O -0.175 6.175 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.003 0.997 28 H 0.024 0.976 29 H 0.260 0.740 30 H 0.028 0.972 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 -4.130 20.036 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.069 4.069 3 N -0.259 5.259 4 C 0.062 3.938 5 C -0.541 4.541 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.077 4.077 14 C -0.148 4.148 15 C -0.078 4.078 16 C -0.048 4.048 17 C -0.233 4.233 18 C -0.229 4.229 19 C -0.077 4.077 20 C -0.128 4.128 21 O -0.072 6.072 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.021 0.979 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.693 -4.183 19.831 20.338 hybrid contribution -0.287 -0.128 -0.861 0.916 sum 1.405 -4.311 18.971 19.505 Atomic orbital electron populations 1.22386 0.99563 1.00893 1.01935 1.21985 0.92008 0.91678 1.01236 1.62317 1.59194 1.01888 1.02537 1.19792 0.94793 0.93680 0.85500 1.21211 1.21567 1.21237 0.90134 0.91892 1.24986 0.95354 0.95315 0.99045 1.69969 1.32328 1.29422 1.22281 0.86475 0.79442 0.79087 0.82633 1.19660 1.21183 1.21068 1.22056 0.96797 0.98237 0.90633 1.21618 1.01729 0.99556 0.91911 1.20211 1.00316 0.99193 0.88103 1.22567 0.95488 0.90836 0.95913 1.21567 0.98317 1.04536 0.98867 1.21539 1.00620 0.99419 1.01370 1.22377 0.91267 1.01463 0.92618 1.20255 1.03629 0.94618 0.94256 1.83961 1.44645 1.44386 1.34242 0.93541 0.93660 0.91352 0.90241 0.92948 0.97937 0.95809 0.93068 0.95350 0.91506 0.90895 0.91851 0.90359 0.88761 0.83511 0.83792 0.90394 0.90673 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.47 9.26 37.16 0.34 -3.13 16 2 C 0.06 1.17 5.67 -3.82 -0.02 1.15 16 3 N -0.54 -11.55 4.69 -236.06 -1.11 -12.65 16 4 C 0.19 4.86 4.54 -4.97 -0.02 4.84 16 5 C -0.50 -14.16 8.39 -34.44 -0.29 -14.45 16 6 H 0.06 1.77 7.39 -52.49 -0.39 1.39 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 C 0.05 0.91 4.74 -3.82 -0.02 0.89 16 14 C -0.11 -1.63 5.12 -26.73 -0.14 -1.77 16 15 C -0.04 -0.50 5.75 -27.88 -0.16 -0.66 16 16 C 0.00 0.03 6.57 -35.62 -0.23 -0.21 16 17 C -0.21 -2.69 10.81 -39.70 -0.43 -3.12 16 18 C -0.21 -2.43 10.81 -39.70 -0.43 -2.86 16 19 C -0.03 -0.32 7.32 -35.63 -0.26 -0.58 16 20 C -0.07 -0.53 10.42 36.00 0.37 -0.15 16 21 O -0.18 -2.44 10.65 5.70 0.06 -2.38 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.04 0.77 6.33 -51.93 -0.33 0.44 16 24 H 0.07 1.45 6.28 -51.93 -0.33 1.12 16 25 H 0.08 1.71 6.98 -51.93 -0.36 1.34 16 26 H 0.05 0.92 6.40 -51.93 -0.33 0.59 16 27 H 0.00 0.08 6.02 -51.93 -0.31 -0.23 16 28 H 0.02 0.66 7.91 -51.93 -0.41 0.25 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.03 0.50 6.06 -51.93 -0.31 0.18 16 31 H 0.07 1.17 7.92 -51.93 -0.41 0.76 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.97 6.52 -51.93 -0.34 0.63 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 323.57 15.07 4.88 4.88 Total: -1.00 -30.93 323.57 -8.30 -39.23 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.47 Total: -1.15 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -1.38 Total: -18.62 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: -0.37 Total: -38.70 kcal Atomic # 8 Polarization: -2.44 SS G_CDS: 0.06 Total: -2.38 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.93 -8.30 -39.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207947789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.542 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds