Wall clock time and date at job start Sun Mar 29 2020 23:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00361 * 2 1 4 4 O 1.42899 * 109.47065 * 135.00074 * 3 2 1 5 5 C 1.42903 * 113.99745 * 180.02562 * 4 3 2 6 6 H 1.09004 * 110.64751 * 31.69421 * 5 4 3 7 7 C 1.54597 * 110.72308 * 268.54390 * 5 4 3 8 8 C 1.53996 * 105.14083 * 219.68452 * 7 5 4 9 9 N 1.47903 * 107.05636 * 358.77365 * 8 7 5 10 10 C 1.46901 * 110.99947 * 145.84126 * 9 8 7 11 11 C 1.53002 * 109.46862 * 75.35164 * 10 9 8 12 12 C 1.50703 * 115.54978 * 38.90550 * 11 10 9 13 13 H 1.07993 * 120.00060 * 269.82604 * 12 11 10 14 14 C 1.37883 * 119.99574 * 89.83057 * 12 11 10 15 15 N 1.31513 * 119.99543 * 174.35489 * 14 12 11 16 16 Si 1.86801 * 119.99975 * 354.35043 * 14 12 11 17 17 H 1.48500 * 109.46907 * 90.96351 * 16 14 12 18 18 H 1.48500 * 109.47015 * 210.96033 * 16 14 12 19 19 H 1.48499 * 109.47161 * 330.96312 * 16 14 12 20 20 C 1.53006 * 117.49791 * 253.20373 * 11 10 9 21 21 C 1.52999 * 117.49883 * 184.58132 * 11 10 9 22 22 C 1.48538 * 105.81862 * 25.33091 * 9 8 7 23 23 H 1.07999 * 119.99772 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.00473 * 179.97438 * 1 2 3 25 25 H 1.07999 * 119.99772 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.46648 * 14.99646 * 3 2 1 27 27 H 1.09000 * 109.46855 * 255.00274 * 3 2 1 28 28 H 1.09004 * 110.30715 * 338.60026 * 7 5 4 29 29 H 1.09002 * 110.30645 * 100.66662 * 7 5 4 30 30 H 1.09000 * 109.91381 * 118.12275 * 8 7 5 31 31 H 1.08996 * 109.91631 * 239.42127 * 8 7 5 32 32 H 1.08998 * 109.47273 * 195.34710 * 10 9 8 33 33 H 1.08998 * 109.47160 * 315.35599 * 10 9 8 34 34 H 0.97002 * 119.99630 * 179.97438 * 15 14 12 35 35 H 1.08999 * 117.49997 * 359.97438 * 20 11 10 36 36 H 1.09001 * 117.49906 * 145.02188 * 20 11 10 37 37 H 1.09002 * 117.49851 * 214.97791 * 21 11 10 38 38 H 1.09001 * 117.49650 * 359.97336 * 21 11 10 39 39 H 1.09000 * 110.66269 * 202.35518 * 22 9 8 40 40 H 1.09005 * 110.66745 * 79.22922 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2411 0.9527 5 6 3.9078 2.4351 1.0328 6 1 3.2940 3.3108 0.8217 7 6 5.1131 2.3662 0.0671 8 6 6.2849 2.9986 0.8407 9 7 5.7570 3.4263 2.1544 10 6 6.7735 3.2765 3.2043 11 6 7.8071 4.3974 3.0770 12 6 7.2558 5.7515 2.7113 13 1 7.1677 6.0363 1.6734 14 6 6.8639 6.6267 3.7021 15 7 6.4877 7.8476 3.3898 16 14 6.8674 6.0783 5.4878 17 1 8.1824 6.3955 6.1004 18 1 5.7930 6.7895 6.2261 19 1 6.6297 4.6141 5.5564 20 6 9.1884 4.0263 2.5336 21 6 9.0133 4.3562 4.0173 22 6 4.5833 2.5562 2.4219 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5401 -0.9353 -0.0004 25 1 1.8499 -0.9353 0.0004 26 1 1.3855 2.1160 0.2659 27 1 2.4755 1.4867 -0.9927 28 1 5.3397 1.3294 -0.1817 29 1 4.9049 2.9353 -0.8389 30 1 7.0774 2.2634 0.9804 31 1 6.6672 3.8615 0.2953 32 1 6.2962 3.3318 4.1827 33 1 7.2687 2.3117 3.0955 34 1 6.2117 8.4632 4.0867 35 1 9.3609 2.9836 2.2671 36 1 9.6986 4.7616 1.9113 37 1 9.4084 5.3085 4.3712 38 1 9.0703 3.5307 4.7269 39 1 3.9098 3.0280 3.1374 40 1 4.9034 1.5779 2.7806 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331770288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:17 Heat of formation + Delta-G solvation = 15.387296 kcal Electronic energy + Delta-G solvation = -18784.760297 eV Core-core repulsion = 15987.406052 eV Total energy + Delta-G solvation = -2797.354244 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.16532 -37.51935 -36.01620 -33.83592 -31.88737 -30.59152 -28.33523 -26.15290 -25.59781 -24.51509 -21.60073 -20.92275 -20.56268 -19.99624 -18.78190 -16.99368 -16.27433 -15.85117 -15.49919 -14.71763 -14.61156 -14.09939 -13.86276 -13.54728 -13.38536 -12.93031 -12.60976 -12.49631 -12.20727 -11.78984 -11.54488 -11.37177 -11.11347 -10.97666 -10.97302 -10.44520 -10.35551 -10.12654 -9.96906 -9.87634 -9.51083 -9.31323 -8.93358 -8.41038 -8.32601 -7.60440 -5.92479 -3.89112 1.95780 3.39025 3.47914 3.50883 3.68640 4.57087 4.63078 4.78673 4.89178 4.95432 5.00959 5.11805 5.28480 5.29445 5.37266 5.37884 5.54966 5.64094 5.85942 5.86647 5.98103 6.04240 6.04514 6.18035 6.22662 6.24773 6.34082 6.37452 6.45299 6.46578 6.52159 6.64208 6.78173 7.10100 7.18855 7.25771 7.60338 7.77108 7.97115 8.70034 9.12074 9.72510 11.20678 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.029049 B = 0.005191 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.659993 B = 5392.572289 C = 5745.586668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.147 4.147 3 C 0.087 3.913 4 O -0.378 6.378 5 C 0.085 3.915 6 H 0.078 0.922 7 C -0.153 4.153 8 C 0.048 3.952 9 N -0.476 5.476 10 C 0.083 3.917 11 C 0.010 3.990 12 C -0.448 4.448 13 H 0.076 0.924 14 C 0.075 3.925 15 N -0.906 5.906 16 Si 0.878 3.122 17 H -0.283 1.283 18 H -0.298 1.298 19 H -0.262 1.262 20 C -0.185 4.185 21 C -0.204 4.204 22 C 0.039 3.961 23 H 0.098 0.902 24 H 0.102 0.898 25 H 0.115 0.885 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.014 0.986 34 H 0.260 0.740 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.758 -13.873 -5.470 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.165 4.165 3 C 0.011 3.989 4 O -0.297 6.297 5 C 0.027 3.973 6 H 0.096 0.904 7 C -0.192 4.192 8 C -0.080 4.080 9 N -0.200 5.200 10 C -0.045 4.045 11 C 0.009 3.991 12 C -0.486 4.486 13 H 0.094 0.906 14 C -0.125 4.125 15 N -0.545 5.545 16 Si 0.708 3.292 17 H -0.210 1.210 18 H -0.225 1.225 19 H -0.187 1.187 20 C -0.222 4.222 21 C -0.242 4.242 22 C -0.089 4.089 23 H 0.116 0.884 24 H 0.120 0.880 25 H 0.132 0.868 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.935 -13.305 -5.287 15.908 hybrid contribution 0.233 -0.874 0.927 1.295 sum -6.701 -14.179 -4.360 16.278 Atomic orbital electron populations 1.23824 0.95597 1.02183 1.00629 1.22785 0.95639 0.98333 0.99782 1.21549 0.89002 0.95550 0.92825 1.87900 1.44338 1.37429 1.60050 1.23046 0.91510 0.86755 0.95960 0.90407 1.22948 0.96100 1.01119 0.98990 1.22730 0.95024 0.98790 0.91420 1.64666 1.05869 1.47942 1.01522 1.22075 0.92911 0.95185 0.94333 1.19422 0.85118 0.96270 0.98308 1.20014 1.40042 0.93826 0.94682 0.90572 1.24869 0.94780 0.94430 0.98407 1.69897 1.46210 1.05238 1.33142 0.86915 0.77000 0.79404 0.85924 1.20977 1.22468 1.18692 1.22877 1.04291 0.99094 0.95969 1.22957 1.07392 1.01305 0.92509 1.23176 0.94325 0.96055 0.95383 0.88387 0.87959 0.86750 0.92691 0.92391 0.91159 0.91216 0.94462 0.89757 0.91333 0.96834 0.92992 0.91496 0.89642 0.89368 0.91298 0.89844 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.56 14.31 29.02 0.42 -1.15 16 2 C -0.15 -1.47 9.89 -36.03 -0.36 -1.83 16 3 C 0.09 0.99 6.22 36.00 0.22 1.21 16 4 O -0.38 -5.42 10.07 -35.23 -0.35 -5.77 16 5 C 0.09 1.29 3.51 -24.87 -0.09 1.20 16 6 H 0.08 1.16 7.88 -51.93 -0.41 0.76 16 7 C -0.15 -2.23 6.69 -25.37 -0.17 -2.40 16 8 C 0.05 0.85 6.35 -2.75 -0.02 0.83 16 9 N -0.48 -9.51 4.53 -230.45 -1.04 -10.56 16 10 C 0.08 1.74 4.73 -3.82 -0.02 1.72 16 11 C 0.01 0.23 0.86 -155.66 -0.13 0.10 16 12 C -0.45 -12.34 8.72 -34.44 -0.30 -12.64 16 13 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 14 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 15 N -0.91 -27.82 13.96 55.43 0.77 -27.04 16 16 Si 0.88 22.07 25.11 -169.99 -4.27 17.80 16 17 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 19 H -0.26 -6.23 5.35 56.52 0.30 -5.93 16 20 C -0.19 -3.78 9.88 -26.73 -0.26 -4.05 16 21 C -0.20 -4.39 7.66 -26.73 -0.20 -4.59 16 22 C 0.04 0.67 6.22 -1.90 -0.01 0.66 16 23 H 0.10 0.76 7.90 -52.49 -0.41 0.35 16 24 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 25 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 26 H 0.05 0.59 7.83 -51.93 -0.41 0.18 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.04 0.63 7.48 -51.93 -0.39 0.24 16 31 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.07 1.49 6.20 -51.93 -0.32 1.17 16 33 H 0.01 0.26 7.45 -51.93 -0.39 -0.12 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 36 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.09 2.01 7.23 -51.93 -0.38 1.64 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.04 0.74 8.02 -51.93 -0.42 0.32 16 LS Contribution 321.22 15.07 4.84 4.84 Total: -1.00 -30.16 321.22 -8.07 -38.23 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.00 Total: 1.37 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -1.02 Total: -18.87 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.27 Total: -37.60 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.35 Total: -5.77 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.27 Total: 17.80 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.16 -8.07 -38.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331770288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.615 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds