Wall clock time and date at job start Sun Mar 29 2020 23:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 119.99889 * 2 1 4 4 C 1.53002 * 109.47289 * 125.00056 * 3 2 1 5 5 C 1.52999 * 109.46978 * 174.88945 * 4 3 2 6 6 H 1.09001 * 109.87840 * 303.60913 * 5 4 3 7 7 C 1.54327 * 109.88283 * 64.62958 * 5 4 3 8 8 C 1.55160 * 102.93987 * 141.61165 * 7 5 4 9 9 C 1.54906 * 101.58187 * 324.49459 * 8 7 5 10 10 N 1.47190 * 109.79333 * 182.41255 * 5 4 3 11 11 C 1.34767 * 125.73602 * 61.64934 * 10 5 4 12 12 O 1.21282 * 120.00544 * 4.92702 * 11 10 5 13 13 C 1.50703 * 119.99944 * 184.93064 * 11 10 5 14 14 H 1.09005 * 109.46798 * 299.99619 * 13 11 10 15 15 C 1.52994 * 109.47144 * 59.99903 * 13 11 10 16 16 C 1.50703 * 109.47071 * 179.97438 * 13 11 10 17 17 H 1.07998 * 120.00083 * 359.97438 * 16 13 11 18 18 C 1.37875 * 119.99825 * 179.97438 * 16 13 11 19 19 N 1.31517 * 119.99884 * 179.97438 * 18 16 13 20 20 Si 1.86796 * 120.00277 * 359.97438 * 18 16 13 21 21 H 1.48505 * 109.46984 * 90.00031 * 20 18 16 22 22 H 1.48503 * 109.47406 * 209.99967 * 20 18 16 23 23 H 1.48504 * 109.47309 * 330.00095 * 20 18 16 24 24 H 1.08003 * 119.99636 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.99978 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99763 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.47526 * 5.00154 * 3 2 1 28 28 H 1.09005 * 109.47006 * 245.00286 * 3 2 1 29 29 H 1.09002 * 109.46871 * 54.89175 * 4 3 2 30 30 H 1.08998 * 109.47241 * 294.88800 * 4 3 2 31 31 H 1.08995 * 110.71984 * 23.24267 * 7 5 4 32 32 H 1.09003 * 110.86887 * 260.03993 * 7 5 4 33 33 H 1.09006 * 110.99785 * 206.42381 * 8 7 5 34 34 H 1.08991 * 111.04182 * 82.58833 * 8 7 5 35 35 H 1.08997 * 110.36876 * 155.85517 * 9 8 7 36 36 H 1.09000 * 110.36761 * 278.06397 * 9 8 7 37 37 H 1.09004 * 109.47001 * 179.97438 * 15 13 11 38 38 H 1.08999 * 109.47047 * 300.00086 * 15 13 11 39 39 H 1.08997 * 109.47563 * 60.00482 * 15 13 11 40 40 H 0.97000 * 119.99955 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8894 2.6003 1.1094 6 1 4.4062 2.6448 0.1507 7 6 2.9956 3.8465 1.2822 8 6 3.8771 4.7897 2.1429 9 6 4.6056 3.7797 3.0642 10 7 4.8661 2.6063 2.2105 11 6 5.8384 1.6936 2.4053 12 8 6.0200 0.8170 1.5871 13 6 6.6999 1.7622 3.6399 14 1 7.2261 2.7165 3.6631 15 6 5.8189 1.6350 4.8842 16 6 7.7013 0.6362 3.6168 17 1 7.7125 -0.0597 2.7910 18 6 8.6032 0.4945 4.6499 19 7 9.4768 -0.4884 4.6300 20 14 8.5844 1.6985 6.0780 21 1 7.6715 1.1969 7.1364 22 1 9.9563 1.8328 6.6304 23 1 8.1104 3.0231 5.6025 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6213 1.4026 -0.9315 29 1 3.6814 0.4563 1.1414 30 1 2.4722 1.3271 2.1150 31 1 2.0758 3.5913 1.8084 32 1 2.7726 4.3012 0.3170 33 1 3.2619 5.4761 2.7248 34 1 4.5877 5.3355 1.5224 35 1 5.5434 4.2027 3.4241 36 1 3.9678 3.5038 3.9039 37 1 6.4421 1.6842 5.7772 38 1 5.0943 2.4491 4.9011 39 1 5.2928 0.6808 4.8610 40 1 10.1116 -0.5879 5.3567 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336759773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:11 Heat of formation + Delta-G solvation = -22.751864 kcal Electronic energy + Delta-G solvation = -19098.674316 eV Core-core repulsion = 16299.666234 eV Total energy + Delta-G solvation = -2799.008083 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.80966 -37.16425 -35.47853 -33.85707 -31.89839 -31.22098 -30.55857 -27.28200 -25.14728 -24.33846 -22.75602 -21.71046 -20.43076 -19.75287 -18.28881 -16.91733 -16.12349 -15.70209 -15.24604 -15.08616 -14.46954 -14.13348 -13.61273 -13.32722 -13.12511 -12.99855 -12.94688 -12.57991 -12.39751 -11.96329 -11.57533 -11.39886 -11.29610 -11.11225 -11.01040 -10.93508 -10.61297 -10.55312 -10.41669 -10.22676 -9.58990 -9.38248 -9.05872 -8.63552 -8.54356 -8.10216 -6.02802 -4.02634 2.23623 3.24655 3.31820 3.37490 3.53606 3.60786 4.39810 4.60684 4.65495 4.79547 4.93800 5.08066 5.26914 5.27917 5.37345 5.41536 5.48499 5.58652 5.68056 5.73832 5.77900 5.85644 5.87736 5.91054 6.04210 6.14379 6.21139 6.30124 6.37962 6.45411 6.48265 6.58891 6.70800 6.74492 6.97868 7.20148 7.58885 8.15790 8.57258 9.12154 9.17751 9.56499 11.10264 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.026157 B = 0.005970 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.212764 B = 4688.828240 C = 5313.503380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.090 4.090 4 C -0.126 4.126 5 C 0.138 3.862 6 H 0.070 0.930 7 C -0.127 4.127 8 C -0.135 4.135 9 C 0.102 3.898 10 N -0.629 5.629 11 C 0.545 3.455 12 O -0.528 6.528 13 C 0.000 4.000 14 H 0.049 0.951 15 C -0.148 4.148 16 C -0.504 4.504 17 H 0.093 0.907 18 C 0.070 3.930 19 N -0.897 5.897 20 Si 0.884 3.116 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.268 1.268 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.109 0.891 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.038 0.962 39 H 0.055 0.945 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.547 10.468 -4.772 20.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.161 4.161 3 C -0.128 4.128 4 C -0.164 4.164 5 C 0.034 3.966 6 H 0.088 0.912 7 C -0.165 4.165 8 C -0.173 4.173 9 C -0.022 4.022 10 N -0.367 5.367 11 C 0.336 3.664 12 O -0.402 6.402 13 C -0.022 4.022 14 H 0.067 0.933 15 C -0.205 4.205 16 C -0.542 4.542 17 H 0.111 0.889 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.715 3.285 21 H -0.205 1.205 22 H -0.223 1.223 23 H -0.193 1.193 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.188 9.810 -5.107 19.605 hybrid contribution 0.045 0.551 0.980 1.125 sum -16.143 10.361 -4.127 19.621 Atomic orbital electron populations 1.23780 0.95906 1.01501 1.03079 1.23058 0.95980 0.98935 0.98149 1.20736 0.97933 0.95050 0.99066 1.21898 0.97384 0.99372 0.97756 1.21489 0.89163 0.94393 0.91546 0.91214 1.22712 0.98118 0.95063 1.00586 1.22803 0.98895 0.97230 0.98382 1.22295 1.00347 0.85933 0.93586 1.48864 1.32671 1.27092 1.28040 1.21030 0.78093 0.78994 0.88281 1.90574 1.68453 1.35078 1.46061 1.19267 0.93900 1.00294 0.88694 0.93308 1.22193 0.99025 1.00713 0.98595 1.20952 1.13215 1.11438 1.08614 0.88911 1.24974 0.95156 0.95198 0.97800 1.69886 1.19838 1.30892 1.32879 0.86914 0.76125 0.82301 0.83208 1.20533 1.22325 1.19295 0.88781 0.88834 0.87333 0.91647 0.90932 0.90159 0.91947 0.90699 0.90554 0.90261 0.90755 0.90577 0.91632 0.93415 0.94294 0.92566 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.04 14.32 29.01 0.42 -1.62 16 2 C -0.14 -1.63 9.52 -36.03 -0.34 -1.97 16 3 C -0.09 -1.02 5.39 -27.88 -0.15 -1.17 16 4 C -0.13 -1.79 4.64 -26.73 -0.12 -1.91 16 5 C 0.14 1.97 2.91 -66.86 -0.19 1.77 16 6 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 7 C -0.13 -1.29 5.58 -24.89 -0.14 -1.43 16 8 C -0.14 -1.36 7.09 -24.58 -0.17 -1.53 16 9 C 0.10 1.38 5.29 -2.53 -0.01 1.36 16 10 N -0.63 -10.93 3.05 -162.89 -0.50 -11.42 16 11 C 0.55 12.37 6.93 -10.99 -0.08 12.30 16 12 O -0.53 -13.91 14.66 5.56 0.08 -13.82 16 13 C 0.00 0.00 1.61 -92.92 -0.15 -0.15 16 14 H 0.05 1.15 6.82 -51.93 -0.35 0.79 16 15 C -0.15 -3.13 8.51 37.15 0.32 -2.82 16 16 C -0.50 -14.83 8.95 -34.44 -0.31 -15.14 16 17 H 0.09 3.11 7.00 -52.49 -0.37 2.74 16 18 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 19 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 20 Si 0.88 21.59 24.38 -169.99 -4.14 17.44 16 21 H -0.28 -6.58 6.87 56.52 0.39 -6.19 16 22 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.27 -6.07 6.53 56.52 0.37 -5.70 16 24 H 0.09 0.84 8.06 -52.48 -0.42 0.41 16 25 H 0.09 0.82 7.84 -52.49 -0.41 0.41 16 26 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 27 H 0.06 0.63 7.18 -51.93 -0.37 0.25 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.44 6.95 -51.93 -0.36 1.08 16 30 H 0.06 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.07 0.70 7.77 -51.93 -0.40 0.30 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.05 7.51 -51.93 -0.39 0.67 16 36 H 0.07 0.83 6.90 -51.93 -0.36 0.47 16 37 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 38 H 0.04 0.67 5.21 -51.93 -0.27 0.40 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 310.55 15.07 4.68 4.68 Total: -1.00 -33.27 310.55 -6.59 -39.86 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.44 Total: 0.87 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -1.04 Total: -10.35 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.28 Total: -38.68 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.08 Total: -13.82 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.14 Total: 17.44 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.27 -6.59 -39.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336759773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.108 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds