Wall clock time and date at job start Sun Mar 29 2020 23:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00361 * 2 1 4 4 O 1.42899 * 109.47065 * 135.00074 * 3 2 1 5 5 C 1.42903 * 113.99745 * 180.02562 * 4 3 2 6 6 H 1.09004 * 110.64751 * 31.69421 * 5 4 3 7 7 C 1.54597 * 110.72308 * 268.54390 * 5 4 3 8 8 C 1.53996 * 105.14083 * 219.68452 * 7 5 4 9 9 N 1.47903 * 107.05636 * 358.77365 * 8 7 5 10 10 C 1.46901 * 110.99947 * 145.84126 * 9 8 7 11 11 C 1.53002 * 109.46862 * 75.35164 * 10 9 8 12 12 C 1.50703 * 115.54978 * 38.90550 * 11 10 9 13 13 H 1.07993 * 120.00060 * 269.82604 * 12 11 10 14 14 C 1.37883 * 119.99574 * 89.83057 * 12 11 10 15 15 N 1.31513 * 119.99543 * 174.35489 * 14 12 11 16 16 Si 1.86801 * 119.99975 * 354.35043 * 14 12 11 17 17 H 1.48500 * 109.46907 * 90.96351 * 16 14 12 18 18 H 1.48500 * 109.47015 * 210.96033 * 16 14 12 19 19 H 1.48499 * 109.47161 * 330.96312 * 16 14 12 20 20 C 1.53006 * 117.49791 * 253.20373 * 11 10 9 21 21 C 1.52999 * 117.49883 * 184.58132 * 11 10 9 22 22 C 1.48538 * 105.81862 * 25.33091 * 9 8 7 23 23 H 1.07999 * 119.99772 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.00473 * 179.97438 * 1 2 3 25 25 H 1.07999 * 119.99772 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.46648 * 14.99646 * 3 2 1 27 27 H 1.09000 * 109.46855 * 255.00274 * 3 2 1 28 28 H 1.09004 * 110.30715 * 338.60026 * 7 5 4 29 29 H 1.09002 * 110.30645 * 100.66662 * 7 5 4 30 30 H 1.09000 * 109.91381 * 118.12275 * 8 7 5 31 31 H 1.08996 * 109.91631 * 239.42127 * 8 7 5 32 32 H 1.08998 * 109.47273 * 195.34710 * 10 9 8 33 33 H 1.08998 * 109.47160 * 315.35599 * 10 9 8 34 34 H 0.97002 * 119.99630 * 179.97438 * 15 14 12 35 35 H 1.08999 * 117.49997 * 359.97438 * 20 11 10 36 36 H 1.09001 * 117.49906 * 145.02188 * 20 11 10 37 37 H 1.09002 * 117.49851 * 214.97791 * 21 11 10 38 38 H 1.09001 * 117.49650 * 359.97336 * 21 11 10 39 39 H 1.09000 * 110.66269 * 202.35518 * 22 9 8 40 40 H 1.09005 * 110.66745 * 79.22922 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2411 0.9527 5 6 3.9078 2.4351 1.0328 6 1 3.2940 3.3108 0.8217 7 6 5.1131 2.3662 0.0671 8 6 6.2849 2.9986 0.8407 9 7 5.7570 3.4263 2.1544 10 6 6.7735 3.2765 3.2043 11 6 7.8071 4.3974 3.0770 12 6 7.2558 5.7515 2.7113 13 1 7.1677 6.0363 1.6734 14 6 6.8639 6.6267 3.7021 15 7 6.4877 7.8476 3.3898 16 14 6.8674 6.0783 5.4878 17 1 8.1824 6.3955 6.1004 18 1 5.7930 6.7895 6.2261 19 1 6.6297 4.6141 5.5564 20 6 9.1884 4.0263 2.5336 21 6 9.0133 4.3562 4.0173 22 6 4.5833 2.5562 2.4219 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5401 -0.9353 -0.0004 25 1 1.8499 -0.9353 0.0004 26 1 1.3855 2.1160 0.2659 27 1 2.4755 1.4867 -0.9927 28 1 5.3397 1.3294 -0.1817 29 1 4.9049 2.9353 -0.8389 30 1 7.0774 2.2634 0.9804 31 1 6.6672 3.8615 0.2953 32 1 6.2962 3.3318 4.1827 33 1 7.2687 2.3117 3.0955 34 1 6.2117 8.4632 4.0867 35 1 9.3609 2.9836 2.2671 36 1 9.6986 4.7616 1.9113 37 1 9.4084 5.3085 4.3712 38 1 9.0703 3.5307 4.7269 39 1 3.9098 3.0280 3.1374 40 1 4.9034 1.5779 2.7806 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331770288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:16 Heat of formation + Delta-G solvation = -3.965851 kcal Electronic energy + Delta-G solvation = -18785.599512 eV Core-core repulsion = 15987.406052 eV Total energy + Delta-G solvation = -2798.193460 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.46584 -38.92234 -37.43932 -34.68315 -34.06129 -31.93677 -29.61038 -27.86353 -26.82676 -26.10478 -23.27162 -22.21838 -21.89083 -20.81694 -20.60996 -18.34285 -17.89421 -17.07368 -16.72822 -16.50695 -15.90070 -15.46581 -15.36133 -14.78625 -14.70263 -14.54360 -14.25940 -13.80665 -13.42558 -13.30840 -13.02549 -12.88020 -12.61309 -12.33650 -12.20454 -12.01067 -11.85045 -11.78305 -11.47811 -11.45362 -10.84139 -10.77756 -10.52032 -10.19873 -10.14787 -9.07349 -8.13998 -6.13359 1.24359 1.39420 1.42312 1.53112 2.47404 2.60053 3.18823 3.20861 3.41594 3.68529 3.75277 4.03224 4.10580 4.20023 4.24675 4.26689 4.35424 4.45345 4.48753 4.57538 4.62193 4.68126 4.71372 4.81951 4.86383 4.87771 4.92984 5.01999 5.06450 5.09881 5.22739 5.38965 5.52141 5.65592 5.73988 5.82442 6.09582 6.28353 6.33025 6.52190 6.90356 7.51423 9.03088 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.029049 B = 0.005191 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.659993 B = 5392.572289 C = 5745.586668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.169 4.169 3 C 0.082 3.918 4 O -0.388 6.388 5 C 0.093 3.907 6 H 0.074 0.926 7 C -0.143 4.143 8 C 0.051 3.949 9 N -0.510 5.510 10 C 0.091 3.909 11 C -0.016 4.016 12 C -0.435 4.435 13 H 0.029 0.971 14 C 0.017 3.983 15 N -0.959 5.959 16 Si 0.934 3.066 17 H -0.275 1.275 18 H -0.306 1.306 19 H -0.236 1.236 20 C -0.166 4.166 21 C -0.200 4.200 22 C 0.040 3.960 23 H 0.104 0.896 24 H 0.120 0.880 25 H 0.116 0.884 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.038 0.962 34 H 0.259 0.741 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.915 -16.744 -5.060 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.188 4.188 3 C 0.006 3.994 4 O -0.307 6.307 5 C 0.034 3.966 6 H 0.092 0.908 7 C -0.181 4.181 8 C -0.077 4.077 9 N -0.234 5.234 10 C -0.037 4.037 11 C -0.018 4.018 12 C -0.473 4.473 13 H 0.048 0.952 14 C -0.178 4.178 15 N -0.601 5.601 16 Si 0.761 3.239 17 H -0.201 1.201 18 H -0.233 1.233 19 H -0.160 1.160 20 C -0.203 4.203 21 C -0.237 4.237 22 C -0.088 4.088 23 H 0.122 0.878 24 H 0.138 0.862 25 H 0.134 0.866 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.083 -16.212 -4.890 18.355 hybrid contribution 0.246 0.029 0.668 0.712 sum -6.837 -16.183 -4.222 18.068 Atomic orbital electron populations 1.24060 0.95152 1.03366 0.98145 1.22775 0.96182 0.97729 1.02066 1.21740 0.88470 0.96632 0.92581 1.87876 1.45038 1.36714 1.61108 1.22850 0.91752 0.87152 0.94829 0.90820 1.22873 0.94566 1.01854 0.98778 1.22666 0.96414 0.98131 0.90512 1.64525 1.06704 1.49866 1.02315 1.21903 0.92451 0.95140 0.94228 1.19359 0.86612 0.94831 1.00962 1.20115 1.38730 0.96092 0.92397 0.95248 1.25645 0.94979 0.94327 1.02848 1.70056 1.48811 1.06823 1.34421 0.85992 0.76950 0.80322 0.80616 1.20096 1.23332 1.15961 1.22888 1.01484 1.00686 0.95256 1.22991 1.05489 1.01665 0.93576 1.23144 0.93368 0.95765 0.96558 0.87794 0.86184 0.86569 0.92377 0.91580 0.89643 0.90147 0.93454 0.92247 0.92275 0.94358 0.93251 0.88154 0.90747 0.91092 0.88258 0.90595 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 14.31 67.78 0.97 -1.49 16 2 C -0.17 -3.06 9.89 25.65 0.25 -2.81 16 3 C 0.08 1.71 6.22 71.24 0.44 2.16 16 4 O -0.39 -10.43 10.07 -148.98 -1.50 -11.93 16 5 C 0.09 2.67 3.51 31.80 0.11 2.79 16 6 H 0.07 2.16 7.88 -2.38 -0.02 2.14 16 7 C -0.14 -3.89 6.69 31.47 0.21 -3.68 16 8 C 0.05 1.72 6.35 86.45 0.55 2.26 16 9 N -0.51 -19.92 4.53 -883.00 -4.00 -23.92 16 10 C 0.09 3.61 4.73 86.30 0.41 4.02 16 11 C -0.02 -0.73 0.86 -52.92 -0.05 -0.78 16 12 C -0.44 -24.52 8.72 25.60 0.22 -24.30 16 13 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 14 C 0.02 1.00 5.47 84.66 0.46 1.47 16 15 N -0.96 -61.16 13.96 21.45 0.30 -60.86 16 16 Si 0.93 45.49 25.11 68.60 1.72 47.21 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.31 -15.18 7.11 99.48 0.71 -14.47 16 19 H -0.24 -10.42 5.35 99.48 0.53 -9.89 16 20 C -0.17 -6.39 9.88 30.60 0.30 -6.09 16 21 C -0.20 -8.05 7.66 30.60 0.23 -7.81 16 22 C 0.04 1.31 6.22 86.65 0.54 1.85 16 23 H 0.10 1.37 7.90 -2.91 -0.02 1.34 16 24 H 0.12 1.30 8.06 -2.91 -0.02 1.28 16 25 H 0.12 2.03 8.06 -2.91 -0.02 2.00 16 26 H 0.06 1.16 7.83 -2.39 -0.02 1.14 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 2.09 8.07 -2.38 -0.02 2.08 16 29 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.05 1.49 7.48 -2.39 -0.02 1.47 16 31 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.06 2.42 6.20 -2.39 -0.01 2.41 16 33 H 0.04 1.33 7.45 -2.39 -0.02 1.31 16 34 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 35 H 0.10 3.22 8.08 -2.39 -0.02 3.20 16 36 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.07 3.11 7.23 -2.39 -0.02 3.09 16 38 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 39 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.05 1.64 8.02 -2.38 -0.02 1.63 16 Total: -1.00 -66.22 321.22 1.99 -64.24 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.80 Total: 17.69 kcal Atomic # 6 Polarization: -37.09 SS G_CDS: 4.66 Total: -32.43 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -3.70 Total: -84.78 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -1.50 Total: -11.93 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.72 Total: 47.21 kcal Total: -66.22 1.99 -64.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331770288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.269 kcal (2) G-P(sol) polarization free energy of solvation -66.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds