Wall clock time and date at job start Sun Mar 29 2020 23:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 120.00037 * 2 1 4 4 C 1.53005 * 109.46933 * 124.99840 * 3 2 1 5 5 C 1.52995 * 109.46823 * 187.54495 * 4 3 2 6 6 H 1.09000 * 110.00071 * 62.35270 * 5 4 3 7 7 C 1.54320 * 109.77432 * 183.50704 * 5 4 3 8 8 C 1.55156 * 102.86501 * 141.88627 * 7 5 4 9 9 C 1.54909 * 101.58113 * 324.30509 * 8 7 5 10 10 N 1.47025 * 109.88488 * 301.25621 * 5 4 3 11 11 C 1.34772 * 125.64957 * 61.67914 * 10 5 4 12 12 O 1.21283 * 119.99872 * 4.71810 * 11 10 5 13 13 C 1.50696 * 120.00424 * 184.99220 * 11 10 5 14 14 H 1.09004 * 109.46667 * 19.65749 * 13 11 10 15 15 C 1.52994 * 109.47455 * 259.65979 * 13 11 10 16 16 C 1.50703 * 109.47169 * 139.65080 * 13 11 10 17 17 H 1.07993 * 120.00083 * 3.65377 * 16 13 11 18 18 C 1.37883 * 119.99740 * 183.65139 * 16 13 11 19 19 N 1.31514 * 119.99360 * 197.42534 * 18 16 13 20 20 Si 1.86803 * 120.00234 * 17.42101 * 18 16 13 21 21 H 1.48499 * 109.46748 * 95.48596 * 20 18 16 22 22 H 1.48496 * 109.47052 * 215.48417 * 20 18 16 23 23 H 1.48500 * 109.46945 * 335.48889 * 20 18 16 24 24 H 1.08001 * 120.00094 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.99662 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00029 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47279 * 4.99926 * 3 2 1 28 28 H 1.08998 * 109.47075 * 244.99666 * 3 2 1 29 29 H 1.09000 * 109.47146 * 67.54573 * 4 3 2 30 30 H 1.08993 * 109.47020 * 307.54394 * 4 3 2 31 31 H 1.08993 * 110.92254 * 23.46915 * 7 5 4 32 32 H 1.09002 * 110.58573 * 260.14622 * 7 5 4 33 33 H 1.08996 * 111.00399 * 206.22761 * 8 7 5 34 34 H 1.08998 * 111.03292 * 82.38950 * 8 7 5 35 35 H 1.09004 * 110.36992 * 278.17284 * 9 8 7 36 36 H 1.09001 * 110.46318 * 155.89378 * 9 8 7 37 37 H 1.08996 * 109.47477 * 59.23643 * 15 13 11 38 38 H 1.08998 * 109.47385 * 179.24525 * 15 13 11 39 39 H 1.08997 * 109.46867 * 299.23564 * 15 13 11 40 40 H 0.97000 * 119.99721 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.6618 2.7242 1.2937 6 1 2.8888 3.4665 1.4924 7 6 4.7080 2.7357 2.4281 8 6 5.8329 3.6355 1.8516 9 6 5.7950 3.2569 0.3499 10 7 4.3661 3.0572 0.0469 11 6 3.7985 3.1675 -1.1705 12 8 2.5955 3.0707 -1.2897 13 6 4.6592 3.4049 -2.3845 14 1 5.6870 3.1173 -2.1631 15 6 4.6140 4.8874 -2.7598 16 6 4.1435 2.5794 -3.5351 17 1 3.2449 1.9919 -3.4181 18 6 4.8190 2.5743 -4.7371 19 7 4.2173 2.1516 -5.8276 20 14 6.5884 3.1678 -4.8168 21 1 7.5057 2.0046 -4.7132 22 1 6.8186 3.8664 -6.1068 23 1 6.8475 4.1040 -3.6936 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6213 1.4025 -0.9313 29 1 3.8195 0.5927 1.0248 30 1 2.4962 1.1022 2.1006 31 1 5.0807 1.7304 2.6241 32 1 4.2878 3.1755 3.3326 33 1 6.7976 3.3861 2.2932 34 1 5.6013 4.6910 1.9943 35 1 6.3518 2.3359 0.1767 36 1 6.2022 4.0653 -0.2573 37 1 4.9744 5.4853 -1.9227 38 1 5.2471 5.0615 -3.6298 39 1 3.5883 5.1717 -2.9944 40 1 4.6924 2.1484 -6.6733 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336759769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:07 Heat of formation + Delta-G solvation = -4.946675 kcal Electronic energy + Delta-G solvation = -19547.631221 eV Core-core repulsion = 16749.395230 eV Total energy + Delta-G solvation = -2798.235992 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.99781 -37.04554 -35.13984 -33.66883 -31.71233 -31.08217 -30.57905 -27.26716 -25.17498 -23.98209 -22.87886 -21.47219 -20.26351 -19.36394 -18.13593 -16.95638 -16.41098 -16.02434 -14.97377 -14.77223 -14.27338 -13.91642 -13.37197 -13.29409 -13.12913 -12.77057 -12.54056 -12.24608 -12.13234 -11.87050 -11.75978 -11.46414 -11.13596 -11.01058 -10.76648 -10.71295 -10.64848 -10.39799 -10.29707 -9.95542 -9.65956 -9.27036 -8.76946 -8.50091 -8.41290 -7.84405 -6.11225 -4.05237 2.73233 3.23969 3.32947 3.35000 3.56387 3.62107 4.38778 4.64497 4.66861 4.92091 5.18185 5.22475 5.38190 5.47620 5.51078 5.64930 5.67865 5.75179 5.80619 5.90672 5.92248 5.95969 6.11840 6.20187 6.27680 6.29124 6.37124 6.48748 6.59936 6.67629 6.79057 6.91825 7.01407 7.26060 7.27492 7.29409 7.62006 8.16423 8.50182 9.04488 9.11284 9.51778 11.01600 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.008561 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.545168 B = 3269.856508 C = 4385.548527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.141 4.141 3 C -0.105 4.105 4 C -0.117 4.117 5 C 0.135 3.865 6 H 0.068 0.932 7 C -0.127 4.127 8 C -0.133 4.133 9 C 0.103 3.897 10 N -0.626 5.626 11 C 0.538 3.462 12 O -0.518 6.518 13 C 0.007 3.993 14 H 0.036 0.964 15 C -0.134 4.134 16 C -0.510 4.510 17 H 0.082 0.918 18 C 0.078 3.922 19 N -0.885 5.885 20 Si 0.861 3.139 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.255 1.255 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.024 0.976 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 1.309 16.153 16.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.159 4.159 3 C -0.142 4.142 4 C -0.156 4.156 5 C 0.031 3.969 6 H 0.087 0.913 7 C -0.165 4.165 8 C -0.171 4.171 9 C -0.021 4.021 10 N -0.363 5.363 11 C 0.330 3.670 12 O -0.394 6.394 13 C -0.014 4.014 14 H 0.054 0.946 15 C -0.192 4.192 16 C -0.547 4.547 17 H 0.101 0.899 18 C -0.125 4.125 19 N -0.521 5.521 20 Si 0.688 3.312 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.179 1.179 24 H 0.105 0.895 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.769 1.236 15.774 16.062 hybrid contribution 1.016 0.110 -0.226 1.047 sum 3.786 1.346 15.548 16.058 Atomic orbital electron populations 1.23688 0.96086 1.00968 1.04386 1.23282 0.96160 0.99241 0.97265 1.21709 0.98669 0.93461 1.00317 1.21951 0.98650 0.96149 0.98825 1.21550 0.94435 0.96469 0.84437 0.91348 1.22692 0.95899 1.00575 0.97369 1.22776 0.99052 1.00110 0.95199 1.22209 0.83433 1.01084 0.95354 1.48786 1.08409 1.72046 1.07097 1.20960 0.89137 0.74590 0.82322 1.90625 1.15553 1.47726 1.85472 1.19192 0.95131 0.95246 0.91870 0.94580 1.22035 1.01879 0.96029 0.99258 1.20703 1.12247 1.28059 0.93724 0.89948 1.24898 0.97710 0.94780 0.95095 1.69997 1.36128 1.47221 0.98794 0.87197 0.86568 0.79314 0.78129 1.20630 1.21167 1.17948 0.89489 0.88913 0.88474 0.90820 0.86799 0.92169 0.92111 0.90607 0.90612 0.90251 0.90850 0.91735 0.90647 0.95696 0.92761 0.92474 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.35 14.32 29.01 0.42 -2.93 16 2 C -0.14 -2.37 9.51 -36.03 -0.34 -2.71 16 3 C -0.11 -1.94 3.73 -27.88 -0.10 -2.05 16 4 C -0.12 -1.75 4.82 -26.73 -0.13 -1.88 16 5 C 0.13 1.95 3.20 -66.96 -0.21 1.74 16 6 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 7 C -0.13 -1.33 6.47 -24.90 -0.16 -1.49 16 8 C -0.13 -1.36 7.08 -24.58 -0.17 -1.53 16 9 C 0.10 1.41 6.15 -2.53 -0.02 1.40 16 10 N -0.63 -10.80 3.07 -163.02 -0.50 -11.30 16 11 C 0.54 11.73 5.52 -10.99 -0.06 11.67 16 12 O -0.52 -12.62 11.56 5.56 0.06 -12.56 16 13 C 0.01 0.17 1.72 -92.93 -0.16 0.01 16 14 H 0.04 0.81 5.48 -51.93 -0.28 0.52 16 15 C -0.13 -2.92 8.55 37.15 0.32 -2.60 16 16 C -0.51 -14.46 8.77 -34.44 -0.30 -14.76 16 17 H 0.08 2.65 7.58 -52.49 -0.40 2.25 16 18 C 0.08 2.22 5.33 -17.82 -0.09 2.13 16 19 N -0.88 -26.98 13.96 55.43 0.77 -26.20 16 20 Si 0.86 20.50 25.83 -169.99 -4.39 16.11 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.26 -5.56 5.50 56.52 0.31 -5.25 16 24 H 0.09 1.18 8.06 -52.49 -0.42 0.76 16 25 H 0.09 1.45 7.84 -52.48 -0.41 1.04 16 26 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.07 1.46 6.82 -51.93 -0.35 1.11 16 28 H 0.11 2.59 4.77 -53.83 -0.26 2.34 16 29 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 30 H 0.06 0.79 8.13 -51.93 -0.42 0.36 16 31 H 0.08 0.73 7.83 -51.93 -0.41 0.33 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.05 7.58 -51.93 -0.39 0.65 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 1.19 4.98 -51.93 -0.26 0.93 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 309.82 15.07 4.67 4.67 Total: -1.00 -31.41 309.82 -7.05 -38.46 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.64 Total: 3.84 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -1.02 Total: -13.01 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.27 Total: -37.50 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.06 Total: -12.56 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.39 Total: 16.11 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.41 -7.05 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336759769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.509 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds