Wall clock time and date at job start Sun Mar 29 2020 23:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46903 * 109.47271 * 2 1 4 4 C 1.46894 * 110.99830 * 297.54305 * 3 2 1 5 5 C 1.50710 * 109.47060 * 292.79684 * 4 3 2 6 6 H 1.07996 * 119.99711 * 354.98504 * 5 4 3 7 7 C 1.37875 * 120.00160 * 174.98823 * 5 4 3 8 8 N 1.31513 * 119.99935 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99984 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47082 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46706 * 119.99943 * 9 7 5 12 12 H 1.48498 * 109.47112 * 239.99971 * 9 7 5 13 13 C 1.46903 * 111.00147 * 61.49354 * 3 2 1 14 14 C 1.53005 * 109.46830 * 66.04298 * 13 3 2 15 15 C 1.53007 * 109.46806 * 179.97438 * 14 13 3 16 16 C 1.50695 * 109.46758 * 180.02562 * 15 14 13 17 17 C 1.34521 * 125.79143 * 90.00610 * 16 15 14 18 18 C 1.41377 * 106.84144 * 180.02562 * 17 16 15 19 19 C 1.34518 * 106.84332 * 359.97438 * 18 17 16 20 20 C 1.50693 * 125.78940 * 179.73815 * 19 18 17 21 21 O 1.34302 * 125.79011 * 270.02115 * 16 15 14 22 22 H 1.08994 * 109.47003 * 179.50875 * 1 2 3 23 23 H 1.08998 * 109.46968 * 299.51013 * 1 2 3 24 24 H 1.09003 * 109.46806 * 59.50334 * 1 2 3 25 25 H 1.08995 * 109.47228 * 239.99796 * 2 1 3 26 26 H 1.09007 * 109.46565 * 119.99619 * 2 1 3 27 27 H 1.09004 * 109.47417 * 52.79514 * 4 3 2 28 28 H 1.09004 * 109.47148 * 172.79665 * 4 3 2 29 29 H 0.97000 * 120.00003 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.46992 * 306.04797 * 13 3 2 31 31 H 1.08993 * 109.47217 * 186.04618 * 13 3 2 32 32 H 1.09002 * 109.46925 * 60.00458 * 14 13 3 33 33 H 1.08993 * 109.47481 * 300.00158 * 14 13 3 34 34 H 1.09002 * 109.46988 * 60.00516 * 15 14 13 35 35 H 1.09000 * 109.46909 * 300.00577 * 15 14 13 36 36 H 1.07999 * 126.57714 * 0.03218 * 17 16 15 37 37 H 1.07999 * 126.57837 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.47501 * 90.00387 * 20 19 18 39 39 H 1.09004 * 109.46961 * 209.99875 * 20 19 18 40 40 H 1.08997 * 109.47426 * 329.99772 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.5974 2.0927 -1.2160 5 6 2.2906 1.4933 -2.4124 6 1 3.0363 0.7243 -2.2753 7 6 1.9727 1.9268 -3.6821 8 7 1.0650 2.8636 -3.8491 9 14 2.8325 1.1844 -5.1650 10 1 3.8046 0.1577 -4.7110 11 1 1.8261 0.5528 -6.0558 12 1 3.5498 2.2520 -5.9072 13 6 1.5782 2.0996 1.2052 14 6 2.2403 1.4793 2.4372 15 6 1.7809 2.2239 3.6923 16 6 2.4336 1.6134 4.9057 17 6 3.6124 1.9857 5.4360 18 6 3.8392 1.1528 6.5557 19 6 2.7851 0.3216 6.6430 20 6 2.5920 -0.7504 7.6843 21 8 1.9371 0.6050 5.6408 22 1 -0.3633 -1.0276 -0.0088 23 1 -0.3633 0.5062 0.8943 24 1 -0.3633 0.5216 -0.8855 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 0.5181 1.9971 -1.3357 28 1 1.8618 3.1469 -1.1332 29 1 0.8416 3.1689 -4.7423 30 1 0.4948 2.0219 1.2971 31 1 1.8621 3.1492 1.1298 32 1 3.3237 1.5569 2.3452 33 1 1.9564 0.4297 2.5126 34 1 0.6975 2.1467 3.7845 35 1 2.0652 3.2735 3.6166 36 1 4.2611 2.7704 5.0757 37 1 4.6942 1.1794 7.2149 38 1 2.0630 -0.3335 8.5413 39 1 2.0092 -1.5680 7.2603 40 1 3.5642 -1.1251 8.0046 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207947789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:59 Heat of formation + Delta-G solvation = -17.869760 kcal Electronic energy + Delta-G solvation = -18111.853489 eV Core-core repulsion = 15313.057111 eV Total energy + Delta-G solvation = -2798.796379 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.49890 -39.22806 -35.64909 -34.55643 -34.05611 -32.28774 -31.02759 -29.47770 -27.40764 -25.25742 -24.99530 -22.98231 -22.53657 -20.99767 -20.63432 -18.35814 -17.49156 -17.14823 -17.01703 -16.54809 -16.22730 -15.42075 -15.18773 -14.68297 -14.52248 -13.96822 -13.91917 -13.73193 -13.70782 -13.46541 -13.18113 -13.10345 -12.86941 -12.80697 -12.62204 -12.51907 -12.36487 -12.15968 -11.85614 -11.75459 -11.26339 -11.15167 -10.78246 -10.58834 -9.14959 -8.88441 -8.17944 -6.27126 0.78330 1.40604 1.41379 1.54879 1.69784 2.02784 2.41539 3.14444 3.35733 3.73680 3.95198 4.12166 4.16330 4.23927 4.27548 4.44118 4.45931 4.53778 4.60279 4.70365 4.71086 4.72949 4.79545 4.89371 4.96381 4.98456 5.03261 5.09443 5.22691 5.25041 5.30089 5.37563 5.41120 5.53327 5.68644 5.70646 6.11256 6.27637 6.40367 6.71866 6.90333 7.42329 8.92714 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.041985 B = 0.003592 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.741525 B = 7792.389140 C = 7871.068442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.060 3.940 3 N -0.546 5.546 4 C 0.203 3.797 5 C -0.518 4.518 6 H 0.059 0.941 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.966 3.034 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.052 3.948 14 C -0.094 4.094 15 C -0.032 4.032 16 C -0.022 4.022 17 C -0.220 4.220 18 C -0.224 4.224 19 C -0.034 4.034 20 C -0.071 4.071 21 O -0.195 6.195 22 H 0.071 0.929 23 H 0.059 0.941 24 H 0.032 0.968 25 H 0.057 0.943 26 H 0.080 0.920 27 H -0.019 1.019 28 H -0.003 1.003 29 H 0.263 0.737 30 H 0.033 0.967 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.158 0.842 37 H 0.167 0.833 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.219 -5.267 21.363 22.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.068 4.068 3 N -0.270 5.270 4 C 0.076 3.924 5 C -0.557 4.557 6 H 0.077 0.923 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.791 3.209 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.204 1.204 13 C -0.076 4.076 14 C -0.132 4.132 15 C -0.070 4.070 16 C -0.072 4.072 17 C -0.239 4.239 18 C -0.243 4.243 19 C -0.083 4.083 20 C -0.127 4.127 21 O -0.093 6.093 22 H 0.090 0.910 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.098 0.902 27 H -0.001 1.001 28 H 0.015 0.985 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.175 0.825 37 H 0.184 0.816 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.389 -5.327 21.181 21.971 hybrid contribution -0.496 0.218 -1.172 1.292 sum 1.893 -5.109 20.009 20.737 Atomic orbital electron populations 1.22268 0.98469 1.02166 1.00875 1.22000 0.92921 0.90491 1.01435 1.62217 1.59751 1.02766 1.02260 1.19434 0.93169 0.92522 0.87237 1.21493 1.21638 1.21219 0.91339 0.92311 1.25867 0.95981 0.95638 1.02138 1.70086 1.33640 1.30655 1.23173 0.85386 0.78434 0.78412 0.78708 1.18873 1.20469 1.20447 1.22117 0.97325 0.98003 0.90118 1.21428 1.00876 0.99357 0.91562 1.20108 1.00637 0.99504 0.86727 1.22661 0.96186 0.91647 0.96675 1.21885 0.98152 1.04756 0.99128 1.21893 1.01551 0.99316 1.01572 1.23215 0.90743 1.01929 0.92421 1.20459 1.05172 0.93584 0.93520 1.83948 1.45603 1.44715 1.35046 0.91044 0.92192 0.94848 0.92460 0.90213 1.00150 0.98462 0.92796 0.94912 0.91829 0.91633 0.92163 0.89724 0.87420 0.82472 0.81571 0.88809 0.90353 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.48 9.26 71.98 0.67 -5.81 16 2 C 0.06 2.32 5.67 86.30 0.49 2.81 16 3 N -0.55 -23.77 4.69 -900.75 -4.23 -28.00 16 4 C 0.20 10.85 4.54 85.56 0.39 11.24 16 5 C -0.52 -29.77 8.39 25.60 0.21 -29.56 16 6 H 0.06 3.35 7.39 -2.91 -0.02 3.33 16 7 C 0.00 0.08 5.46 84.65 0.46 0.54 16 8 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 9 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 10 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 C 0.05 1.84 4.74 86.30 0.41 2.25 16 14 C -0.09 -2.70 5.12 30.60 0.16 -2.54 16 15 C -0.03 -0.76 5.75 29.85 0.17 -0.59 16 16 C -0.02 -0.57 6.57 24.83 0.16 -0.40 16 17 C -0.22 -5.24 10.81 22.19 0.24 -5.00 16 18 C -0.22 -4.77 10.81 22.19 0.24 -4.53 16 19 C -0.03 -0.72 7.32 24.83 0.18 -0.54 16 20 C -0.07 -0.87 10.42 71.23 0.74 -0.13 16 21 O -0.20 -5.20 10.65 -2.51 -0.03 -5.22 16 22 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 23 H 0.06 1.96 6.33 -2.39 -0.02 1.95 16 24 H 0.03 1.43 6.28 -2.39 -0.01 1.41 16 25 H 0.06 2.47 6.98 -2.39 -0.02 2.45 16 26 H 0.08 2.68 6.40 -2.38 -0.02 2.66 16 27 H -0.02 -1.10 6.02 -2.38 -0.01 -1.11 16 28 H 0.00 -0.16 7.91 -2.39 -0.02 -0.18 16 29 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.03 1.13 6.06 -2.39 -0.01 1.11 16 31 H 0.06 2.25 7.92 -2.39 -0.02 2.23 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 33 H 0.06 1.76 6.52 -2.39 -0.02 1.74 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -67.09 323.57 3.58 -63.51 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 1.00 Total: 11.44 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 4.53 Total: -32.25 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -3.94 Total: -84.36 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.03 Total: -5.22 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -67.09 3.58 -63.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207947789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.636 kcal (2) G-P(sol) polarization free energy of solvation -67.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds